BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G05060.1 Length=948 Score E Sequences producing significant alignments: (Bits) Value Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1 1175 0.0 Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 316 1e-85 Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 315 5e-85 > Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1 Length=924 Score = 1175 bits (636), Expect = 0.0 Identities = 854/954 (90%), Gaps = 36/954 (4%) Strand=Plus/Plus Query 1 ATGAGAATTGATCTTTCTGTTCCAAAGGTGGGGGCAGAGTTAGAACTCAACAAGGTTCTC 60 |||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1 ATGAGAATTGATCTGTCTGTTCCAAAGTTGAGGGCAGAGTTAGAACTCAACAAGGTTCTC 60 Query 61 GGAAAAGGTTCGTCTGGTTCGGTGAGTCTCATCAAGTACAA-GAGTCGACTCGACGGCCA 119 |||||||||||||| |||||||||||||||||||||||||| | | || | ||||||| | Sbjct 61 GGAAAAGGTTCGTCCGGTTCGGTGAGTCTCATCAAGTACAATG-GACGCCGCGACGGCGA 119 Query 120 AACACTTTACGCCGCGGTGAAAACCTCCAACATAATTCACGCCGACTCTCTCCT-CAAAG 178 ||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || ||||| Sbjct 120 AACGCTTTACGCCGCCGTGAAAACCTCCAACATCATTCACGCTGACACTCT-CTACAAAG 178 Query 179 AGTTTCAGATCTTGTCCGAATTCAAAGGCTGTTCGAGAATCGTCCAATGCTATGGGACAA 238 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 179 AGTTTCAGATCTTGTCCGAATTCAAAGGATGTTCAAGAATCGTCCAATGCTATGGGACCA 238 Query 239 AAGTACAAGAGACAATCAACGAAGAAGGTGACGTAGAGTTCACGATTCCCATGGAATATG 298 ||||| |||||| ||||| ||| || |||||||||||||||| ||||| |||||| || | Sbjct 239 AAGTAGAAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATTCACATGGAGTACG 298 Query 299 CATCTGGAGGAAGCTTGAGACATTTTATGAGTAGATTCAAGGACATGAAATTGCCTGATG 358 |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 299 CATCTGGAGGAAGCTTGAGAAATTTTATGAGCAGATTCAAGGAAATGAAATTGCCTGATC 358 Query 359 CTTTGATCAGAAGGTTTACGCGTATGATCCTCGAGGGTTTAGCAGTTATTCATGGACACG 418 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 359 CTTTGATCAGAAGGTTTACGCGTATGATTCTTGAGGGTTTAGCAGTTATTCATGGACACG 418 Query 419 GTTATGTTCACTGCGATCTAAAACCCGAAAACATCCTTGTTTTCCCGAGTTTCGAGTTAA 478 | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 419 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCCGAGTTTCGAGTTAA 478 Query 479 AGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCTTCCTAGTC 538 |||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||| Sbjct 479 AGATTTCTGATTTCGGGTTGTCCAAAAGAGAGGGAGATAACAACTGGTGGCTTCCTAGTC 538 Query 539 ATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAAC-GGCGAAACA 597 |||| ||||||||||||||| ||||||||||||| ||||| |||||| || ||||| ||| Sbjct 539 ATCCTTTTGCGGGAACACCGATATATATGTCGCCGGAATCCATTTCT-ACGGGCGAGACA 597 Query 598 AGGAGAGGTTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAAAG 657 ||||||||||||| | | || ||| || ||| || | | | | Sbjct 598 AGGAGAGGTTTGG----A---T--TT---ATG-GT--CGTT--AG--G---A-T-G---T 630 Query 658 AGACCATGGTGGGATAAGAACTATGACTTGGGAGATCTTAAGAAAGGTTCCATGCCATTG 717 ||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||| Sbjct 631 AGACCATGGTGGGATAAAAACTATGACTTGGAAGATCTCAAGAAAGGTTACATGCCATTG 690 Query 718 ATTTCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCTTCGCGTCGGAG 777 ||| ||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||| Sbjct 691 ATTCCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGAGTTGTTTTGCGGCGGAG 750 Query 778 ACTAACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTGCGTGGGGATGTT 837 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 751 ACTGACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTGCGTGGAGATGTT 810 Query 838 AATAAGATCATAGAGCCTCTCGTGAAGA-GTA--AGAATTCTAATGATATAGCACTAGAG 894 ||||||||||||||||||||||||| || | | |||||||||||||||||||||||||| Sbjct 811 