BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05160.1
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480130 jgi|Araly1|480130|fgenesh2_kg.3__2831__AT2G05160.1 1550 0.0
Ahg485672 jgi|Araly1|485672|fgenesh2_kg.5__1664__AT3G52980.1 649 0.0
> Ahg480130 jgi|Araly1|480130|fgenesh2_kg.3__2831__AT2G05160.1
Length=2034
Score = 1550 bits (839), Expect = 0.0
Identities = 969/1032 (94%), Gaps = 7/1032 (1%)
Strand=Plus/Plus
Query 358 ATGAATTTCACAGAATCAATGAACGTTGTGCACGCCAGAATCCAACAACTTGAACCAGAG 417
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGAATTTCACTGAATCAATGAACGTTGTGCACAACAGAATCCAACAACTTGAACCAGAG 60
Query 418 AATGCAGCAAAGATCTTTGGTTATCTCTTGTTGATGCAAGAAAATGGCAACCGCGACATG 477
|||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 AATGCATCAAAGATCATTGGTTATCTCTTGTTGATGCAAGACAATGGCAATCGCGACATG 120
Query 478 ATCCGTCTCGCGTTCTGTCCTGATTCTGTTATGTGTTCTGTCATCAATTGCGTTAAATAC 537
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 121 ATCCGTCTCGCGTTCTGTCCTGATTCTGTGATGCGTTCTGTCATCAATTGCGTTAAATAC 180
Query 538 GAGTTAGCTAGGAATTCTCATCATTACCACAGCCCTCCTTCTGATCACATTCCTACTCCC 597
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GAGTTAGCTAAGAATGCTCATCATTACCACAGCCCTCCTTCTGATCACATTCCTAGTCAT 240
Query 598 AAATTTGGATCATTCACCGGTTCATCGCCTCTTTCGGTTTCGGTTTCTCCTCCCATGAAA 657
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 241 AAATTTGGATCATTCACGGGTTCATCGCCTCTTTCGGTTTCTGTTTCTCCTCCCGTGAAA 300
Query 658 ACCGGTTTTTGGGAGAATTCAACCGAGATGGATACCTTGCAGAACAATCTTCAGTTCTTG 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGGTTTCTGGGAGAATTCAACCGAGATGGATACCTTGCAGAACAATCTTCAGTTCTTG 360
Query 718 AATTTTGAGGATCCTTTGACCAGCCCTGAATTCTCTAACGGGTTCTTCTCTCAAGAACGT 777
|||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 AATTTTGAGGATTCATTGACCAGCCCTGAATTCTCTAACGGTTTCTTCTCTCAAGACCGT 420
Query 778 CAATGTTTGCCTTTGCGAACTAGCCGAAGATCCCCGAGTTTACCCGAGTTCCCGGTAAAA 837
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||
Sbjct 421 CAATGTTTGCCTTTGCGAACGAGCAGGAGATCCCCGAGTTTACCCGAGTTCCCGGTCAAA 480
Query 838 ATCTGCCATTACTTCAACAAAGGGTTCTGCAAACACGGCAACAACTGTAGGTACTTCCAC 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTGTCATTACTTCAACAAAGGGTTCTGCAAACACGGCAACAACTGTAGGTACTTCCAC 540
Query 898 GGGCAGATTATACCGGAGAGGGAGAGTTTTGCTCAGATGTTTAATCCAAACAACAACCTA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGCAGATTATACCGGAGAGGGAGAGTTTTGCTCAGATGTTTAATCCAAACAACAACCTA 600
Query 958 AGTGACGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAGGTGAGATCATT 1017
| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 AATGAAGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAGGAGAGATCATC 660
Query 1018 GAGTTACTCAA-GTTAAGAAGAGGAGCTCCAATCTCCATAGCTTCATTGCCAATGATGTA 1076
