BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04920.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480126 jgi|Araly1|480126|fgenesh2_kg.3__2827__AT2G04920.1 1253 0.0
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 575 3e-163
Ahg930217 jgi|Araly1|930217|scaffold_302674.1 468 4e-131
Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173 394 8e-109
Ahg930838 jgi|Araly1|930838|scaffold_303295.1 390 1e-107
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 372 4e-102
Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 78.7 9e-14
Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 58.4 1e-07
Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 56.5 4e-07
> Ahg480126 jgi|Araly1|480126|fgenesh2_kg.3__2827__AT2G04920.1
Length=994
Score = 1253 bits (678), Expect = 0.0
Identities = 879/975 (90%), Gaps = 18/975 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCT 60
||||| |||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||
Sbjct 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60
Query 61 CTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTC 120
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120
Query 121 ACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCATGTTCTCTTATGGAAGGATTAT 180
|| |||||||||||| || ||||||||||||||||||||| ||| |||||||| ||| |
Sbjct 121 ACCGAGAAGCACTTTCGTGAAGCTCCAAAGCAGTCTCATGCTCTGTTATGGAACGATCGT 180
Query 181 ACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGAGT 240
| |||||||||||||||||||||||||||| || || | | ||||||||||||||||||
Sbjct 181 AGGGTTTGTCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTTTAAGAGT 240
Query 241 GTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTT 300
|||||||| | ||||| | | |||||| ||||||||| |||| |||| |
Sbjct 241 GTACTTAGTATTAAGGA--C-C---------CAGAACCCGTCTATATATCCAATGTTTCT 288
Query 301 CACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAATCCG 360
|||||||| ||||| ||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct 289 CACTGCGACGGTTTATTGTTATGCACCACCGATGATGGTAGACTCGTAGTTTGGAATCCG 348
Query 361 TGTTTGGGGGAAACCAGGTGGATCAACTTTGAAAATGATTACAAGCCATATTCTAGGTTT 420
||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 349 TGTTTGGGGCAAACCAGGTGGATCAACTTTGAAAATGATTACAAGACATACTATAGGTTT 408
Query 421 TCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTTTTGGACA 480
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 409 GCTCTAGGATACAAAAATAACAAATCTTGCCGTAGCTACAAACTCTTGAGGTTTTGGACA 468
Query 481 TCTTATTTGACACCAAACCATATTGGCCTAAG-GTATAATATCTATGAGTTTACCACTGA 539
|||||||| ||||||||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 469 TCTTATTTTACACCAAACCATATTGGTCT-CGTGTATAATATCTATGAGTTTACCTCTGA 527
Query 540 TTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTACTTTCTCATAGAATCAGAGAA 599
||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 528 TTCGTGGAGGGTTCTTCTTGATAAAGTCTCTCTCAACTACTTTCTAATAGAATCAGAGAA 587
Query 600 TGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTTTAGATGAAGAAACAAATTTCTT 659
|||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 588 TGGTGTGTCTATCAAGGGAAATACTTATTGGCTTGCTTTAGATGTCGAAACAAATTTGTT 647
Query 660 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGAA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 648 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGTA 707
