BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04920.1 Length=1131 Score E Sequences producing significant alignments: (Bits) Value Ahg480126 jgi|Araly1|480126|fgenesh2_kg.3__2827__AT2G04920.1 1253 0.0 Ahg930816 jgi|Araly1|930816|scaffold_303273.1 575 3e-163 Ahg930217 jgi|Araly1|930217|scaffold_302674.1 468 4e-131 Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173 394 8e-109 Ahg930838 jgi|Araly1|930838|scaffold_303295.1 390 1e-107 Ahg930261 jgi|Araly1|930261|scaffold_302718.1 372 4e-102 Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 78.7 9e-14 Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 58.4 1e-07 Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 56.5 4e-07 > Ahg480126 jgi|Araly1|480126|fgenesh2_kg.3__2827__AT2G04920.1 Length=994 Score = 1253 bits (678), Expect = 0.0 Identities = 879/975 (90%), Gaps = 18/975 (2%) Strand=Plus/Plus Query 1 ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCT 60 ||||| |||||||||||||||||||| ||||| |||||||| ||| |||||||||||||| Sbjct 1 ATGTCCGATCTTCCACCGGATTTGGTAGAAGAAATACTCTCAAGGATCCCAGCCACATCT 60 Query 61 CTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTC 120 |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 CTGAAACGATTACGATCCACTTGCAAACAATGGAACTCTTTATTCAAGAACCGAAGATTC 120 Query 121 ACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCATGTTCTCTTATGGAAGGATTAT 180 || |||||||||||| || ||||||||||||||||||||| ||| |||||||| ||| | Sbjct 121 ACCGAGAAGCACTTTCGTGAAGCTCCAAAGCAGTCTCATGCTCTGTTATGGAACGATCGT 180 Query 181 ACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGAGT 240 | |||||||||||||||||||||||||||| || || | | |||||||||||||||||| Sbjct 181 AGGGTTTGTCCAATGAGCATCAATCTCAACGTTGCTCCTCCATCTATAGAGTTTAAGAGT 240 Query 241 GTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTT 300 |||||||| | ||||| | | |||||| ||||||||| |||| |||| | Sbjct 241 GTACTTAGTATTAAGGA--C-C---------CAGAACCCGTCTATATATCCAATGTTTCT 288 Query 301 CACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAATCCG 360 |||||||| ||||| ||||||||||||||| | ||| ||||||| |||||||||||||| Sbjct 289 CACTGCGACGGTTTATTGTTATGCACCACCGATGATGGTAGACTCGTAGTTTGGAATCCG 348 Query 361 TGTTTGGGGGAAACCAGGTGGATCAACTTTGAAAATGATTACAAGCCATATTCTAGGTTT 420 ||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| Sbjct 349 TGTTTGGGGCAAACCAGGTGGATCAACTTTGAAAATGATTACAAGACATACTATAGGTTT 408 Query 421 TCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTTTTGGACA 480 ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 409 GCTCTAGGATACAAAAATAACAAATCTTGCCGTAGCTACAAACTCTTGAGGTTTTGGACA 468 Query 481 TCTTATTTGACACCAAACCATATTGGCCTAAG-GTATAATATCTATGAGTTTACCACTGA 539 |||||||| ||||||||||||||||| || | |||||||||||||||||||||| |||| Sbjct 469 TCTTATTTTACACCAAACCATATTGGTCT-CGTGTATAATATCTATGAGTTTACCTCTGA 527 Query 540 TTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTACTTTCTCATAGAATCAGAGAA 