BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05210.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480133 jgi|Araly1|480133|fgenesh2_kg.3__2834__AT2G05210.3 2089 0.0
> Ahg480133 jgi|Araly1|480133|fgenesh2_kg.3__2834__AT2G05210.3
Length=1559
Score = 2089 bits (1131), Expect = 0.0
Identities = 1437/1580 (91%), Gaps = 40/1580 (3%)
Strand=Plus/Plus
Query 417 AGATGGCGAAGAAGAGAGAGAGTCCCAAGCTCATCAAAATCAAAGACGCCATTAAACTCA 476
||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 6 AGATGGCGAGGAAGAGAGACAGTCCCAAGCTTATCAAAATCAAAGACGCCATTAATCTCA 65
Query 477 TCAACCAACAAGTCAGTCTCATTGGTATCGTCCTTGAACAAAGAGAACCAAAACAATGTC 536
||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 66 TCAACCAACAAGTTAGTCTAATCGGTATCGTTCTTGAACAAAGAGAACCAAAACAATGTC 125
Query 537 GCAACAATGATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGAC 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GCAACAATGATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGAT 185
Query 597 TTACTGTTAATGTATTTAGTAAGACTCTTGAACAACTTCCTCAAATCAAGAACCACGACG 656
||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 186 TTACTGTGAATGTATTTAGTAACACTCTTGAAGAGCTTCCTCAAATCAAGAACCACGACG 245
Query 657 ACATGATTCTGTTTAC-TCGCATTAAGATGCAAACTTTTGATAGTGGAGAAAGAGTAAAT 715
|||||||||| ||||| | |||| |||||||||||||||||||||||| |||||||||||
Sbjct 246 ACATGATTCTCTTTACAT-GCATCAAGATGCAAACTTTTGATAGTGGAAAAAGAGTAAAT 304
Query 716 GCTGCTTGTAGTAGATGGGTTTCTTCCTTTGC-CTTGTTCGAAGGTGTGGATTTTGTTTG 774
|||||||||| || | |||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 305 GCTGCTTGTAATAAAAGGGTTTCTTCGTTTGCGCT-GTTCGAAGGTGAGGATTTTGTTTG 363
Query 775 TTACCAATGTAGTACCAATTTTCATGAAGAAGAAGCATTATACAAGAGTGCCATGGATGA 834
||||||||||| | | ||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 364 TTACCAATGTACTTCGAATTTTCATGAAGAAGAAGCACTATACAAGAGTGCGATGGCTGA 423
Query 835 TTTACGCAAAGTTTTTGCGGGTTGTAGCCAAGTTATTAAAGCTATGCAGAGTATATCTTA 894
| | |||||| ||||||| |||||||| ||||| ||| |||| ||||||||||||||||
Sbjct 424 TCTGCGCAAATTTTTTGCTAGTTGTAGCGAAGTTGTTAGAGCTTTGCAGAGTATATCTTA 483
Query 895 CAGAACAAAACCTTGCTCCGAAGT---TTTTTCCTTCTTGAGAGAGATCAAGATAGGAAA 951
||| ||| |||| ||||| | || |||||| ||||||||||||||||||| ||||||
Sbjct 484 CAGGACAGAACCCTGCTCTGTAGAAACTTTTTCATTCTTGAGAGAGATCAAGAAAGGAAA 543
Query 952 ACGCTTTGATTTGGTGTGCAGGATTCTCCATGCCGATGAAGATACT-AGCGCTGTTTTTG 1010
|||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||
Sbjct 544 ACGCTTTGATTTGGTGTGCAGGATTCTCCATGCCGATGAAAATA-TGAGCGCCGTTTTTG 602
Query 1011 TTTGGGACGGGACTGATGCACCCCCAGCATCTATTCTGGCTAAGAGAAGTGAAGAAGACA 1070
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 603 TTTGGGATGGAACTGATGCACCCCCAGCATCTATTCTGGCAAAGAGAAGTGAAGAAGACA 662
Query 1071 AGGCATTTAGCAGTCTCTCTGTTCATACTTTACTGTCAAGAGATGTACTGCTCAGCTTTC 1130
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 663 AGGCATTTAGCAGTCTCTCTGTTCATACTTTACTGTCAAGAGATATATTGCTCAGCTTCC 722
Query 1131 CAACCGTTGGAACGATCTTGAGAGTT-CATCTAAGCAGTCATCTATTTTATCGGGTTAAA 1189
