BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05230.1
Length=2849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930843 jgi|Araly1|930843|scaffold_303300.1 3349 0.0
Ahg493634 jgi|Araly1|493634|fgenesh2_kg.7__3067__AT5G35753.1 169 1e-40
> Ahg930843 jgi|Araly1|930843|scaffold_303300.1
Length=2155
Score = 3349 bits (1813), Expect = 0.0
Identities = 2044/2153 (95%), Gaps = 26/2153 (1%)
Strand=Plus/Plus
Query 415 TACATGGAAGCTTACAGAGAGGAAGCTCTCAGAGTGAAACAGATCGCTGAGAGGAGATTT 474
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 25 TACATGGAAGCTTACAGAGAGGAAGCTCTCAGAGTGAAACAAATCGCCGAGAGGAGATTT 84
Query 475 GCGGAGAAAGATTTCACAAGCGCTAGGAGTTATGCGTTGAAAGCGAAGTCTTTGTTTCCT 534
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GCGGAGAAAGATTTCACGAGCGCTAGGAGTTATGCGTTGAAAGCGAAGTCTTTGTTTCCT 144
Query 535 GATTTGGAAGGTTTATCTCAGATGGTTGCGACGTTTGAAGTTTATTTAGCTTCTCAGACT 594
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 145 GATTTGGAAGGTGTGTCTCAGATGGTTGCTACGTTTGAAGTTTATTTAGCTTCTCAGACT 204
Query 595 CGAAGCGGTGGTCAGATTGATTATTACGCGGTACTTGGACTGAAACCGTCTGCGGGGAAA 654
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 205 AGAAGTGGTGGTCAGATTGATTATTACGCGGTACTTGGACTGAAACCGTCGGCTGGGAAA 264
Query 655 AGAGAAGTGAAGAAACAGTATAAGAAGATGGCTGTATTGCTTCATCCTGATAAGAACAAA 714
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 265 AGAGAAGTGAAGAAGCAGTACAAGAAGATGGCTGTATTGCTTCATCCTGATAAGAACAAA 324
Query 715 TGCATTGGAGCTGATGGTGCATTTCATCTCATATCTGAAGCTTGGAGTTTCTTGTCTAAT 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 325 TGCATTGGAGCTGATGGTGCATTTCATCTCATATCTGAAGCCTGGAGTTTCTTGTCTAAT 384
Query 775 GAGTTTAATAAAAGCACTTTTTATTACAAAAGAAAGAAGCATATTGACTCCACTGAGGTT 834
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 385 GAGTTTAATAAAAGCACTTTTTATTACAAAAGAAAGAAGCATATCGACTCCACGGTGGTT 444
Query 835 CAGAAGCATAGCACAGAGTACATGCCTGGGACTGGGACTGGGACGGGGACTGCAGTATTT 894
|||||||| ||||||||||||||| | ||||||| | |||||||| ||||||
Sbjct 445 CAGAAGCACAGCACAGAGTACATG-C-----CTGGGAC----A--GGGACTGCGGTATTT 492
Query 895 GATCGGTTTCCACCATCTTCAGAAAGGCTTGATACTTTCTGGACTGTATGCACCTCTTGC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 493 GATCGGTTTCCACCATCTTCAGAAAGGCTTGATACTTTCTGGACTGTATGCACATCTTGC 552
Query 955 AAAGTTCAGTATGAGTATC-TGAGGAAGTATGTGAATAAGAGGCTTTCATGTAAGAACTG 1013
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AAAGTTCAGTATGAGTA-CTTGAGGAAGTATGTGAATAAGAGGCTTTCATGTAAGAACTG 611
Query 1014 TCGTGGAGCATTTATTGCTGTAGAAACTGGTCCAGCTCCTGTTAGTGCACCATTTCATTA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TCGTGGAGCATTTATTGCTGTAGAAACTGGTCCAGCTCCTGTTAGTGCACCATTTCATTA 671
Query 1074 CACGCCTCCATCCCATGCGCCTCCCTCTCATGCGCCTCCATCTCATGCGCCTCCGAGTAA 1133
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 672 CACGCCTCCATCTCATGCGCCTCCGTCTCATGCGCCTCCATCTCATGCGCCTCCGAGTAA 731
Query 1134 TGGCTATGGTGCACATGGTTATGATGCTATGTCACGCATGCCCACCAATTCCACGTATTT 1193