599 ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 528 TTCGTGGAGGGTTCTTCTTGATAAAGTCTCTCTCAACTACTTTCTAATAGAATCAGAGAA 587 Query 600 TGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTTTAGATGAAGAAACAAATTTCTT 659 |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct 588 TGGTGTGTCTATCAAGGGAAATACTTATTGGCTTGCTTTAGATGTCGAAACAAATTTGTT 647 Query 660 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGAA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 648 ACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGTA 707 Query 720 TTGTGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAA 779 | ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 708 TGGTGATACGATGGTTCTATCTGTTGTTAGAGAAGAAAAACTCTTAGTGTCACATCAGAA 767 Query 780 CTTTTGTTCATCAAAGATGGATATTTGGATGACCAATAGAATTGATAGTGAAACCGCCAT 839 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 768 CTTTCGTTCATCAAAGATGGATATTTGGATGACCAATATAATTGATAGTGAAACCGCCTT 827 Query 840 GTCCTGGAAGAGGTACTTTTCTGTGGAGTTTAAAATCCTTAGTA-TGTGTCATTCTT-TA 897 ||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| | Sbjct 828 GTCCTGGAAGAAGTACTTTTCTGTGGAGTTTATAATCCTTAGTACT-TGTCATTCTTGT- 885 Query 898 CCGTTTTGCAATAGTTTTCTGATCGATGAGGAAAAGAAAATTGTCATATCGACTGTAAGG 957 |||||| ||| || |||||||||||||||||| |||||| ||||| |||||| ||||| | Sbjct 886 CCGTTTAGCATTACTTTTCTGATCGATGAGGAGAAGAAAGTTGTCGTATCGATTGTAATG 945 Query 958 GGTAATGAGAACATG 972 | ||||||||| ||| Sbjct 946 GATAATGAGAATATG 960 > Ahg930816 jgi|Araly1|930816|scaffold_303273.1 Length=847 Score = 575 bits (311), Expect = 3e-163 Identities = 486/567 (86%), Gaps = 26/567 (5%) Strand=Plus/Plus Query 569 CTCTCAACTACTTTCTCATAGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATT 628 |||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||| | Sbjct 273 CTCTCAACTACTACCTCTTAGAATCAGAGAATGGTGTGTCTTTGAAGGGAAATACTTACT 332 Query 629 GGCTTGCTTTAGATGAAGAAACAAATTTCTTACTCGGTTTTGATTTTACAATGGAGAGAT 688 || ||||||||||||| || |||| |||||||||||||||||||||||||| ||||||| Sbjct 333 GGTTTGCTTTAGATGATGACACAAGTTTCTTACTCGGTTTTGATTTTACAACAGAGAGAT 392 Query 689 TTAAACGTTTGTGTCTTCCCTCAAATAAGAA-TTGTGATACGATGGTTCTATCGGTTGTT 747 |||| ||||| | ||||||||||| | |||| ||| |||| ||||||| |||||||| || Sbjct 393 TTAACCGTTTTTCTCTTCCCTCAACTGAGAATTTG-GATATGATGGTTTTATCGGTTTTT 451 Query 748 AGAGAAGAAAAACTCTCAGTATCACATCAGAACTTTTGTTCATCAAAGATGGATATTTGG 807 |||||||||||||||||| | |||||| | || |||||| |||||||||||||||||||| Sbjct 452 AGAGAAGAAAAACTCTCAATGTCACATGAAAAATTTTGTACATCAAAGATGGATATTTGG 511 Query 808 ATGA-CCAATAGAATTGATAGTGAAACCGCCATGTCCTGGAAGAGGTACTTTTCTGTGGA 866 || | |||||||||||||||||||| ||||| |||||||||| | | ||||||| | || Sbjct 512 AT-ACCCAATAGAATTGATAGTGAAGCCGCCTTGTCCTGGAAAAAATCCTTTTCTATAGA 570 Query 867 GTTTAAAATCCTTAGTATGTGTCATTCTTTACCGTTTTGCAATAGTTTTCTGATCGATGA 926 |||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||| | Sbjct 