||||| ||||| | ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 661 GAGTTGCTCAAAGC-AAGAAGAGGTGCTCCAATCTCCATAGCTTCATTGCCGATGATGTA 719
Query 1077 CTAC-GAAAAATACGGTAGGACTCTTCAAGCTGAAGGATATCTCACTGAGTCACAAAGAC 1135
| | |||| ||||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 720 C-AGTGAAACATACGGTAGGACTCTTCAAGCTGAAGGATATTTAACAGAGTCACAACGAC 778
Query 1136 ATGGCAAAGCTGGCTATAGTCTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCC 1195
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 779 ATGGCAAAGCTGGCTATAGCCTCACCAAGCTTCTTGCTCGCTTGAAGAACACCATCCGCC 838
Query 1196 TCGTCGACAGGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTG 1255
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 839 TCATCGACAGGCCTCATGGGCAGCATTCAGTTATATTAGCAGAAGATGCATCAAAGTTTG 898
Query 1256 TGGAATACACTGGAGAGAGAAATGAACATGGAGCAATCCTTGCTGGTTCTAGACAGATTT 1315
|||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 899 TGGAATACACGGGAGAGAGAAACGAACACGGAGCGATCCTTGCTGGTTCTAGACAGATTT 958
Query 1316 ACTTAACGTTTCCGGCAGAGAGTAGTTTCACTGAACATGATGTCTCAATCTACTTCACCT 1375
||||||| |||||||||||||| ||||||||||||||||||||||| | |||||| |||
Sbjct 959 ACTTAACATTTCCGGCAGAGAGCAGTTTCACTGAACATGATGTCTCCA-CTACTTTACCA 1017
Query 1376 CATAT-GGACAT 1386
||| | ||||||
Sbjct 1018 CAT-TCGGACAT 1028
Score = 1423 bits (770), Expect = 0.0
Identities = 947/1026 (92%), Gaps = 38/1026 (4%)
Strand=Plus/Plus
Query 1422 AATGTATGGATTTGTAACATTTGCTTCCTCAGAAACAGTTAAACACATTCTTGCTAAAGG 1481
||||| |||||||||||||||||||| | ||||||| ||||||| |||||||||||||||
Sbjct 1029 AATGTTTGGATTTGTAACATTTGCTTGCACAGAAACCGTTAAACTCATTCTTGCTAAAGG 1088
Query 1482 CAATCCTCATTTCATTTGCAATGCACGTGTTCTAGTCAAGCCTTACCGGGAAAAATCACG 1541
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1089 CAATCCTCATTTCGTTTGTGGTGCACGTGTTCTCGTCAAGCCTTACCGGGAAAAATCACG 1148
Query 1542 CTCTAGTCGATACCTCGACAATTACAAGCCTCTACACGGCATGCGATATGGCTCTAAATT 1601
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 1149 CTCTAGTCGATACCTTGACAATAACAAGCCTCTACACGGCATGCGTTATGGCTCTCAATT 1208
Query 1602 TATTGAGAGAGACATAGAGATGAACACATTGCCACCGCGGGTTAGTGAGAGCTCAAG--- 1658
|||||| |||||| ||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 1209 TATTGATAGAGACTTAGAGATAAACGCATTGCCACCGCGGGGTAGTGAGAGCTCAAGACT 1268
Query 1659 AATGAGGAAGCCATTTCTTAGTGAGCCTGAACAATCAGTTTCTAAGTCCTTACCTACTAA 1718
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1269 AATGAGGAAGCCATTTCTTAGTGAGCCTGAACAATCTGTTTCTAAGTCCTTACCTACTAA 1328
Query 1719 TTACTCCTACCTCGGCTTCTCCTCGGATGACTTCAAGTTAACATCAAATGCGGAGCAAGA 1778
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct 1329 TTACTCCTACCTCGGCTTCTCCTCGGATGACGTCAAGCTAACATCAAACGCGGAGCAAGA 1388
