BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04910.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930814 jgi|Araly1|930814|scaffold_303271.1                        459    8e-129


> Ahg930814 jgi|Araly1|930814|scaffold_303271.1
Length=427

 Score =  459 bits (248),  Expect = 8e-129
 Identities = 320/355 (90%), Gaps = 4/355 (1%)
 Strand=Plus/Plus

Query  23   CGAAAGCGGAGTTCGGACAATGGTGTGTAGCCGATGGACAGATACCAGATAATGTGATAC  82
            |||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||
Sbjct  55   CGAAAGCGGAATTCGGACAATGGTGTGTAGCTGATCCACAGATACCAGATAATGTGATAC  114

Query  83   AAGCAGCCGTAGACTGGGCTTGTCAAACAGGTGGAGCAGACTGCAGTACGATTCAGCCTA  142
            |||||||| |||||||||||||||||| ||| |||||||| ||||||| |||||||||| 
Sbjct  115  AAGCAGCCTTAGACTGGGCTTGTCAAATAGGCGGAGCAGATTGCAGTAAGATTCAGCCTG  174

Query  143  ACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATAACT  202
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  175  ACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATGATT  234

Query  203  ATTACCAGCGTTATAAGCGCAACGGCGGTTCCTGTAACTTCAACAGCACTGCATTTATCA  262
            |||| ||||||||||||| ||| |||||| ||||| ||||| ||||| ||||| | ||||
Sbjct  235  ATTATCAGCGTTATAAGCACAAGGGCGGTACCTGTGACTTCCACAGCGCTGCAGTAATCA  294

Query  263  CACAAAC-CGACCCTAGTAAGCAACTTTATCTAAACCCTTTTTGTTA-CAGTTATTTAAG  320
            | ||  | |||||||||||||||| ||||| | ||||||||| |||| ||| ||||||||
Sbjct  295  CGCAG-CGCGACCCTAGTAAGCAAATTTATATCAACCCTTTT-GTTAACAGCTATTTAAG  352

Query  321  CTCTTTGATCAATCAAAATCTTGAACCATCTGTTTCTGATTATCTCATGATTTGA  375
            |||||||||||||||| |||||||||||| |||  ||||||||||||||||||||
Sbjct  353  CTCTTTGATCAATCAAGATCTTGAACCATTTGTGACTGATTATCTCATGATTTGA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5