571 GTTTAAAATCCTTAGTATTTGTCATTATTTTCCGTTTTGCAATAGTTTTATGATCGATAA 630 Query 927 GGAAAAGAAAAT--T-GT-CATA-T-CG---A--C-TGTAAGGGGTAATGAGAACATGGT 974 ||| |||||| | | || || | || | | ||||| ||| || |||||||||| Sbjct 631 GGAGAAGAAAGTGGTCGTGTGTACTGCGACTACTCTTGTAA-GGG--ATAAGAACATGGT 687 Query 975 AAACATTATTGGAGCGTACAATGCGTATTATGCAGAAGTCCCTGTGGAATCTACAAATTG 1034 || ||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||| Sbjct 688 AAGCATTATTGGAGAGGACAATGCGTATTACACAGAAATCCCTGTGGAATCTACAAATTG 747 Query 1035 GCCATGTAGTCCATAT-TTTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 1093 |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 748 TTCATGTAGTCCATATATTT-TCAATTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 806 Query 1094 AA-AGCAAAGA-A-AATAATAAAACTA 1117 | | |||| | | || |||||||||| Sbjct 807 GAGA-CAAA-ATAGAAGAATAAAACTA 831 > Ahg930217 jgi|Araly1|930217|scaffold_302674.1 Length=1162 Score = 468 bits (253), Expect = 4e-131 Identities = 670/861 (78%), Gaps = 69/861 (8%) Strand=Plus/Plus Query 1 ATGTCTGATCTTCCACCG-GATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATC 59 ||||| |||||||| ||| |||||||| ||||| |||||||||||| | || |||||||| Sbjct 27 ATGTCCGATCTTCC-CCGCGATTTGGTAGAAGAAATACTCTCTAGGATTCCGGCCACATC 85 Query 60 TCTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATT 119 | ||||||||||||| | ||||||||||| ||||||| |||||||||| ||||||| ||| Sbjct 86 TGTGAAACGATTACGATCTACTTGCAAACTATGGAACACTTTATTCAACAACCGAAAATT 145 Query 120 CACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCAT-GTTCTCTTATGGAAGGATT 178 ||| |||||| ||||| |||||||||||||| ||||| || |||||| | | |||||| | Sbjct 146 CACTGAGAAGAACTTTCGTAAAGCTCCAAAGGAGTCT-ATGGTTCTCATGTTGAAGGAGT 204 Query 179 ATACGGTTTGTC-CAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTT-AA 236 || |||| | | |||||||| ||||||||||| || || | | ||| |||||||| || Sbjct 205 GTAGGGTTCG-CTCAATGAGCGTCAATCTCAACGTTGCTCCTCCATCTTTAGAGTTTAAA 263 Query 237 GAGTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGT 296 | ||| |||| |||| |||||||| |||| |||| | ||||||||| ||||| ||||||| Sbjct 264 G-GTGCACTTGGCCTGAAGGATTCTCATTCTAATACCGAACAAGTCAATATAACCAAAGT 322 Query 297 TTTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGA-TC-ATAGACTCT-TAGTTTG 353 || |||||| |||||||||||||||||||||||| ||| | ||||||| | | ||||| Sbjct 323 TTCTCACTGTGATGGTTTGTTGTTATGCACCACC--GGAGACGATAGACT-TGTGGTTTG 379 Query 354 GAATCCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAA-TGATTACAAGCCATAT 411 ||||||||||||||||||||||||||||||| ||| |||| || |||| || ||| Sbjct 380 GAATCCGTGTTTGGGGGAAACCAGGTGGATCCAACAC--AAAACTGGTTACGAGAGATAC 437 Query 412 TCTAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGG 471 |||||||||||| |||| || |||| |||||||| ||||||||||||||||||||| || Sbjct 438 TCTAGGTTTTCTTTAGGGTATGAAAACAACAAATCTTGCCGTAGCTACAAAATCTTG-GG 496 Query 472 TT-TTGG-ACATCTTATTT--GAC-ACCAAACCATATTGGCC----T--AAGGTAT-AAT 