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGGCTATGGCGCACATGGTTATGATGCTATGTCACGCATGCCCACCAATTCCACGTATTT 791
Query 1194 CTTAGGCCACTATCCTGGGCAAGGACATGGATATGATTATAGTACGAATGGTTCATATGA 1253
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 792 CTTAGGGCACTATCCTGGGCAAGGACATGGATATGATTATGGTACGAATGGTTCATATGA 851
Query 1254 ATGGAGCTCGTACTCTGGAACAACAACCTCCCCAGGGAATCTGGATTTGAAGCGTGTGTC 1313
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 852 ATGGAGCTCGTACGCTGG---AACAACCTCCCCAGGGAATCTGGATTTGAAGCGTGTGTC 908
Query 1314 CTCAGTGTCTAATGGGTATCCTTATAAGCACAGCAACTCAGTAGTCAGCGGGGGAATAAA 1373
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 909 CTCAGTGTCCAATGGGTATCCTTATAAGCACAGCAACTCAGTAGTCAGCGCGGGAATAAA 968
Query 1374 TAAAGTCAAAGATGGTTCTAATGGGACATGCTCGAAGAAAAGCACACCA-GGTGGTCTGA 1432
|||||||||||| ||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 969 TAAAGTCAAAGACGGTTCTAATGGGACATGCTCGAAGAAAAGCACA-CATGGAGGTCTGA 1027
Query 1433 TATATCCTAATCAGATCAGCATGTCTGCTCACGCGAGTGCAAATAAGGTCGGCAGACCTG 1492
|||||||||||| | |||||||||||||||| ||| || |||||||||||||||||
Sbjct 1028 TATATCCTAATCCGCCCAGCATGTCTGCTCACACGACTG---TTAAGGTCGGCAGACCTG 1084
Query 1493 GGAAGAAAAGCAAAGTTTTTATGGAAGCTGCTGCTAATGGATTTGTTGAGAACCCTCTGA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GGAAGAAAAGCAAAGTTTTTATGGAAGCTGCTGCTAATGGATTTGTTGAGAACCCTCTGA 1144
Query 1553 GATCTGTTTCAGTATCAAAGACAGCGAATACAGATGCCAAAATGGATCAGGATTACAAAC 1612
|||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||
Sbjct 1145 AATCTGTTTCAGTATCAAAGACAACAAATGTGGATGCCAAAATGGAACAGGATTACAAAC 1204
Query 1613 TTCATATCCAAAGTTCAACTAGACGTTGGTCTGCTGCATCAGTATTGGATACACGGA-AG 1671
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1205 TTCATCTCCAAAGTTCAACTAGACGTTGGTCTGCTGCATCAGTAATGGATACACGGACA- 1263
Query 1672 CCCTTAATTCAAAAGGCCAGAACAGATATCAAGCAAAGATTGGAGATGATGAGATTGGCT 1731
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1264 CCTTTAATTCAAAAGGCCAGAACAGATATCAAGCAAAGATTGGAGATCATGAGATTGGCT 1323
Query 1732 TTAGAGGCAGCAGCGGCTGCAGAGGATGCAACACCCCTTGATGAAAAAACTGTTCTCTCC 1791
| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 1324 TCAGAGGCAGCAGCGGCAGCAGAGGATGCGACACCACTTGATGAAAAAACTGTTATCTCC 1383
Query 1792 TGTAAGTTGGGAGATGTTACAGGG-CGCAAAACTAACGGGCCAATAACAGTTCCAGACTC 1850
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1384 TGTAAGTTGGGAGATGTTAC-GGGACGCAAAACTAACGGGCCAATAACAGTTCCAGACTC 1442
Query 1851 TGATTTCCATGACTTTGATAAAAACAGATCGGAGGAATCCTTTGAGCCAAGGCAAATATG 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGATTTCCATGACTTTGATAAAAACAGATCGGAGGAATCCTTTGAGCCAAGGCAAATATG 1502
Query 1911 GGCAATTTATGATGAAGATGATGGTATGCCACGCCTATATTGTGTGGTGAGGGAAGTACT 1970
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1503 GGCAATTTATGATGAAGATGATGGTATGCCACGCCTATATTGTGTGGTTAGGGAAGTACT 1562
Query 1971 CTCAGTTCAACCCTTTAAGATTGACATTGCCTACTTAAGCTCTAAAACCGACATCGAGTT 2030