Query 1779 GGAACAAGCAGAACGGTTGAGCTACCTACTGGACTATTTGAACACGGAAGATAATGTCAT 1838
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1389 GGAACAAGCGGAACGGTTGAGCTACCTACTGGACTATTTGAACACCGAAGACAATGTCAT 1448
Query 1839 GAACATAACCACTAACTACAGAGACAATGATCGGAGAACTCATTGTGAATCGTTGGACAG 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GAACATAACCACTAACTACAGAGACAATGATCGGAGAACTCATTGTGAATCGTTGGACAG 1508
Query 1899 TCAAGTCCTGAATCTACCCGAGAGTCCGTTTTCTTCCCTTTCGGGGAAGGAGATTTCAAC 1958
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1509 TCAAGTCCTGAATCTACCCGAGAGTCCGTTTTCTTCCCTTTCCGGGAAGGAGATTTCAAC 1568
Query 1959 GGTTACATAGAGAGAAAGACTGATACCTAACCAAAGGGAGAGAAAAACATAGGAGCATAA 2018
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1569 GGTTACATAGAGAGAAAGACTGATACCTAACCAAAAGGAGAGAAGAACATAGGAGCATAA 1628
Query 2019 AGGTTAGAGGGAATCCCCAAAGATCTAATCAATCGGCAAAAAAGAGATTTGTTTTTTCAT 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGTTAGAGGGAATCCCCAAAGATCTAATCAATCGGCAAAAAAGAGATTTGTTTTTTCAT 1688
Query 2079 TATCTTCTTTCGGTTTTAGACTGATCGATGGCATGGAGACTTTTAGGTTCTTTAGCAATA 2138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1689 TATCTTCTTTCGGTTTTAGACTGATGGATGGCATGGAGACTTTTAGGTTCTTTAGCAATA 1748
Query 2139 ACACCA-CAAA-GAAAAGGAAATAAAAAGTGACAGAGAAACACACAAAGAAGAGC-TGTT 2195
|||| | |||| |||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 1749 ACAC-ATCAAAAGAAAAGGAAATAAAAAGTGACAGA-AA-CACACAAAGAAGAGCATGTT 1805
Query 2196 AGCTTCAGGTTTACAAA-AAGAGCCGAGCAGTTTGAGAAACA-TTAAGTAAAGGGGTATA 2253
||||||||||||| ||| |||||||||||||||||||| ||| ||| || ||||||||
Sbjct 1806 AGCTTCAGGTTTA-AAATAAGAGCCGAGCAGTTTGAGAGACAATTAC--AATGGGGTATA 1862
Query 2254 ATAATAATTATAATAACATTTGGAATGTTTTATGAAGG-TTAAttttctatttgttcttt 2312
||||||| | | || || ||||||||| || |||| |||||||| ||| ||||||||
Sbjct 1863 ATAATAAG-A-AC-AA--TT-GGAATGTTT-ATTAAGGGTTAATTTTATATATGTTCTTT 1915
Query 2313 ttcttttcaacttttt-tt-ATGCTACTTCATCATATTTCATTGTATCATAT------CC 2364
|||||||||||||||| || ||||| ||||||||||| ||| |||||||||| ||
Sbjct 1916 TTCTTTTCAACTTTTTCTTTATGCTGCTTCATCATATCTCACTGTATCATATGAAAATCC 1975
Query 2365 TTTTTAGTTTTAAGaaaaaaaGGTTTTCTTGtatata-tataaaataataataataataa 2423
|||| ||||||||||||||| ||||| |||||||||| |||| || ||||||||||||
Sbjct 1976 TTTT-AGTTTTAAGAAAAAA-GGTTT-CTTGTATATACTATA---TA-TAATAATAATAA 2028
Query 2424 tTGAAA 2429
||||||
Sbjct 2029 TTGAAA 2034
> Ahg485672 jgi|Araly1|485672|fgenesh2_kg.5__1664__AT3G52980.1
Length=1056
Score = 649 bits (351), Expect = 0.0
Identities = 502/574 (87%), Gaps = 14/574 (2%)
Strand=Plus/Plus
Query 948 CAACAACCT-AAGTGACGAAGAGCATGTTGTTTCCCCTGTATCTCTTGAGAAGCTAGAAG 1006
|||||| || || || |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 489 CAACAA-CTGTAGCGATGAAGAGCATGTTGTTTCCGCTGTATCACTTGAGAAGCTAGAAA 547