519 | |||| || | ||||| || || |||| | | |||| | ||||| | || Sbjct 497 ATGTTGGGAC--CGTATTTACGATTAC-AAACTAAAC-GGCCGAGGTTTAAGGTTTGAA- 551 Query 520 ATCTATGAGTTTACCACTGATTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTAC 579 |||||||| ||| | |||||||||||| |||||| ||| | ||| |||| || Sbjct 552 ATCTATGACATTAACTCTGATTCATGGAAAGTTCTT---GATGAC--CTCGCTCATG-AC 605 Query 580 TTTCTCATAGAATCAG-AGAATGGTGTGTCTTTCAAAGG-AAATACTTATTGGCTTGCTT 637 ||||| | | | | ||| | |||||||| ||||| ||| ||||| ||| ||| || Sbjct 606 ---CTCATCCTACCGGTA-AATTGCGTGTCTTT-AAAGGGAAACACTTACTGGTTTGGTT 660 Query 638 -TAGATGAAGAAACAAATTTCTTACTCGGTTTTGATTTTACAA-TGGAGAG-ATTTAAAC 694 | || | || ||| || ||||| ||||||||||||||| || |||| ||| |||| Sbjct 661 CTTT-TGTA-AA-CAACTTA-TTACTTAGTTTTGATTTTACAACTG-AGAGGATT-AAAC 714 Query 695 GTTTGTGTCTTCC-CTCAAATAAGAATTGTGATACGATGGTTCTATCGGTTGTTAGAGAA 753 ||| |||||||| | || | | || || | |||| |||||| |||||| ||||| Sbjct 715 ATTTTTGTCTTCCGC-CATTTCGGGATCATGGTTTTATGGCTCTATCAGTTGTTGGAGAA 773 Query 754 GAAAAACTCTCAGTATCACATCAGAACTTTTGTTCATCAAAGATGGA--TATTTGGATGA 811 ||| ||| ||||| | ||| | || || | |||||||||||| |||||| | | Sbjct 774 GAACGACTATCAGTGTTACAACCGA--TTGAGAG-ATCAAAGATGGAGATATTTGT-T-A 828 Query 812 CCAATAGAA-TTGATAGTGAA 831 |||||| || ||||||||||| Sbjct 829 CCAATA-AAGTTGATAGTGAA 848 Score = 56.5 bits (30), Expect = 4e-07 Identities = 37/40 (93%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 1045 CCATATT-TTGTCAGTTATGTTCCAAGTTTGGTTCAAATC 1083 |||| || || ||||||||||||||||||||||||||||| Sbjct 1098 CCAT-TTATTTTCAGTTATGTTCCAAGTTTGGTTCAAATC 1136 > Ahg342410 jgi|Araly1|342410|fgenesh1_pg.C_scaffold_3002173 Length=972 Score = 394 bits (213), Expect = 8e-109 Identities = 382/462 (83%), Gaps = 18/462 (4%) Strand=Plus/Plus Query 19 GATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAACGATTACGGTTT 78 |||||||| || || ||||| |||||||| |||||||||||| | ||||||||||| | Sbjct 22 GATTTGGTAGAGGAAATACTATCTAGGGTTCCAGCCACATCTTTCAAACGATTACGATCG 81 Query 79 ACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTCACAGAGAAGCACTTT-TG 137 ||||||| || ||||||| || |||| ||| ||| ||||||||| |||||||||||| | Sbjct 82 ACTTGCAGACGATGGAACGCTCTATTGAAAGACCCAAGATTCACCGAGAAGCACTTTCT- 140 Query 138 TAAAGCTCCAAAGCAGTCTCAT-GTTCTCTTATGGAAGGATTATACGGTTTGTCCAATGA 196 |||||| |||||| ||||| || |||||| | | ||| || |||| |||||||||||| | Sbjct 141 TAAAGCACCAAAGGAGTCT-ATGGTTCTCATGTTGAAAGAGTATAGGGTTTGTCCAATAA 199 Query 197 GCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTT-AAGAGTGTACTTAGCCTAAAG 255 || ||||||||||| || || | | |||||||||||| ||| ||| |||| ||||||| Sbjct 200 GCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTCAAG-GTGCACTTGGCCTAAAT 258 Query 256 GATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTTCACTGCGATGGTTTG 315 ||||| |||| ||||| |||||||||| | ||| || |||||||||||||| |||||||| Sbjct 259 