BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G05110.1

Length=5192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949037 jgi|Araly1|949037|scaffold_800924.1                        115    3e-24


> Ahg949037 jgi|Araly1|949037|scaffold_800924.1
Length=501

 Score =  115 bits (62),  Expect = 3e-24
 Identities = 79/87 (91%), Gaps = 2/87 (2%)
 Strand=Plus/Plus

Query  1035  TCCAACT-ACCCCAACAAACAACGGTGATGGTACGGTGGGCAATAAGCCACCGGAGCCGC  1093
             ||| ||| ||||||||   ||| |||||||||||||||||| ||||||||||||||||||
Sbjct  416   TCCGACTAACCCCAAC-CCCAAAGGTGATGGTACGGTGGGCCATAAGCCACCGGAGCCGC  474

Query  1094  AATGAATACATCCTTTTGGAACTGCCG  1120
             |||||||||| ||||||||||||||||
Sbjct  475   AATGAATACAGCCTTTTGGAACTGCCG  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 196567364545


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5