AATAAGATCATAGAGCCTCTCGTGATGAAGAATGAGAATTCTAATGATATAGCACTAGAG 870 Query 895 TTGGAGAATATTGAACACAGGCTTTCGCAACTTAGGTGTATTAGTGGTGGATAG 948 |||||||| ||||| | |||| ||||||||||||||||||||||||||| |||| Sbjct 871 TTGGAGAAAATTGAGCTCAGGTTTTCGCAACTTAGGTGTATTAGTGGTGAATAG 924 > Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 Length=1152 Score = 316 bits (171), Expect = 1e-85 Identities = 328/403 (81%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 478 AAGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCTTCCT-AG 536 |||||||||||||| |||||| | |||||||| ||||| | ||| ||||||| |||| | Sbjct 481 AAGATTTCTGATTTTGGGTTGACCAAAAGAGATGGAGACAATAAGTGGTGGCATCCTCA- 539 Query 537 TCATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAACGGCGAAAC 596 || ||||| | |||||| || | ||||||||||| | |||| ||||| | ||||| || Sbjct 540 TCGCCCGTTCGTGGGAACTGCGATCTATATGTCGCCGGGATCGGTTTCTCATGGCGAGAC 599 Query 597 AAGGAGAGG-TTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAA 655 | ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 600 AGGGAGAGGACTT-GATTTATGGTCATTGGGATGTGTGGTGTTGGAGATGTACACTGGAA 658 Query 656 AGAGACCATGGTGGGATAAGAACTATGACTTGG-GAGATCTTAAGAAA-GGTTC-CATGC 712 ||| |||||||||| |||| ||||||||||||| ||| ||| ||||| ||| | | || Sbjct 659 AGAAACCATGGTGGCATAATAACTATGACTTGGAGAG-TCTCAAGAAGTGGTACGC--GC 715 Query 713 CATTGATTTCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCTTCGCGT 772 || ||||| ||| ||| ||||||| ||||| |||| |||| | ||| |||||||| ||| Sbjct 716 CACTGATTCCGAGTGATCTTCCTTGCGATGCTAAACACTTTATCATGGCTTGCTTCACGT 775 Query 773 CGGAGACTAACAAGAGAAAAAACGCTTTCACATTGTTG-AGGCATTGCTTCTTGCGTGGG 831 | ||| | |||||||| |||| || ||||||||| || || ||||||||||||| Sbjct 776 TAAATACTCATGAGAGAAAAGACGCGTTGACATTGTTGGAGT-ATAGCTTCTTGCGTGGA 834 Query 832 GATGTTAATAAGATCATAGAGCCTC-TCGTGAAGAGTAAGAAT 873 || ||||||||||||| | |||||| | ||||||| | ||||| Sbjct 835 GAGGTTAATAAGATCACAAAGCCTCAT-GTGAAGAATGAGAAT 876 > Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 Length=1030 Score = 315 bits (170), Expect = 5e-85 Identities = 313/382 (82%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 471 CGAGTTAAAGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCT 530 ||| || ||| ||||||||||||||||||| |||||||| ||||| | ||| ||||||| Sbjct 520 CGAATTGAAGTTTTCTGATTTCGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCA 579 Query 531 TCCTAGTCATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAACGG 590 |||| |||| |||||||||||||||||| | ||||||||||| || ||||| ||| |||| Sbjct 580 TCCTCGTCAACCGTTTGCGGGAACACCGATCTATATGTCGCCGGAGTCGATCTCTCACGG 639 Query 591 CGAAACAAGGAGAGG-TTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACA 649 || | | ||| ||| || ||||||||||| || |||||||| || ||||||||||||| Sbjct 640 TGAGATAGGGAAAGGACTT-GATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTACA 698 Query 650 CTGGAAAGAGACCATGGTGGGATAAGAACTATGACTTGGGAGATCTTAAGAAAG-GTTCC 708 |||||||||||||||||||| |||| ||||||||||| | |||||| | ||| | ||| | Sbjct 699 CTGGAAAGAGACCATGGTGGCATAATAACTATGACTTAGAAGATCTCATGAA-GTGTTAC 757 Query 709 -ATGCCATTGATTTCGAAA-GATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCT 766 | ||||||| |||| ||| || |||| ||||||||||||||| | ||||| |||| Sbjct 758 GA-GCCATTG-TTTCCCCGTGATCTTTCTTGCGATGCAAAACTCTTTCTCATGACCTGCT 815 Query 767 TCGCG-TCGGAGACTAACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTG 825 | ||| | | || || | |||||||| |||| || |||||||||||||| |||||||| Sbjct 816 TTGCGGTTG-AGCCTGATGAGAGAAAAGACGCATTGACATTGTTGAGGCAAAGCTTCTTG 874 Query 826 CGTGGGGATGTTAATAAGATCA 847 ||||| |||| |||||| ||| Sbjct 875 CGTGGAGATGACAATAAGTTCA 896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35187452391 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5