GATTCTCATTCTAATTTAGAACAAGTCAAGATAACCGAAGTTTTTCACTGCAATGGTTTG 318 Query 316 TTGTTATGCACCACCAAGGATCA-TAGACTCTTAGTTTGGAATCCGTGTTTGGGGGAAAC 374 |||||||||||||||||||| || || |||||| |||||||||||||||||||||||||| Sbjct 319 TTGTTATGCACCACCAAGGA-CAATACACTCTTGGTTTGGAATCCGTGTTTGGGGGAAAC 377 Query 375 CAGGTGGATC-AACTTTGAAAAT-GATTACAAGCCATATT-CT--AGGTTTTCTCTAGGA 429 || ||||||| |||| ||| | |||||| | | | || | ||||||||||||| Sbjct 378 CAAGTGGATCCAACTC--AAAGTAGATTACGGGAGAAACGGCTCCAAGTTTTCTCTAGGA 435 Query 430 TACA---AAAATAACAAATCATGCCGTAGCTACAAAATCTTG 468 || | |||| ||| |||| ||||||||||||||||||||| Sbjct 436 TATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTTG 477 > Ahg930838 jgi|Araly1|930838|scaffold_303295.1 Length=1166 Score = 390 bits (211), Expect = 1e-107 Identities = 652/856 (76%), Gaps = 66/856 (8%) Strand=Plus/Plus Query 7 GATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAA 66 ||||| || ||||||| | || || ||||||| ||| |||||||||||||||| ||| Sbjct 34 GATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAGTCCCAGCCACATCTCACAAA 93 Query 67 CGA-TTACGGTTTACTTGCAAACAATGGAAC-TCTTT-AT--TCAAAAACCGAAGATTCA 121 | | ||| | | ||||||||||| ||||||| | ||| || |||||||||||||||| Sbjct 94 C-AGTTAAGATCTACTTGCAAACTATGGAACGT-TTTAATAAAGAAAAACCGAAGATTCA 151 Query 122 CAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTC-TCATGTTCT-CT-TATGGAAGGATT 178 | || ||||||||| ||||| |||||||||| | || || | | ||| | ||| Sbjct 152 CCGAAAAGCACTTTCACGAAGCTTCAAAGCAGTCAGC-GGTACTGATGT-TGG-ATGATC 208 Query 179 ATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGA 238 || |||| || |||||| | | ||||||||| |||||| | | |||||||||||||||| Sbjct 209 GTAAGGTTCGTTCAATGAACGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTTTAAGA 268 Query 239 GTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCT-ATATAGCCAAAGTT 297 ||| ||||||||||||||||||||||| ||||| ||||||||| | ||||||| | |||| Sbjct 269 GTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT-TAATATAGCTAGAGTT 327 Query 298 TTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAAT 357 ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| Sbjct 328 TTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGGTTTGGAAT 387 Query 358 CCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAA-TGATTACAAGC-C-ATATTC 413 |||| ||| |||| ||||||||||||| |||| ||| |||||| ||| | | || Sbjct 388 CCGTATTTTGGGGTAACCAGGTGGATCCAACTC--AAATCTGATTATAAGAGCGAC-TT- 443 Query 414 TAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTT 473 || | | ||||||||||| | |||||||||| || |||| |||||||||||||||| Sbjct 444 TACCTATGCTCTAGGATACGTAGATAACAAATCTTGTCGTACCTACAAAATCTTGAGGCC 503 Query 474 TTGG-ACAT-CTTATTTGACACCAAACCATATTGGCCTAAGGTATAATATCTATGAGTTT 531 |||| | || | || | || || | |||| | | | ||| |||||| ||| Sbjct 504 TTGGGAAATACCTA---G-CATTGAAGG-TCTTGGGTTC-G--A-AAT--CTATGACTTT 552 Query 532 ACCACTGATTCATGGAGGGTTC-T-TATTGATAAAGTCTCTCTC--A-ACTACTTTCTCA 