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1563 CTCGGTTCAACCCTTTAAGATCGACATTGCCTACTTAAGCTCCAAAACCGACATCGAGTT 1622
Query 2031 TGGGTCAATGAAATGGGTACAATATGGGTTTACAAAGTCGTGTGGACATTTCAGGATACG 2090
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1623 TGGGTCAATGAAATGGGTACAATACGGGTTTACAAAGTCGTGTGGACATTTCAGGATACG 1682
Query 2091 AAACTCTGACATAGTAGACCATGTTAACATCTTTTCGCATCTTTTAAAAGGCAAGAAGAC 2150
||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1683 AAACTCTGACATAGTTGACCAAGTTAACATCTTTTCGCATCTATTGAAAGGCAAGAAGAC 1742
Query 2151 AGGGAGAGGTGGTTGTGTTCGAATCTTCCCCACAGCTGGGGAGATTTGGGCCGTCTACAA 2210
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1743 AGGGAGAGGTGGTTGTGTTCGAATCTTCCCCACAACTGGGGAGATTTGGGCTGTCTACAA 1802
Query 2211 GAACTGGTCACTGAACTGGGACGGATCAACACCGGACGAAGTGAGGCACCAATATGAAAT 2270
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1803 AAACTGGTCACTAAACTGGGATGGATCAACACCGGACGAAGTGAGGCACCAATATGAAAT 1862
Query 2271 GGTCGAGATTCTTGATGAGTATACTGAACAGTATGGTGTGTGCGTTACCCCTCTTGTTAA 2330
||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||
Sbjct 1863 GGTTGAGATTCTTGATGAGTATACTGAACAGTATGGTGTGTGTGTTGCCCCACTTATTAA 1922
Query 2331 ATTAGAGGGCTACAAAACCGTGTATCACAGGAGCACAAGGGAGGACAGTAAGAAGTGGAT 2390
| ||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1923 ACTAGAGGGTTACAAAACCGTATATCACAGGAGCACGAGGGAGGAAAGTAAGAAGTGGAT 1982
Query 2391 ACCAAGGTGTGAAATGTTGCGGTTTTCACATCAAGTGCCGTCTTGGTTTCTTAAAGATGC 2450
||| ||||| || |||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 1983 ACCGAGGTGCGAGATGTTGAGGTTCTCGCATCAAGTGCCGTCTTGGTTTCTTAAAGATGC 2042
Query 2451 AACCAGCGGCTTTCCCGAAAACTGTTGGGACTTAGATCCAGCTGCAATCCCCGAGGAGCT 2510
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 AACCAGCGGCTTTCCCGGAAACTGTTGGGACTTAGATCCAGCTGCAATCCCCGAGGAGCT 2102
Query 2511 GCTTCACATCGGAGCAGGAACCAATTGATTTCAGTGACCCTGTAAGAGAAAGA 2563
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2103 GCTTCACATCGGAGCAGGAACCAATTGATTCCAGTGACCCTGTAAGAGAAAGA 2155
> Ahg493634 jgi|Araly1|493634|fgenesh2_kg.7__3067__AT5G35753.1
Length=1386
Score = 169 bits (91), Expect = 1e-40
Identities = 129/147 (88%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 2010 CTCTAAAACCGACATCGAGTTTGGGT-CAATGAAATGGGTACAATATGGGTTTACAAAGT 2068
||| ||||| ||||| |||||| ||| ||||||||||||| || ||||||||||||||||
Sbjct 897 CTCCAAAACTGACATTGAGTTT-GGTACAATGAAATGGGTGCAGTATGGGTTTACAAAGT 955
Query 2069 CGTGTGGACATTTCAGGATACGAAACTCTGACATAGTAGACCATGTTAACATCTTTTCGC 2128
|||||||||||||| ||||||||||| |||||||| | || ||||||||||| ||||| |
Sbjct 956 CGTGTGGACATTTCCGGATACGAAACACTGACATAATTGATCATGTTAACATATTTTCCC 1015
Query 2129 ATCTTTTAAAAGGCAAGAAGACAGGGA 2155
|||| || ||||||||||| || ||||
Sbjct 1016 ATCTCTTGAAAGGCAAGAAAAC-GGGA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107528761635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5