Query 1007 GTGAGATCATTGAGTTACTCAAGTTAAGAAGAGGAGCTCCAATCTCCATAGCTTCATTGC 1066
| ||||||||| | | || || | ||||||||| |||||||| ||||||||||| ||||
Sbjct 548 GAGAGATCATTTACCTGCTTAAATCAAGAAGAGGTGCTCCAATTTCCATAGCTTCTTTGC 607
Query 1067 CAATGATGTACTACGAAAAATACGGTAGGACTCTTCAAGCTGAAGGATATCTCACTGAGT 1126
|||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 608 CAATGATGTACTACGAGAAGTATGGTAGGACTCTTCAAGCTGAAGGCTATCTCACTGAGT 667
Query 1127 CACAAAGACATGGCAAAGCTGGCTATAGTCTCACCAAGCTTCTTGCTCGCTTGAAGAACA 1186
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 668 CACAAAGACATGGCAAAGCTGGCTATAGCCTCACCAAGCTTCTTGTTCGCTTAAAGAACA 727
Query 1187 CGATTCGCCTCGTCGACAGGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCAT 1246
| || |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| ||
Sbjct 728 CCATCCGCCTCATCGACAGGCCTCATGGGCAACATTCAGTAATACTAGCAGAAGATGTAT 787
Query 1247 CAAAGTTTGTGGAATACACTGGAGAGAGAAAT-GAACATGGAGCAATCCTTGCTGGTTCT 1305
||||||||||||||| || ||||||| ||| ||||| ||||| ||||||||||| ||
Sbjct 788 TAAAGTTTGTGGAATATACGGGAGAGA-AAAGCGAACACGGAGCGATCCTTGCTGGCTCG 846
Query 1306 AGACAGATTTACTTAACGTTTCCGGCAGAGAGTAGTTTCACTGAACATGATGTCTCAATC 1365
||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
Sbjct 847 AGACAGATTTACTTAACATTTCCGGCGGAGAGTAGTTTCACTGAACATGATGTTTCAAAC 906
Query 1366 TACTTCACCTCA-TATGGAC-ATGTGGAAGATGTGAGGATTCCTTGCCAGCAGAAA-AGA 1422
|| ||| || | | ||||| | |||||||||||||||||||| || || || ||| |||
Sbjct 907 TATTTCTCCAAAGT-TGGACCA-GTGGAAGATGTGAGGATTCCATGTCAACA-AAAGAGA 963
Query 1423 ATGTATGGATTTGTAACATTTGCTTCCTCAGAA-ACAGTTAAACACATTCTTGCTAAAGG 1481
|||| |||||||||||| ||||||| | ||||| || || ||||||||||||||||||||
Sbjct 964 ATGTTTGGATTTGTAACTTTTGCTTACACAGAAGAC-GTCAAACACATTCTTGCTAAAGG 1022
Query 1482 CAATCCTCATTTCATTTGCA-ATGCACGTGTTCT 1514
||||||||||||| | ||| | |||||||||||
Sbjct 1023 CAATCCTCATTTCGTATGCGGA-GCACGTGTTCT 1055
Score = 154 bits (83), Expect = 3e-36
Identities = 127/148 (86%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 742 CCTGAATTCTCTAAC-GGGTTCTTCTCTCAAGA-ACGTCAATGTTTGCCTTTGCGAACTA 799
||||||||||| ||| | |||||||||||||| | ||| || | | ||| ||||||
Sbjct 355 CCTGAATTCTC-AACTAGTTTCTTCTCTCAAGAGA-AACAAGGTCTATCGTTGAGAACTA 412
Query 800 GCCGAAGATCCCCGAGTTTACCCGAGTTCCCGGTAAAAATCTGCCATTACTTCAACAAAG 859
| |||||||| | ||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 413 GTCGAAGATCACTGAGTTTACCGGAGTTTCCTGTAAAAATCTGCCATTACTTCAACAAAG 472
Query 860 GGTTCTGCAAACACGGCAACAACTGTAG 887
|||| |||||||||||||||||||||||
Sbjct 473 GGTTTTGCAAACACGGCAACAACTGTAG 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91797490450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5