Query 720 TTGTGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAA 779
| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 708 TGGTGATACGATGGTTCTATCTGTTGTTAGAGAAGAAAAACTCTTAGTGTCACATCAGAA 767
Query 780 CTTTTGTTCATCAAAGATGGATATTTGGATGACCAATAGAATTGATAGTGAAACCGCCAT 839
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 768 CTTTCGTTCATCAAAGATGGATATTTGGATGACCAATATAATTGATAGTGAAACCGCCTT 827
Query 840 GTCCTGGAAGAGGTACTTTTCTGTGGAGTTTAAAATCCTTAGTA-TGTGTCATTCTT-TA 897
||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| |
Sbjct 828 GTCCTGGAAGAAGTACTTTTCTGTGGAGTTTATAATCCTTAGTACT-TGTCATTCTTGT- 885
Query 898 CCGTTTTGCAATAGTTTTCTGATCGATGAGGAAAAGAAAATTGTCATATCGACTGTAAGG 957
|||||| ||| || |||||||||||||||||| |||||| ||||| |||||| ||||| |
Sbjct 886 CCGTTTAGCATTACTTTTCTGATCGATGAGGAGAAGAAAGTTGTCGTATCGATTGTAATG 945
Query 958 GGTAATGAGAACATG 972
| ||||||||| |||
Sbjct 946 GATAATGAGAATATG 960
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 575 bits (311), Expect = 3e-163
Identities = 486/567 (86%), Gaps = 26/567 (5%)
Strand=Plus/Plus
Query 569 CTCTCAACTACTTTCTCATAGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATT 628
|||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||| |
Sbjct 273 CTCTCAACTACTACCTCTTAGAATCAGAGAATGGTGTGTCTTTGAAGGGAAATACTTACT 332
Query 629 GGCTTGCTTTAGATGAAGAAACAAATTTCTTACTCGGTTTTGATTTTACAATGGAGAGAT 688
|| ||||||||||||| || |||| |||||||||||||||||||||||||| |||||||
Sbjct 333 GGTTTGCTTTAGATGATGACACAAGTTTCTTACTCGGTTTTGATTTTACAACAGAGAGAT 392
Query 689 TTAAACGTTTGTGTCTTCCCTCAAATAAGAA-TTGTGATACGATGGTTCTATCGGTTGTT 747
|||| ||||| | ||||||||||| | |||| ||| |||| ||||||| |||||||| ||
Sbjct 393 TTAACCGTTTTTCTCTTCCCTCAACTGAGAATTTG-GATATGATGGTTTTATCGGTTTTT 451
Query 748 AGAGAAGAAAAACTCTCAGTATCACATCAGAACTTTTGTTCATCAAAGATGGATATTTGG 807
|||||||||||||||||| | |||||| | || |||||| ||||||||||||||||||||
Sbjct 452 AGAGAAGAAAAACTCTCAATGTCACATGAAAAATTTTGTACATCAAAGATGGATATTTGG 511
Query 808 ATGA-CCAATAGAATTGATAGTGAAACCGCCATGTCCTGGAAGAGGTACTTTTCTGTGGA 866
|| | |||||||||||||||||||| ||||| |||||||||| | | ||||||| | ||
Sbjct 512 AT-ACCCAATAGAATTGATAGTGAAGCCGCCTTGTCCTGGAAAAAATCCTTTTCTATAGA 570
Query 867 GTTTAAAATCCTTAGTATGTGTCATTCTTTACCGTTTTGCAATAGTTTTCTGATCGATGA 926
|||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||| |
Sbjct 571 GTTTAAAATCCTTAGTATTTGTCATTATTTTCCGTTTTGCAATAGTTTTATGATCGATAA 630
Query 927 GGAAAAGAAAAT--T-GT-CATA-T-CG---A--C-TGTAAGGGGTAATGAGAACATGGT 974
||| |||||| | | || || | || | | ||||| ||| || ||||||||||
Sbjct 631 GGAGAAGAAAGTGGTCGTGTGTACTGCGACTACTCTTGTAA-GGG--ATAAGAACATGGT 687
Query 975 AAACATTATTGGAGCGTACAATGCGTATTATGCAGAAGTCCCTGTGGAATCTACAAATTG 1034
|| ||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 688 AAGCATTATTGGAGAGGACAATGCGTATTACACAGAAATCCCTGTGGAATCTACAAATTG 747
Query 1035 GCCATGTAGTCCATAT-TTTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 1093
|||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 748 TTCATGTAGTCCATATATTT-TCAATTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 806
Query 1094 AA-AGCAAAGA-A-AATAATAAAACTA 1117
| | |||| | | || ||||||||||
Sbjct 807 GAGA-CAAA-ATAGAAGAATAAAACTA 831
> Ahg930217 jgi|Araly1|930217|scaffold_302674.1
Length=1162
Score = 468 bits (253), Expect = 4e-131
