BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04930.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930830 jgi|Araly1|930830|scaffold_303287.1 1046 0.0
> Ahg930830 jgi|Araly1|930830|scaffold_303287.1
Length=904
Score = 1046 bits (566), Expect = 0.0
Identities = 755/844 (89%), Gaps = 21/844 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGTAACCACTTCTAGTAGTTGTTGTGGTCACTGGTACGTTTTTCAAGGAATCTGC 60
||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 25 ATGTTCGTAACCACTTCTAGTAGTTGTTGTGGTCACTGGTACGGTTTTCATGGAGTCTGC 84
Query 61 ATCGGCTGCAAATCAAAAGTGCACAAAAGCCAATTCCGAAAATTTGATTATATTTTCAAA 120
|||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 85 ATCGGCTGCAAATCAATAGTGCACAAAAGCCAATGGCGAGCATTTGATTATATTTTCAAC 144
Query 121 GGTTTACAGCTAAGCAACGAAGCTGTGGCATTAACCAAGTCCCTTACAACAAA-ACACTC 179
||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 145 GGTTTACAGCTAAGCCACGAAGCTGTGGCATTAACCAAGTCCCGCACAACAAATA-ACTC 203
Query 180 TTGTCTCAACGAGAAGAAACTCCACCTTGTCCTTGACTTAGACCACACACTTCTGCAC-T 238
||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| |
Sbjct 204 TTGTCTCAACGAGAAGAAACTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACAT 263
Query 239 CTAAACTAGTTTCAAA-TCTCTCCCAAGCAGAGAGGTATCTAATCCAAGAAGCGA-GTTC 296
||| || ||| | |||||||| |||||||| |||||||||||||||||| | ||||
Sbjct 264 GAAAA--AGGTTCCATGTCTCTCCCGAGCAGAGATGTATCTAATCCAAGAAGC-ATGTTC 320
Query 297 AAG-AACAAGGGAAGATCTATGGAAATTCAGAC-CCATAGGACATCCCATTGATCGCTTG 354
| | ||||||||||||| |||||||| | |||| || ||||| ||||||| |||||||||
Sbjct 321 A-GTAACAAGGGAAGATATATGGAAAATAAGACTCC-TAGGAGATCCCATAGATCGCTTG 378
Query 355 ATAAAGCTACGACCTTTTGTTCGTGACTTCTTGAAAGAAGCCAACGAGATGTTCACGATG 414
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 379 ATAAAGCTACGACCCTTTGTTCGCGACTTCTTGAAAGAAGCCAATGAGATGTTCACAATG 438
Query 415 TTTGTTTACACAATGGGTAGTCGCATATATGCTAAAGCCATCTTGGAGATGATTGATCCG 474
| ||||||||||| ||||| ||||| ||| |||||||| |||||||| ||||||||||
Sbjct 439 TATGTTTACACAAAGGGTACTCGCAAATACGCTAAAGCTGTCTTGGAGCTGATTGATCCT 498
Query 475 AAGAAACTCTATTTTGGTAATAGAGTGATTACAAAAGACGAGAGTCCTCGT-ATGAAAAC 533
|| | ||||||||||||| |||||||||||||||||||||||||||||| | | ||| ||
Sbjct 499 AATAGACTCTATTTTGGTGATAGAGTGATTACAAAAGACGAGAGTCCTCATCA-GAAGAC 557
Query 534 GCTTAATTTGGTTTTGGCTGAGGAGCGTGGAGTGGTGATTGTTGATGATACGCGTGATAT 593
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 558 GCTTGATTTGGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTTGATGATAGGCGTGATAT 617
Query 594 TTGGCCCCATCACAAGAATAACCTAATACAGATTCGCAAGTACAAGTATTTCAGACG-CA 652
||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| | ||
Sbjct 618 TTGGCCCCATCACAAGAGTAACCTAATAGAGATTAGCAAGTACAAGTATTTCAGA-GTCA 676
Query 653 GTGGCCTAGACTCAAATTCTTACTCTGAGAAGAAAACAGACGAGGGTGAAAATGACGGTG 712
|||||| || ||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 677 GTGGCCAAGGGTCAAATTCTTACTCTGAGAAGAAGACAGACGAGAGTGAAAAAGACGGTG 736
Query 713 GATTGGCGAATGTTTTAAAACTACTCAGAGAAGTTCACCGTAGATTCTTCATAGTCGAGG 772
|||||||||||||||||||| |||||| | |||||||| ||||||||||||| |||||||
Sbjct 737 GATTGGCGAATGTTTTAAAATTACTCAAACAAGTTCACTGTAGATTCTTCATGGTCGAGG 796
Query 773 TCGAGGAGGTGCTGGAGTCAATGGACGTCAGGTCGCTGCTAAAAGAAGGATATA--GACT 830
||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 797 ---AGGAGAAGCTGGAGTCAATGGACGTCAGGTCGCTGCTAAAAGAAATATATATAGACT 853
Query 831 TTGA 834
||||
Sbjct 854 TTGA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5