BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G05110.1 Length=5192 Score E Sequences producing significant alignments: (Bits) Value Ahg949037 jgi|Araly1|949037|scaffold_800924.1 115 3e-24 > Ahg949037 jgi|Araly1|949037|scaffold_800924.1 Length=501 Score = 115 bits (62), Expect = 3e-24 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 1035 TCCAACT-ACCCCAACAAACAACGGTGATGGTACGGTGGGCAATAAGCCACCGGAGCCGC 1093 ||| ||| |||||||| ||| |||||||||||||||||| |||||||||||||||||| Sbjct 416 TCCGACTAACCCCAAC-CCCAAAGGTGATGGTACGGTGGGCCATAAGCCACCGGAGCCGC 474 Query 1094 AATGAATACATCCTTTTGGAACTGCCG 1120 |||||||||| |||||||||||||||| Sbjct 475 AATGAATACAGCCTTTTGGAACTGCCG 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 196567364545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5