Identities = 670/861 (78%), Gaps = 69/861 (8%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCACCG-GATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATC 59
||||| |||||||| ||| |||||||| ||||| |||||||||||| | || ||||||||
Sbjct 27 ATGTCCGATCTTCC-CCGCGATTTGGTAGAAGAAATACTCTCTAGGATTCCGGCCACATC 85
Query 60 TCTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATT 119
| ||||||||||||| | ||||||||||| ||||||| |||||||||| ||||||| |||
Sbjct 86 TGTGAAACGATTACGATCTACTTGCAAACTATGGAACACTTTATTCAACAACCGAAAATT 145
Query 120 CACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCAT-GTTCTCTTATGGAAGGATT 178
||| |||||| ||||| |||||||||||||| ||||| || |||||| | | |||||| |
Sbjct 146 CACTGAGAAGAACTTTCGTAAAGCTCCAAAGGAGTCT-ATGGTTCTCATGTTGAAGGAGT 204
Query 179 ATACGGTTTGTC-CAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTT-AA 236
|| |||| | | |||||||| ||||||||||| || || | | ||| |||||||| ||
Sbjct 205 GTAGGGTTCG-CTCAATGAGCGTCAATCTCAACGTTGCTCCTCCATCTTTAGAGTTTAAA 263
Query 237 GAGTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGT 296
| ||| |||| |||| |||||||| |||| |||| | ||||||||| ||||| |||||||
Sbjct 264 G-GTGCACTTGGCCTGAAGGATTCTCATTCTAATACCGAACAAGTCAATATAACCAAAGT 322
Query 297 TTTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGA-TC-ATAGACTCT-TAGTTTG 353
|| |||||| |||||||||||||||||||||||| ||| | ||||||| | | |||||
Sbjct 323 TTCTCACTGTGATGGTTTGTTGTTATGCACCACC--GGAGACGATAGACT-TGTGGTTTG 379
Query 354 GAATCCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAA-TGATTACAAGCCATAT 411
||||||||||||||||||||||||||||||| ||| |||| || |||| || |||
Sbjct 380 GAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACAC--AAAACTGGTTACGAGAGATAC 437
Query 412 TCTAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGG 471
|||||||||||| |||| || |||| |||||||| ||||||||||||||||||||| ||
Sbjct 438 TCTAGGTTTTCTTTAGGGTATGAAAACAACAAATCTTGCCGTAGCTACAAAATCTTG-GG 496
Query 472 TT-TTGG-ACATCTTATTT--GAC-ACCAAACCATATTGGCC----T--AAGGTAT-AAT 519
| |||| || | ||||| || || |||| | | |||| | ||||| | ||
Sbjct 497 ATGTTGGGAC--CGTATTTACGATTAC-AAACTAAAC-GGCCGAGGTTTAAGGTTTGAA- 551
Query 520 ATCTATGAGTTTACCACTGATTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTAC 579
|||||||| ||| | |||||||||||| |||||| ||| | ||| |||| ||
Sbjct 552 ATCTATGACATTAACTCTGATTCATGGAAAGTTCTT---GATGAC--CTCGCTCATG-AC 605
Query 580 TTTCTCATAGAATCAG-AGAATGGTGTGTCTTTCAAAGG-AAATACTTATTGGCTTGCTT 637
||||| | | | | ||| | |||||||| ||||| ||| ||||| ||| ||| ||
Sbjct 606 ---CTCATCCTACCGGTA-AATTGCGTGTCTTT-AAAGGGAAACACTTACTGGTTTGGTT 660
Query 638 -TAGATGAAGAAACAAATTTCTTACTCGGTTTTGATTTTACAA-TGGAGAG-ATTTAAAC 694
| || | || ||| || ||||| ||||||||||||||| || |||| ||| ||||
Sbjct 661 CTTT-TGTA-AA-CAACTTA-TTACTTAGTTTTGATTTTACAACTG-AGAGGATT-AAAC 714
Query 695 GTTTGTGTCTTCC-CTCAAATAAGAATTGTGATACGATGGTTCTATCGGTTGTTAGAGAA 753
||| |||||||| | || | | || || | |||| |||||| |||||| |||||
Sbjct 715 ATTTTTGTCTTCCGC-CATTTCGGGATCATGGTTTTATGGCTCTATCAGTTGTTGGAGAA 773
Query 754 GAAAAACTCTCAGTATCACATCAGAACTTTTGTTCATCAAAGATGGA--TATTTGGATGA 811
||| ||| ||||| | ||| | || || | |||||||||||| |||||| | |
Sbjct 774 GAACGACTATCAGTGTTACAACCGA--TTGAGAG-ATCAAAGATGGAGATATTTGT-T-A 828
Query 812 CCAATAGAA-TTGATAGTGAA 831
|||||| || |||||||||||
Sbjct 829 CCAATA-AAGTTGATAGTGAA 848
Score = 56.5 bits (30), Expect = 4e-07
