BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05060.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1 1175 0.0
Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333 316 1e-85
Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1 315 5e-85
> Ahg480128 jgi|Araly1|480128|fgenesh2_kg.3__2829__AT2G05060.1
Length=924
Score = 1175 bits (636), Expect = 0.0
Identities = 854/954 (90%), Gaps = 36/954 (4%)
Strand=Plus/Plus
Query 1 ATGAGAATTGATCTTTCTGTTCCAAAGGTGGGGGCAGAGTTAGAACTCAACAAGGTTCTC 60
|||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 ATGAGAATTGATCTGTCTGTTCCAAAGTTGAGGGCAGAGTTAGAACTCAACAAGGTTCTC 60
Query 61 GGAAAAGGTTCGTCTGGTTCGGTGAGTCTCATCAAGTACAA-GAGTCGACTCGACGGCCA 119
|||||||||||||| |||||||||||||||||||||||||| | | || | ||||||| |
Sbjct 61 GGAAAAGGTTCGTCCGGTTCGGTGAGTCTCATCAAGTACAATG-GACGCCGCGACGGCGA 119
Query 120 AACACTTTACGCCGCGGTGAAAACCTCCAACATAATTCACGCCGACTCTCTCCT-CAAAG 178
||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || |||||
Sbjct 120 AACGCTTTACGCCGCCGTGAAAACCTCCAACATCATTCACGCTGACACTCT-CTACAAAG 178
Query 179 AGTTTCAGATCTTGTCCGAATTCAAAGGCTGTTCGAGAATCGTCCAATGCTATGGGACAA 238
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 179 AGTTTCAGATCTTGTCCGAATTCAAAGGATGTTCAAGAATCGTCCAATGCTATGGGACCA 238
Query 239 AAGTACAAGAGACAATCAACGAAGAAGGTGACGTAGAGTTCACGATTCCCATGGAATATG 298
||||| |||||| ||||| ||| || |||||||||||||||| ||||| |||||| || |
Sbjct 239 AAGTAGAAGAGAGAATCACCGACGACGGTGACGTAGAGTTCAAGATTCACATGGAGTACG 298
Query 299 CATCTGGAGGAAGCTTGAGACATTTTATGAGTAGATTCAAGGACATGAAATTGCCTGATG 358
|||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 299 CATCTGGAGGAAGCTTGAGAAATTTTATGAGCAGATTCAAGGAAATGAAATTGCCTGATC 358
Query 359 CTTTGATCAGAAGGTTTACGCGTATGATCCTCGAGGGTTTAGCAGTTATTCATGGACACG 418
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 359 CTTTGATCAGAAGGTTTACGCGTATGATTCTTGAGGGTTTAGCAGTTATTCATGGACACG 418
Query 419 GTTATGTTCACTGCGATCTAAAACCCGAAAACATCCTTGTTTTCCCGAGTTTCGAGTTAA 478
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 GCTATGTTCACTGCGATCTCAAACCCGAAAACATCCTCGTTTTCCCGAGTTTCGAGTTAA 478
Query 479 AGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCTTCCTAGTC 538
|||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||
Sbjct 479 AGATTTCTGATTTCGGGTTGTCCAAAAGAGAGGGAGATAACAACTGGTGGCTTCCTAGTC 538
Query 539 ATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAAC-GGCGAAACA 597
|||| ||||||||||||||| ||||||||||||| ||||| |||||| || ||||| |||
Sbjct 539 ATCCTTTTGCGGGAACACCGATATATATGTCGCCGGAATCCATTTCT-ACGGGCGAGACA 597
Query 598 AGGAGAGGTTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAAAG 657
||||||||||||| | | || ||| || ||| || | | | |
Sbjct 598 AGGAGAGGTTTGG----A---T--TT---ATG-GT--CGTT--AG--G---A-T-G---T 630
Query 658 AGACCATGGTGGGATAAGAACTATGACTTGGGAGATCTTAAGAAAGGTTCCATGCCATTG 717
||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||
Sbjct 631 AGACCATGGTGGGATAAAAACTATGACTTGGAAGATCTCAAGAAAGGTTACATGCCATTG 690
Query 718 ATTTCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCTTCGCGTCGGAG 777
||| ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 691 ATTCCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGAGTTGTTTTGCGGCGGAG 750
Query 778 ACTAACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTGCGTGGGGATGTT 837
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 751 ACTGACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTGCGTGGAGATGTT 810
Query 838 AATAAGATCATAGAGCCTCTCGTGAAGA-GTA--AGAATTCTAATGATATAGCACTAGAG 894
