BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04940.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905845 jgi|Araly1|905845|Al_scaffold_0003_2973 1757 0.0
> Ahg905845 jgi|Araly1|905845|Al_scaffold_0003_2973
Length=1173
Score = 1757 bits (951), Expect = 0.0
Identities = 1107/1182 (94%), Gaps = 12/1182 (1%)
Strand=Plus/Plus
Query 135 ATGATCTACCTCTCTAGACGCTCACTCTCTTCTCTTCTCCGATCCGGTTTCAATCTCCGC 194
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTCTGCCTCTCTAGACGCTCACTCTCTTCTCTTCTCCGATCCGGTTTCAATCTCCGC 60
Query 195 GGCGATCTTACAGCAGCAGCTGTCTCTTGTTCCTCT-CTCTTCTCCGACGCGGACGGTGG 253
||||||||| | || |||||| |||| ||||||||| | ||||| ||| | |||||| |
Sbjct 61 GGCGATCTTGCTGCGGCAGCTCTCTCCTGTTCCTCTAC-CTTCTTTGACTCAGACGGTAG 119
Query 254 GATTAAGAAGTTACACTCGCGAGCTGGGAATGCAGTGTTATGGAGAAATAGT-CAGCTAT 312
||||||||| || || || |||||||| |||||| | ||||||||||||||| || |||
Sbjct 120 GATTAAGAATTTCCATTCTCGAGCTGGAAATGCAATCTTATGGAGAAATAGTCCA-TTAT 178
Query 313 GTAGTTCTCAAGGAAGCTTTTTTGGACGAGGAGGACAAGTCTCAGGTTCTGTGTTTCGAT 372
||||| ||||||||||||||||||||||| || |||||||||| |||| ||||||||||
Sbjct 179 GTAGTCCTCAAGGAAGCTTTTTTGGACGA-GA--ACAAGTCTCAAGTTCCGTGTTTCGAT 235
Query 373 GTTTCTGCAGTGGTAGTGATACTTCTCCTCCTAGCTTGGATCGGAAGTTTTTGGCTCAGC 432
||||||||||||| |||||||| | | |||||||||||||| ||||||||||||||||||
Sbjct 236 GTTTCTGCAGTGGCAGTGATAC-T-T-CTCCTAGCTTGGATAGGAAGTTTTTGGCTCAGC 292
Query 433 TATGGGTTGCAGATAAGAAAAAGCTAAAGGCTATGGAAAAGCGATATAAGAAAGCTTCTA 492
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 293 TATGGGTTGCAGATAAGAAAAAGCTTAAGGCTATGGAAAAGCGATATCGGAAAGCTTATA 352
Query 493 AGCATAGGAACTACACTGAAAATGATGGATTTGATGTCCATTTTGAAACTGTTGAGCCTA 552
|||||||||||||||||| ||||||||||| ||||||||| ||| | ||||||||||
Sbjct 353 AGCATAGGAACTACACTGTGAATGATGGATTCGATGTCCATAGTGAGATTGTTGAGCCTG 412
Query 553 CAGTGGAGCAACCACCGGTTAGCCAGTCTATGTCTGGTCTTCTGAAGCCTAAAACTTCTG 612
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAGTGCATCAACCACCGGTTAGCCAGTCTATGTCTGGTCTTCTGAAGCCTAAAACTTCTA 472
Query 613 ATGAGGCCAAAATTGCAACTCTGCTTGCACGATCGAATTTGCTGGTTACAAGAGATATTG 672
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 473 ATGAGGCCAAAATTGCAACTCTGCTTGCACGATCGAATTTGCTGATTACAAGAGACATTG 532
Query 673 AATGGGCAAATCTGGTTCTTGGTTTTGAACAGGAAAATCGCTATATTGTAGTAGATGTTT 732
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 533 AATGGGCAAATCTGGTTCTTGGTTTTGAACAGGAAAATCGCTATATTGTAGTTGATGTTT 592
Query 733 GCTATCCTGAGGCACCTGTGGGGTCTATCCGAGAACAAAGCAATTTACTGGCGCGGCAGC 792
|||||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 593 GCTATCCTCAGGCACCTGTGGGGTCTATCCGGGAACAAAGCAATTTAATTGCGCGGCAGC 652
Query 793 TGCTTCGTACCCGGCGCCCATTTGTTGCTTCCATAACTGATGCTTTGGGTAATGAGCTTT 852
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGCTTCGTACTCGGCGCCCGTTTGTTGCTTCCATAACTGATGCTTTGGGTAATGAGCTTT 712
Query 853 TCCGGGTTCGTC-GACCTTTCTGGTGGCTCACAAGTTCAATATATGCTGAAATTGATGGA 911
|||||||||| | |||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 713 TCCGGGTTCG-CAGACCTTTCTGGTGGATCTCAAGTTCAATATATGCTGAGATTGATGGA 771
Query 912 GAGGAAATTGGTGTTGTTCATCGACGATGGCATCTATGGAGAAGAATTTATGATTTATAC 971
||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 772 GAGGAAATTGGCGTTGTTCACCAACGATGGCATCTATGGAGAAGAATTTATGATTTATAC 831
Query 972 CTGGGGAACAACCAGTTTGCAGTGGTAGAAAATCCTGGGTTTTGGAATTGGACATTTACA 1031
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTTGGGAACAACCAGTTTGCAGTGGTAGAAAATCCTGGGTTTTGGAATTGGACATTTACA 891
Query 1032 GTGAAGGATGCTGATGGGGAAGTCTTAGCCCAAATAGATCGTGATTGGAGAGGTTTTGGC 1091
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 892 GTGAAGGATGCTGATGGGGAAGTATTAGCCCAAATAGATCGTGATTGGAGGGGTTTTGGC 951
Query 1092 TTTGAGATATTCACAGATGCTGGGCAGTACGTGATCCGATTTGGAAAAGCTGATGCTGCA 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTTGAGATATTCACAGATGCTGGGCAGTACGTGATCCGATTTGGAAAAGCTGATGCTGCA 1011
Query 1152 GCCAAGACCGGCCCTGCGACACTGGTAGAAGAGTTAGAAGTGAAACGGCCATTGACTTTG 1211
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1012 GCCAAAACCGGCCCTGCGACAATGATAGAAGAGTTAGAAGTGAAACGGCCATTGACTTTG 1071
Query 1212 TCAGAAAGAGCTGTTGTCCTTACGCTTGCGATTTCACTAGATAATGATTACTTTTCAAGA 1271
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1072 TCAGAAAGAGCTGTTGTCCTTACGCTTGCTATTTCACTAGATAATGATTACTTTTCAAGA 1131
Query 1272 CATGGTGGCTGGGGAATCCCATTCATGGCGGTGGGTGAGTAG 1313
||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1132 CATGGTGGCTGGGGAATACCATTCATGGCGGTGGGTGAGTAG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5