|||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 723 CAACTGTTGGAACGATCTTGAGAGTTTC-TCTAAGCAGTCATCTATTTCATCGGGTTAAA 781
Query 1190 CCTGGTGATTGGGT-GAAACTTTACCATTTACTCTGTGAAGTTGATAGAGG-ATCTTGGG 1247
|||||||||||||| ||| |||||||| |||| |||||||||||||| ||| ||||||||
Sbjct 782 CCTGGTGATTGGGTAGAA-CTTTACCAGTTACACTGTGAAGTTGATA-AGGGATCTTGGG 839
Query 1248 TAATCAAAGTTACCAGCTCTACAAAGGTTCATCATCTCGCTCAAGATGATCGTTTAGTTG 1307
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 840 TAATCAAAGTTACCAACTCTACAAAGGTTCGTCATCTCGCTCAAGATGATTGTTTAGTTG 899
Query 1308 AAAAGATCATGAGGATATATGATAAGAGACTATCATCAAAGTTGGGACACATTTCATTCT 1367
|||||||||||||| ||||| |||||||| |||||||||| |||||||||||| | ||||
Sbjct 900 AAAAGATCATGAGGCTATATAATAAGAGAATATCATCAAAATTGGGACACATTCCGTTCT 959
Query 1368 GGTGTTTTCCGTCACCTCCTGGATTAACAGAGACAGATGACAATTGTGCCCCATTTGTTA 1427
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 GGTGTTTTCCGTCACCTCCTGGATTAACAGAGACAGATGAGAATTGTGCCCCATTTGTTA 1019
Query 1428 CACTGATGGACATCATAACATTCCCCAAGGTTACATGCAAGTACAGATGTATTGTTCGGG 1487
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 CACTTATGGACATCATAACATTCCCCAAGGTTACATGCAAGTACAGATGCATTGTTCGGG 1079
Query 1488 TTGTAGCTGCATATCCTTGGCAAGTAGAGGATTTCTGTTCAGATGAGAATCGCCGTCACC 1547
||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| |||||
Sbjct 1080 TTGTAACTGCATATCCTTGGCAAGTAGATGATTTTTGTTCAAATGAGAATCGCCATCACC 1139
Query 1548 ACCAAGTTTTGTTGACACTGGAGGATTCAACAGCGACTTTAGAGGCTTTCTTATGCAATA 1607
| ||||||||||| || |||||| ||||||||||||||||||||||||||||| |||
Sbjct 1140 G--A-GTTTTGTTGACTCTTGAGGATCCAACAGCGACTTTAGAGGCTTTCTTATGCGATA 1196
Query 1608 AAGACGCAGAGTACTTTTGGGGTTTAGGGTTTCAGGACACAGAGACGCTGAGGAAGAAGC 1667
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1197 AAGATGCTGAGTACTTTTGGGGTTTAGGGTTTCAGGACACAGAGACATTGAGGAAGAAGC 1256
Query 1668 GGAATTGGTTGCTCGGTATACGGGAAAGCTCGAACTTTGTGGCTCCAAGAAATCCACCAT 1727
|||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 GGAATTGGTTGCTCGGAATAAGGGAAAGCTTGAACTTTGTGGCTCCAAGAAATCCACCAT 1316
Query 1728 GGATCGAGTGCTGCATCCTCTCCTACTATACTAACAAAGCTGACCCGTGGAATACTAGAT 1787
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1317 GGATAGAGTGCTGCATCCTCTCCTACTATACTAACAAAGCTGACCCGTGGAAAACCAGAT 1376
Query 1788 TATACAGAATCTTTGGTACTAGACTACTTCATTAAGTATTTGTAAGTGTTAAAAGAGGAT 1847
||||||||||||||||||||||||||||| | |||||| |||| ||| | ||
Sbjct 1377 TATACAGAATCTTTGGTACTAGACTACTTAACTAAGTAAA---AAGT-TTA---GT--AT 1427
Query 1848 TAAATAGTTTAGTATTAGGCTCATGTTAAGAATGTTGGAT-TTGGCTTACTTAAGTATGG 1906
|| | |||| || | |||||||||||||||||| ||| || |||| |||||||
Sbjct 1428 TAGG--GCTTAG-AT----C--ATGTTAAGAATGTTGGATGTTG-CTGACTTTAGTATGG 1477
Query 1907 TAGTTGTGTTGTTTTAGTTCATGAAGACCTTGTAACCAAAAGAACATCTTCATGATATTA 1966
|||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||| |
Sbjct 1478 TAGTTGTGTTGTTTTATTTCATTAAGAACTTGTAACCAAACGAACATCTTCATGATATAA 1537
Query 1967 ACCAAATCCAA-AGACTGAA 1985
||||||||||| | ||||||
Sbjct 1538 ACCAAATCCAACA-ACTGAA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5