Identities = 37/40 (93%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 1045 CCATATT-TTGTCAGTTATGTTCCAAGTTTGGTTCAAATC 1083
|||| || || |||||||||||||||||||||||||||||
Sbjct 1098 CCAT-TTATTTTCAGTTATGTTCCAAGTTTGGTTCAAATC 1136
> Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173
Length=972
Score = 394 bits (213), Expect = 8e-109
Identities = 382/462 (83%), Gaps = 18/462 (4%)
Strand=Plus/Plus
Query 19 GATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAACGATTACGGTTT 78
|||||||| || || ||||| |||||||| |||||||||||| | ||||||||||| |
Sbjct 22 GATTTGGTAGAGGAAATACTATCTAGGGTTCCAGCCACATCTTTCAAACGATTACGATCG 81
Query 79 ACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTCACAGAGAAGCACTTT-TG 137
||||||| || ||||||| || |||| ||| ||| ||||||||| |||||||||||| |
Sbjct 82 ACTTGCAGACGATGGAACGCTCTATTGAAAGACCCAAGATTCACCGAGAAGCACTTTCT- 140
Query 138 TAAAGCTCCAAAGCAGTCTCAT-GTTCTCTTATGGAAGGATTATACGGTTTGTCCAATGA 196
|||||| |||||| ||||| || |||||| | | ||| || |||| |||||||||||| |
Sbjct 141 TAAAGCACCAAAGGAGTCT-ATGGTTCTCATGTTGAAAGAGTATAGGGTTTGTCCAATAA 199
Query 197 GCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTT-AAGAGTGTACTTAGCCTAAAG 255
|| ||||||||||| || || | | |||||||||||| ||| ||| |||| |||||||
Sbjct 200 GCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTCAAG-GTGCACTTGGCCTAAAT 258
Query 256 GATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTTCACTGCGATGGTTTG 315
||||| |||| ||||| |||||||||| | ||| || |||||||||||||| ||||||||
Sbjct 259 GATTCTCATTCTAATTTAGAACAAGTCAAGATAACCGAAGTTTTTCACTGCAATGGTTTG 318
Query 316 TTGTTATGCACCACCAAGGATCA-TAGACTCTTAGTTTGGAATCCGTGTTTGGGGGAAAC 374
|||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 319 TTGTTATGCACCACCAAGGA-CAATACACTCTTGGTTTGGAATCCGTGTTTGGGGGAAAC 377
Query 375 CAGGTGGATC-AACTTTGAAAAT-GATTACAAGCCATATT-CT--AGGTTTTCTCTAGGA 429
|| ||||||| |||| ||| | |||||| | | | || | |||||||||||||
Sbjct 378 CAAGTGGATCCAACTC--AAAGTAGATTACGGGAGAAACGGCTCCAAGTTTTCTCTAGGA 435
Query 430 TACA---AAAATAACAAATCATGCCGTAGCTACAAAATCTTG 468
|| | |||| ||| |||| |||||||||||||||||||||
Sbjct 436 TATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTTG 477
> Ahg930838 jgi|Araly1|930838|scaffold_303295.1
Length=1166
Score = 390 bits (211), Expect = 1e-107
Identities = 652/856 (76%), Gaps = 66/856 (8%)
Strand=Plus/Plus
Query 7 GATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAA 66
||||| || ||||||| | || || ||||||| ||| |||||||||||||||| |||
Sbjct 34 GATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAGTCCCAGCCACATCTCACAAA 93
Query 67 CGA-TTACGGTTTACTTGCAAACAATGGAAC-TCTTT-AT--TCAAAAACCGAAGATTCA 121
| | ||| | | ||||||||||| ||||||| | ||| || ||||||||||||||||
Sbjct 94 C-AGTTAAGATCTACTTGCAAACTATGGAACGT-TTTAATAAAGAAAAACCGAAGATTCA 151
Query 122 CAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTC-TCATGTTCT-CT-TATGGAAGGATT 178
| || ||||||||| ||||| |||||||||| | || || | | ||| | |||
Sbjct 152 CCGAAAAGCACTTTCACGAAGCTTCAAAGCAGTCAGC-GGTACTGATGT-TGG-ATGATC 208
Query 179 ATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGA 238
|| |||| || |||||| | | ||||||||| |||||| | | ||||||||||||||||
Sbjct 209 GTAAGGTTCGTTCAATGAACGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTTTAAGA 268
Query 239 GTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCT-ATATAGCCAAAGTT 297
||| ||||||||||||||||||||||| ||||| ||||||||| | ||||||| | ||||