||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 811 AATAAGATCATAGAGCCTCTCGTGATGAAGAATGAGAATTCTAATGATATAGCACTAGAG 870
Query 895 TTGGAGAATATTGAACACAGGCTTTCGCAACTTAGGTGTATTAGTGGTGGATAG 948
|||||||| ||||| | |||| ||||||||||||||||||||||||||| ||||
Sbjct 871 TTGGAGAAAATTGAGCTCAGGTTTTCGCAACTTAGGTGTATTAGTGGTGAATAG 924
> Ahg345991 jgi|Araly1|345991|fgenesh1_pg.C_scaffold_4002333
Length=1152
Score = 316 bits (171), Expect = 1e-85
Identities = 328/403 (81%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 478 AAGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCTTCCT-AG 536
|||||||||||||| |||||| | |||||||| ||||| | ||| ||||||| |||| |
Sbjct 481 AAGATTTCTGATTTTGGGTTGACCAAAAGAGATGGAGACAATAAGTGGTGGCATCCTCA- 539
Query 537 TCATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAACGGCGAAAC 596
|| ||||| | |||||| || | ||||||||||| | |||| ||||| | ||||| ||
Sbjct 540 TCGCCCGTTCGTGGGAACTGCGATCTATATGTCGCCGGGATCGGTTTCTCATGGCGAGAC 599
Query 597 AAGGAGAGG-TTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACACTGGAA 655
| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 AGGGAGAGGACTT-GATTTATGGTCATTGGGATGTGTGGTGTTGGAGATGTACACTGGAA 658
Query 656 AGAGACCATGGTGGGATAAGAACTATGACTTGG-GAGATCTTAAGAAA-GGTTC-CATGC 712
||| |||||||||| |||| ||||||||||||| ||| ||| ||||| ||| | | ||
Sbjct 659 AGAAACCATGGTGGCATAATAACTATGACTTGGAGAG-TCTCAAGAAGTGGTACGC--GC 715
Query 713 CATTGATTTCGAAAGATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCTTCGCGT 772
|| ||||| ||| ||| ||||||| ||||| |||| |||| | ||| |||||||| |||
Sbjct 716 CACTGATTCCGAGTGATCTTCCTTGCGATGCTAAACACTTTATCATGGCTTGCTTCACGT 775
Query 773 CGGAGACTAACAAGAGAAAAAACGCTTTCACATTGTTG-AGGCATTGCTTCTTGCGTGGG 831
| ||| | |||||||| |||| || ||||||||| || || |||||||||||||
Sbjct 776 TAAATACTCATGAGAGAAAAGACGCGTTGACATTGTTGGAGT-ATAGCTTCTTGCGTGGA 834
Query 832 GATGTTAATAAGATCATAGAGCCTC-TCGTGAAGAGTAAGAAT 873
|| ||||||||||||| | |||||| | ||||||| | |||||
Sbjct 835 GAGGTTAATAAGATCACAAAGCCTCAT-GTGAAGAATGAGAAT 876
> Ahg483276 jgi|Araly1|483276|fgenesh2_kg.4__2336__AT2G41920.1
Length=1030
Score = 315 bits (170), Expect = 5e-85
Identities = 313/382 (82%), Gaps = 10/382 (3%)
Strand=Plus/Plus
Query 471 CGAGTTAAAGATTTCTGATTTCGGGTTGTCTAAAAGAGAAGGAGATAGTAAATGGTGGCT 530
||| || ||| ||||||||||||||||||| |||||||| ||||| | ||| |||||||
Sbjct 520 CGAATTGAAGTTTTCTGATTTCGGGTTGTCGAAAAGAGATGGAGACACTAAGTGGTGGCA 579
Query 531 TCCTAGTCATCCGTTTGCGGGAACACCGGTATATATGTCGCCTGAATCGATTTCTAACGG 590
|||| |||| |||||||||||||||||| | ||||||||||| || ||||| ||| ||||
Sbjct 580 TCCTCGTCAACCGTTTGCGGGAACACCGATCTATATGTCGCCGGAGTCGATCTCTCACGG 639
Query 591 CGAAACAAGGAGAGG-TTTGGATTTATGGTCATTAGGATGTGTGGTGTTGGAGATGTACA 649
|| | | ||| ||| || ||||||||||| || |||||||| || |||||||||||||
Sbjct 640 TGAGATAGGGAAAGGACTT-GATTTATGGTCGTTGGGATGTGTCGTATTGGAGATGTACA 698
Query 650 CTGGAAAGAGACCATGGTGGGATAAGAACTATGACTTGGGAGATCTTAAGAAAG-GTTCC 708
|||||||||||||||||||| |||| ||||||||||| | |||||| | ||| | ||| |
Sbjct 699 CTGGAAAGAGACCATGGTGGCATAATAACTATGACTTAGAAGATCTCATGAA-GTGTTAC 757
Query 709 -ATGCCATTGATTTCGAAA-GATATTCCTTGTGATGCAAAACTCTTTGTGATGACTTGCT 766
| ||||||| |||| ||| || |||| ||||||||||||||| | ||||| ||||
Sbjct 758 GA-GCCATTG-TTTCCCCGTGATCTTTCTTGCGATGCAAAACTCTTTCTCATGACCTGCT 815
Query 767 TCGCG-TCGGAGACTAACAAGAGAAAAAACGCTTTCACATTGTTGAGGCATTGCTTCTTG 825
| ||| | | || || | |||||||| |||| || |||||||||||||| ||||||||
Sbjct 816 TTGCGGTTG-AGCCTGATGAGAGAAAAGACGCATTGACATTGTTGAGGCAAAGCTTCTTG 874
Query 826 CGTGGGGATGTTAATAAGATCA 847
||||| |||| |||||| |||
Sbjct 875 CGTGGAGATGACAATAAGTTCA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5