586 | || ||||||||||||||| | || | ||| ||| || | | || || | || Sbjct 553 AGTTCTAATTCATGGAGGGTTCCTCTAA-G-TAACGTCGCTTTATTATAC-ACCTACT-- 607 Query 587 TAGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTT-TAGATGAA 645 | || || || | |||||||||||| || ||||||||||| |||||| || || || | Sbjct 608 TCGATTCTGATACTGGTGTGTCTTTGAAGGGAAATACTTACTGGCTTAATTATA-AT-A- 664 Query 646 GAAACAAATTTCTTACTCGGTTTTGATTTTACA-ATGGAGAGATTTAAACGTTTGTGTCT 704 | | | |||||||| || ||||||||||| | | |||||||||||| ||||| || Sbjct 665 GTGA-AGATTTCTTATTCCCTTTTGATTTTA-AGACAGAGAGATTTAAATGTTTGC--CT 720 Query 705 TCC-CTCAA-ATAAGAATTG-TGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACT 761 || | ||| || || | | || |||| | |||||||| ||||||||||||||| |||| Sbjct 721 -CCGC-CAACATG-GA-TCGATGGTACGGTAGTTCTATCAGTTGTTAGAGAAGAACAACT 776 Query 762 CTCAGTATCACATCAGAACTTTT-GTTCATCAAAGATGGATATTTGGATGACCAATAGA- 819 |||| | | | || | || | | | ||||||||||||| || ||||| |||| || | Sbjct 777 CTCACTTTTATATGAAAA-TAATAGAACATCAAAGATGGAGATATGGATTACCACTA-AT 834 Query 820 ATTGATAGTGAAACCG 835 ||||||| |||| ||| Sbjct 835 ATTGATACTGAAGCCG 850 > Ahg930261 jgi|Araly1|930261|scaffold_302718.1 Length=1043 Score = 372 bits (201), Expect = 4e-102 Identities = 663/874 (76%), Gaps = 79/874 (9%) Strand=Plus/Plus Query 1 ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCT 60 ||||| |||||||| |||||||| || || |||||| | ||||| |||||||||||| Sbjct 24 ATGTCCGATCTTCCTTTAGATTTGGTAGAGGAAATACTCGCAAGGGTTCCAGCCACATCT 83 Query 61 CTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAA-ACCGAAGATT 119 | ||||||||||| | ||||| | || |||| || ||||||| |||| ||| || ||| Sbjct 84 TTCAAACGATTACGATCGACTTGTAGACGATGGGACGCTTTATT-AAAAGACCAAAAATT 142 Query 120 CACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCAT-GTTCTCTTATGGAAGGATT 178 ||| |||||||||| | ||||||| |||||| ||||| || |||||| | | ||| || | Sbjct 143 CACTGAGAAGCACTCTCGTAAAGCACCAAAGGAGTCT-ATGGTTCTCATGTTGAAAGAGT 201 Query 179 ATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTT-AAG 237 ||| |||||||||||| ||| ||||||||||| || || | | |||||||||||| ||| Sbjct 202 ATAGGGTTTGTCCAATAAGCGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAAAG 261 Query 238 AGTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTT 297 ||| |||| | | |||| |||| || ||||||||||||| | ||| || ||||| Sbjct 262 -GTGCACTT-G-GT----TATTCCCATTCTAGTTCAGAACAAGTCGAGATAACCGAAGTT 314 Query 298 TTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATC-ATAGACTCTTAGTTTGGAA 356 |||||||||||||||||||||||||||||||||| || | |||||||||| |||||||| Sbjct 315 ATTCACTGCGATGGTTTGTTGTTATGCACCACCAATGA-CAATAGACTCTTGGTTTGGAA 373 Query 357 TCCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAAT-GATTACA--AGCCA-TAT 411 |||||||||||||||||||| ||| ||| |||| ||| | |||||| || | || Sbjct 374 TCCGTGTTTGGGGGAAACCAAGTGTATCCAACTC--AAAGTTGATTACGGGAGAAACTAC 431 Query 412 