Sbjct 269 GTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT-TAATATAGCTAGAGTT 327
Query 298 TTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAAT 357
||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 328 TTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGGTTTGGAAT 387
Query 358 CCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAA-TGATTACAAGC-C-ATATTC 413
|||| ||| |||| ||||||||||||| |||| ||| |||||| ||| | | ||
Sbjct 388 CCGTATTTTGGGGTAACCAGGTGGATCCAACTC--AAATCTGATTATAAGAGCGAC-TT- 443
Query 414 TAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTT 473
|| | | ||||||||||| | |||||||||| || |||| ||||||||||||||||
Sbjct 444 TACCTATGCTCTAGGATACGTAGATAACAAATCTTGTCGTACCTACAAAATCTTGAGGCC 503
Query 474 TTGG-ACAT-CTTATTTGACACCAAACCATATTGGCCTAAGGTATAATATCTATGAGTTT 531
|||| | || | || | || || | |||| | | | ||| |||||| |||
Sbjct 504 TTGGGAAATACCTA---G-CATTGAAGG-TCTTGGGTTC-G--A-AAT--CTATGACTTT 552
Query 532 ACCACTGATTCATGGAGGGTTC-T-TATTGATAAAGTCTCTCTC--A-ACTACTTTCTCA 586
| || ||||||||||||||| | || | ||| ||| || | | || || | ||
Sbjct 553 AGTTCTAATTCATGGAGGGTTCCTCTAA-G-TAACGTCGCTTTATTATAC-ACCTACT-- 607
Query 587 TAGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTT-TAGATGAA 645
| || || || | |||||||||||| || ||||||||||| |||||| || || || |
Sbjct 608 TCGATTCTGATACTGGTGTGTCTTTGAAGGGAAATACTTACTGGCTTAATTATA-AT-A- 664
Query 646 GAAACAAATTTCTTACTCGGTTTTGATTTTACA-ATGGAGAGATTTAAACGTTTGTGTCT 704
| | | |||||||| || ||||||||||| | | |||||||||||| ||||| ||
Sbjct 665 GTGA-AGATTTCTTATTCCCTTTTGATTTTA-AGACAGAGAGATTTAAATGTTTGC--CT 720
Query 705 TCC-CTCAA-ATAAGAATTG-TGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACT 761
|| | ||| || || | | || |||| | |||||||| ||||||||||||||| ||||
Sbjct 721 -CCGC-CAACATG-GA-TCGATGGTACGGTAGTTCTATCAGTTGTTAGAGAAGAACAACT 776
Query 762 CTCAGTATCACATCAGAACTTTT-GTTCATCAAAGATGGATATTTGGATGACCAATAGA- 819
|||| | | | || | || | | | ||||||||||||| || ||||| |||| || |
Sbjct 777 CTCACTTTTATATGAAAA-TAATAGAACATCAAAGATGGAGATATGGATTACCACTA-AT 834
Query 820 ATTGATAGTGAAACCG 835
||||||| |||| |||
Sbjct 835 ATTGATACTGAAGCCG 850
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 372 bits (201), Expect = 4e-102
Identities = 663/874 (76%), Gaps = 79/874 (9%)
Strand=Plus/Plus
Query 1 ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCT 60
||||| |||||||| |||||||| || || |||||| | ||||| ||||||||||||
Sbjct 24 ATGTCCGATCTTCCTTTAGATTTGGTAGAGGAAATACTCGCAAGGGTTCCAGCCACATCT 83
Query 61 CTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAA-ACCGAAGATT 119
| ||||||||||| | ||||| | || |||| || ||||||| |||| ||| || |||
Sbjct 84 TTCAAACGATTACGATCGACTTGTAGACGATGGGACGCTTTATT-AAAAGACCAAAAATT 142
Query 120 CACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCAT-GTTCTCTTATGGAAGGATT 178
||| |||||||||| | ||||||| |||||| ||||| || |||||| | | ||| || |
Sbjct 143 CACTGAGAAGCACTCTCGTAAAGCACCAAAGGAGTCT-ATGGTTCTCATGTTGAAAGAGT 201
Query 179 ATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTT-AAG 237
||| |||||||||||| ||| ||||||||||| || || | | |||||||||||| |||
Sbjct 202 ATAGGGTTTGTCCAATAAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAAAG 261
Query 238 AGTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTT 297
||| |||| | | |||| |||| || ||||||||||||| | ||| || |||||
