BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05115.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917013 jgi|Araly1|917013|Al_scaffold_0008_1764 590 1e-167
Ahg949967 jgi|Araly1|949967|scaffold_801854.1 206 5e-52
> Ahg917013 jgi|Araly1|917013|Al_scaffold_0008_1764
Length=699
Score = 590 bits (319), Expect = 1e-167
Identities = 521/616 (85%), Gaps = 23/616 (4%)
Strand=Plus/Plus
Query 229 GAGTCATCGATACACAAAGTACGGTTAAGTT-TT-TAC-CGTCAAGATAGA-TGTGATAT 284
||||||| ||||| |||| | ||||||| || || | | | ||| | |||| | |||| |
Sbjct 10 GAGTCATGGATACGCAAACTCCGGTTAAATTATTGTTCTCCTCATGGTAGACT-TGATCT 68
Query 285 CTCGTCATGGATTAATGTTGCGGCTAGGCGTAGGATTCAGCATCTTGATGTT-GAATATT 343
||||||||||||| ||| || | ||| ||||||||||||||||||||||||| | | ||
Sbjct 69 CTCGTCATGGATTGATGCTGTGACTACGCGTAGGATTCAGCATCTTGATGTTCG-TTTTT 127
Query 344 TTTGATGTGGTGAGATACCCTCGTGTTTATAAACCTTTGAGACACTGGTACACTTATGAC 403
|||| || |||||||||| || ||||||| |||| ||||||||||||||||||| |||
Sbjct 128 TTTGCGGTAATGAGATACCCCCGAGTTTATATACCTGTGAGACACTGGTACACTTACGAC 187
Query 404 TCTGTGAGGTCACCTTGTGTAATGCTGACTTTGTTTCCTTACCTTGTCTAAAGATCATGC 463
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 188 TCTGTGAGGTCACCTTGTGTAATGCTGACTTTGTTTCCTTGCCTTGTCTGAAGATCATGC 247
Query 464 ATTTACGA-TATATTAGATACCCCAACAAGACCACGTTGCAGAAACTTATCTCAGGCTCT 522
|| ||| | ||| || ||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 248 ATCTAC-AGCATAATAAATATCCCAATGAGACTACGTTGCAGAAACTTATCTCAGGCTCT 306
Query 523 CCACTTCTGAAAGATTTAACCATCCT-CAGATCTTCGAATG---ATGATAAGACAAATGT 578
||| ||||| |||||||||||||| | |||||||| ||||| |||||||| | |||||
Sbjct 307 CCAGTTCTGGAAGATTTAACCATC-TACAGATCTTGGAATGGTGATGATAAGGCGAATGT 365
Query 579 TTTACAAGTGCGCTCTCGTACTCTAAAGAGAGTCTACATCGATGAGT-CTA---AAGTTG 634
||||| ||||||||||| ||| |||||||||||||| || ||||| | | ||||||
Sbjct 366 TTTACTAGTGCGCTCTCATACGCTAAAGAGAGTCTATATAAATGAGGGC-ACCCAAGTTG 424
Query 635 TGATTTATGCACCTCTACTCCAGTGTTTGAGGGCTAATGTCTCTTTACCAAAGAACTTTC 694
||||| ||||||||||||||||||||||||| |||| || || | | ||||||||||||
Sbjct 425 TGATTGATGCACCTCTACTCCAGTGTTTGAGCGCTACGGTTTCCTCAACAAAGAACTTTC 484
Query 695 AGATCATCAAT-TTGGGTTCCTCTGCCAAACTAGATATTGGTTTCTA-TAATAGCCATGC 752
||||||||||| |||| |||||||||||||||||||||||||||| || | ||||| |
Sbjct 485 AGATCATCAATGTTGG-TTCCTCTGCCAAACTAGATATTGGTTTCCCCTATT-GCCATAC 542
Query 753 GACATACAATAACACGATTCCTGACATTCTCAGCGACATATCCAGGGTTAAGGAGCTAGT 812
|||||||| || || ||||||||||||||| | ||| ||||| ||||| | |||||| ||
Sbjct 543 GACATACAGTAGCATGATTCCTGACATTCTGACCGATATATCGAGGGTCAGGGAGCTGGT 602
Query 813 TATTAGTAATGATATT 828
||||| ||||| ||||
Sbjct 603 TATTAATAATGCTATT 618
> Ahg949967 jgi|Araly1|949967|scaffold_801854.1
Length=460
Score = 206 bits (111), Expect = 5e-52
Identities = 358/470 (76%), Gaps = 45/470 (10%)
Strand=Plus/Plus
Query 449 GTCTAAAGATCATGCATTTACG-ATATATTAGATAC-CCCAACAAGACCACGTTGCAGAA 506
|||| ||||||||||||||| | | || ||| | | ||||| |||| |||||||||||
Sbjct 14 GTCTGAAGATCATGCATTTA-GAAAATGTTA-CTTCTCCCAATGAGACTACGTTGCAGAA 71
Query 507 ACTTATCTCAGGCTCTCCACTTCTGAAAGATTTAAC-CATCCTCAGATCTTCGAATGATG 565
||||||||||||||||||| ||||| ||||||||| | | | |||| |||| || | |
Sbjct 72 ACTTATCTCAGGCTCTCCAGTTCTGGAAGATTTAAAACTTA-TAAGATGTTCGTATCA-G 129
Query 566 ATAAGACAAATGTTTTACAAGTGCGCTCTCGTACTCTAAAGAGAGTCTACATCGATGAGT 625
| | | ||| | |||||| ||||||| ||| ||||||||| || |||| ||||||
Sbjct 130 A-AGG-CAA-T-----ACAAGTTCGCTCTCATACGCTAAAGAGAATCGACATTGATGAGA 181
Query 626 ---CTAAAGTTGTGATTTATGCACCTCTACTCCAGTGTTTGAGGGCT-A-ATGTCTCTTT 680
|||||||||||||| |||||||| ||||||||||| || | || | |||| ||||
Sbjct 182 GAACTAAAGTTGTGATTGATGCACCTTTACTCCAGTGTCTGTTGACTGAGATGT-TCTTA 240
Query 681 ACCAAAGAACTTTCAGATCATCAATTTGGGTT-CCTCTGCCAAACTAGATATTGGTTT-C 738
|| ||| |||| ||||||| |||||| |||| || |||||||||||||||||| | | |
Sbjct 241 ACAAAA-AACTATCAGATCGTCAATTCAGGTTTCC-CTGCCAAACTAGATATTGATATGC 298
Query 739 TAT-AATAGC-CATGCGAC---ATAC--AAT-AACACG--ATTCCTGACATTCTCAGCGA 788
|| ||| || | | | || | || ||| || || |||| || || |||| |||
Sbjct 299 GATCAAT-GCACCT-CTACCCCAGACCCAATGAAGGCGTGATTCGGGATATCCTCACCGA 356
Query 789 CATATCCAGGGTTAAGGAGCTAGTTATTAGTAATGA-TATTTGGAAGGTATACACCTCAA 847
|| || ||||| | ||| ||||||||||||| || || |||||||||||||| |||||
Sbjct 357 TATTTCGAGGGTCAGGGATCTAGTTATTAGTAG-GAATACTTGGAAGGTATACATCTCAA 415
Query 848 -ATTTTGTGCTGATATGTATATATATGAATATTGTTTTACAAAAGTTTCT 896
|||| | || |||| ||| |||| | |||| | ||||||||||||
Sbjct 416 CATTT-GAGC--ATATTTATTTATAAG--TATTCCTCCACAAAAGTTTCT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5