BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04910.1 Length=375 Score E Sequences producing significant alignments: (Bits) Value Ahg930814 jgi|Araly1|930814|scaffold_303271.1 459 8e-129 > Ahg930814 jgi|Araly1|930814|scaffold_303271.1 Length=427 Score = 459 bits (248), Expect = 8e-129 Identities = 320/355 (90%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 23 CGAAAGCGGAGTTCGGACAATGGTGTGTAGCCGATGGACAGATACCAGATAATGTGATAC 82 |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 55 CGAAAGCGGAATTCGGACAATGGTGTGTAGCTGATCCACAGATACCAGATAATGTGATAC 114 Query 83 AAGCAGCCGTAGACTGGGCTTGTCAAACAGGTGGAGCAGACTGCAGTACGATTCAGCCTA 142 |||||||| |||||||||||||||||| ||| |||||||| ||||||| |||||||||| Sbjct 115 AAGCAGCCTTAGACTGGGCTTGTCAAATAGGCGGAGCAGATTGCAGTAAGATTCAGCCTG 174 Query 143 ACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATAACT 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 175 ACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATGATT 234 Query 203 ATTACCAGCGTTATAAGCGCAACGGCGGTTCCTGTAACTTCAACAGCACTGCATTTATCA 262 |||| ||||||||||||| ||| |||||| ||||| ||||| ||||| ||||| | |||| Sbjct 235 ATTATCAGCGTTATAAGCACAAGGGCGGTACCTGTGACTTCCACAGCGCTGCAGTAATCA 294 Query 263 CACAAAC-CGACCCTAGTAAGCAACTTTATCTAAACCCTTTTTGTTA-CAGTTATTTAAG 320 | || | |||||||||||||||| ||||| | ||||||||| |||| ||| |||||||| Sbjct 295 CGCAG-CGCGACCCTAGTAAGCAAATTTATATCAACCCTTTT-GTTAACAGCTATTTAAG 352 Query 321 CTCTTTGATCAATCAAAATCTTGAACCATCTGTTTCTGATTATCTCATGATTTGA 375 |||||||||||||||| |||||||||||| ||| |||||||||||||||||||| Sbjct 353 CTCTTTGATCAATCAAGATCTTGAACCATTTGTGACTGATTATCTCATGATTTGA 407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13392611739 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5