Sbjct 262 -GTGCACTT-G-GT----TATTCCCATTCTAGTTCAGAACAAGTCGAGATAACCGAAGTT 314
Query 298 TTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATC-ATAGACTCTTAGTTTGGAA 356
|||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||
Sbjct 315 ATTCACTGCGATGGTTTGTTGTTATGCACCACCAATGA-CAATAGACTCTTGGTTTGGAA 373
Query 357 TCCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAAT-GATTACA--AGCCA-TAT 411
|||||||||||||||||||| ||| ||| |||| ||| | |||||| || | ||
Sbjct 374 TCCGTGTTTGGGGGAAACCAAGTGTATCCAACTC--AAAGTTGATTACGGGAGAAACTAC 431
Query 412 TCTAGGTTTTCTCTAGGATACA---AAAATAACAAATCATGCCGTAGCTACAAAATCTTG 468
|| || ||| |||||||||| | |||| ||| |||| |||||||||||||||||||||
Sbjct 432 TCCAGCTTTGCTCTAGGATATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTTG 491
Query 469 AGGTTTTGGAC-A-TCTT-ATTT-GA--CACCAAA-CC--ATATTGGCCTAAGGTAT-AA 518
|| ||||| | | ||| || || || || | | || | ||| | ||
Sbjct 492 TGGAGTTGGAGTAGTAAAGATTACGAATCATCACCGCCCGAAAGAGGTTTGGGGTTTGAA 551
Query 519 TATCTATGAGTTTACCACTGATTCATGGAGGGTTCTT-ATTGA--T-AA--A-GTCTC-T 570
|| || ||||||| | |||||||||||||||||||| || || | || | | ||| |
Sbjct 552 -ATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT-GACATTAATCACGACTCCT 609
Query 571 C--TCAA-CTACTTTCTCATAGAATCAGAGAA-TGGTGTGTCTTTCAAAGGAAATACTTA 626
|||| | || ||| | || || ||| ||| |||||||| || |||||||||||
Sbjct 610 TGGTCAAGC-ACAA-CTCC--GTATTAG-GAAGTGGCGTGTCTTTGAAGGGAAATACTTA 664
Query 627 -TTGGCTT-GCTT-T-A-GATGAAGAAA---CAA-ATTTCTTACTCG-GTTTTGATTTTA 676
||| || || | | | | |||||||| | | |||| ||||| |||| |||||||
Sbjct 665 CTTG--TTCGCGTATGATGTTGAAGAAAATTCTAGATTT-TTACTTATGTTT-GATTTTA 720
Query 677 CAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAAT--AAGAA-TTGTGAT-ACGATG 732
||| |||||||| |||||| | || ||||| || | |||| ||| | | || |||
Sbjct 721 CAACAGAGAGATTGAAACGTCTATGCCTTCCG-CATTTCCAAGATGTTG-G-TCAC-ATG 776
Query 733 GTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAACTTTTGTT-CATC 791
|||||||| ||||||||||||||| | |||||| ||| |||| || || | | ||||
Sbjct 777 GTTCTATCAGTTGTTAGAGAAGAACACCTCTCAATATTACATTGGA-CTCGTACTACATC 835
Query 792 AAAGATGGATATTTGGATGACCAATAGA-ATTGA 824
||||||||| || ||||| ||||||| | |||||
Sbjct 836 AAAGATGGAGATATGGATAACCAATA-ACATTGA 868
> Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011
Length=1152
Score = 78.7 bits (42), Expect = 9e-14
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand=Plus/Plus
Query 1044 TCCATATT-TTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTAAAAGCAAA- 1101
||||| || || ||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1086 TCCAT-TTATTTTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTAGATGCAAAA 1144
Query 1102 GAAAATAA 1109
|| |||||
Sbjct 1145 GAGAATAA 1152
> Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511
Length=708
Score = 58.4 bits (31), Expect = 1e-07
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 1050 TTTTG-TCAGTTATGTTCCAAGTTTGGTTCAAATCCAG 1086
||||| ||| ||||||||||||||||||||||||||||
Sbjct 668 TTTTGCTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 705
> Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1
Length=1546
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1060 TATGTTCCAAGTTTGGTTCAAATCCAGCAA 1089
||||||||||||||||||||||||||||||
Sbjct 1458 TATGTTCCAAGTTTGGTTCAAATCCAGCAA 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5