TCTAGGTTTTCTCTAGGATACA---AAAATAACAAATCATGCCGTAGCTACAAAATCTTG 468 || || ||| |||||||||| | |||| ||| |||| ||||||||||||||||||||| Sbjct 432 TCCAGCTTTGCTCTAGGATATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTTG 491 Query 469 AGGTTTTGGAC-A-TCTT-ATTT-GA--CACCAAA-CC--ATATTGGCCTAAGGTAT-AA 518 || ||||| | | ||| || || || || | | || | ||| | || Sbjct 492 TGGAGTTGGAGTAGTAAAGATTACGAATCATCACCGCCCGAAAGAGGTTTGGGGTTTGAA 551 Query 519 TATCTATGAGTTTACCACTGATTCATGGAGGGTTCTT-ATTGA--T-AA--A-GTCTC-T 570 || || ||||||| | |||||||||||||||||||| || || | || | | ||| | Sbjct 552 -ATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT-GACATTAATCACGACTCCT 609 Query 571 C--TCAA-CTACTTTCTCATAGAATCAGAGAA-TGGTGTGTCTTTCAAAGGAAATACTTA 626 |||| | || ||| | || || ||| ||| |||||||| || ||||||||||| Sbjct 610 TGGTCAAGC-ACAA-CTCC--GTATTAG-GAAGTGGCGTGTCTTTGAAGGGAAATACTTA 664 Query 627 -TTGGCTT-GCTT-T-A-GATGAAGAAA---CAA-ATTTCTTACTCG-GTTTTGATTTTA 676 ||| || || | | | | |||||||| | | |||| ||||| |||| ||||||| Sbjct 665 CTTG--TTCGCGTATGATGTTGAAGAAAATTCTAGATTT-TTACTTATGTTT-GATTTTA 720 Query 677 CAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAAT--AAGAA-TTGTGAT-ACGATG 732 ||| |||||||| |||||| | || ||||| || | |||| ||| | | || ||| Sbjct 721 CAACAGAGAGATTGAAACGTCTATGCCTTCCG-CATTTCCAAGATGTTG-G-TCAC-ATG 776 Query 733 GTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAACTTTTGTT-CATC 791 |||||||| ||||||||||||||| | |||||| ||| |||| || || | | |||| Sbjct 777 GTTCTATCAGTTGTTAGAGAAGAACACCTCTCAATATTACATTGGA-CTCGTACTACATC 835 Query 792 AAAGATGGATATTTGGATGACCAATAGA-ATTGA 824 ||||||||| || ||||| ||||||| | ||||| Sbjct 836 AAAGATGGAGATATGGATAACCAATA-ACATTGA 868 > Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 Length=1152 Score = 78.7 bits (42), Expect = 9e-14 Identities = 60/68 (88%), Gaps = 3/68 (4%) Strand=Plus/Plus Query 1044 TCCATATT-TTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTAAAAGCAAA- 1101 ||||| || || ||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 1086 TCCAT-TTATTTTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTAGATGCAAAA 1144 Query 1102 GAAAATAA 1109 || ||||| Sbjct 1145 GAGAATAA 1152 > Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 Length=708 Score = 58.4 bits (31), Expect = 1e-07 Identities = 36/38 (95%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 1050 TTTTG-TCAGTTATGTTCCAAGTTTGGTTCAAATCCAG 1086 ||||| ||| |||||||||||||||||||||||||||| Sbjct 668 TTTTGCTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 705 > Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 Length=1546 Score = 56.5 bits (30), Expect = 4e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1060 TATGTTCCAAGTTTGGTTCAAATCCAGCAA 1089 |||||||||||||||||||||||||||||| Sbjct 1458 TATGTTCCAAGTTTGGTTCAAATCCAGCAA 1487 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42163946202 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5