BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05260.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905858 jgi|Araly1|905858|Al_scaffold_0003_2986 1574 0.0
> Ahg905858 jgi|Araly1|905858|Al_scaffold_0003_2986
Length=1077
Score = 1574 bits (852), Expect = 0.0
Identities = 1005/1080 (93%), Gaps = 6/1080 (1%)
Strand=Plus/Plus
Query 154 ATGGCCTCTGATAGAGAAGAGTTTAACTTGTGTGGACCTACACACCTCACAACTGTTGAT 213
||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1 ATGGCTTCTGATAGAGAAGAGTTTAACTTGTGTGGACCTTCACATCTCACAACTGTTGAT 60
Query 214 TGGGGAAATGAAGATCACCAACGTTGTGTAGCAGCTTGTTTGGTACAAGGAATCTATATA 273
|||| ||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 61 TGGGCAAATGAAGATCACCAGCGTTGTGTAGCAGCGTGTTTGGTTCAAGGAATATATATA 120
Query 274 GTAGAGCAAGACCGTCAGCTTAAACGTGAAGGCACTGAAGCTCTTGCATCTCCATGGTGG 333
||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 121 GTAGAGCGTGATCGTCAGCTTAAACGTGAAGGTTCTGAAGCTCTTGCACCTCCATGGTGG 180
Query 334 GAATCATTCAACTTTAAATTGATCCGTCACCTTAAAGACGATGCTGATTTCTCCATCTTT 393
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GAATCCTTCAACTTTAAATTGATCCGTCACCTTAAAGACGATGCTGATTTCTCAATCTTT 240
Query 394 GGTGGCATTTTTGAATACAAATCGTTACAGCCAGATGTTGTGGACTCTGGAGTTCCACGG 453
|| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GGCGGTATTTATGAATACAAATCGTTACAGCCAGATGTTGTGGACTCTGGAGTTCCGCGG 300
Query 454 TATGTTATAGCCTTTAGAGGGACTTTGACTAAAGCGGATTCGATAACCCGTGATATCGAG 513
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATGTTATAGCGTTTAGAGGGACTTTGACTAAAGCGGATTCGATAACCCGTGATATCGAG 360
Query 514 TTGGATATCCATATTATACGGAATGGGCTTCACCGAACGTCGCGTTTTGAGATAGCGATG 573
||||||||||||||||| |||||||||||||||||||| || ||||||||||| || |||
Sbjct 361 TTGGATATCCATATTATCCGGAATGGGCTTCACCGAACATCCCGTTTTGAGATTGCTATG 420
Query 574 CAAGCTGTGAGAAGTATGGCTGATTCTGT-GGGAGCTTCGAGCTTTTGGCTTACGGGGCA 632
||||||||||||||||||||||||||||| ||| ||||| ||||||||||| || |||||
Sbjct 421 CAAGCTGTGAGAAGTATGGCTGATTCTGTTGGG-GCTTCAAGCTTTTGGCTAACAGGGCA 479
Query 633 TTCTTTAGGTGCAGCGATGGCGCTTCTTGCTGGTAAAACAATGGGGAAGAGTGGAGTTTA 692
||| | |||||||| |||||||| || ||||| |||||||||| |||| |||| ||||
Sbjct 480 TTCCCTGGGTGCAGCTATGGCGCTCCTCGCTGGCAAAACAATGGCAAAGACTGGAATTTA 539
Query 693 TATTAAGTCATTGTTGTTTAACCCTCCTTATGTGTCTCCCCCGATTGAGAGGATAGCAAA 752
||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 540 TATCAAATCTTTGTTGTTTAACCCTCCATATGTGTCTCCCCCGATCGAGAGGATAGCAAA 599
Query 753 CGAACGGGTTAGGCACGGGATTAGATTCGCGGGGAGTCTAATCACCGCAGGACTCGCTCT 812
|||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || ||
Sbjct 600 CGAACGGGTTAGGCACGGGATTAGATTCGCAGGGAGCCTCATCACAGCAGGACTAGCGCT 659
Query 813 CTCTAGAACTCTTAAACAAACACAGCAGCCGCAACAACAGCAACTGCAACTACAAAACTT 872
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 CTCCAGAACTCTTAAACAAACACAGCAGCCGCAGCAACAGCAACTGCAACTACAAAACTT 719
Query 873 GACTGAAGATCCACTAGAGGCATTATCTTCGTGGCTCCCTAACATACATGTAAATCCAGG 932
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 GACTGACGATCCGCTAGAGGCACTATCTTCGTGGCTCCCTAACATACATGTAAATCCAGG 779
Query 933 GGACCATCTATGTTCGGAGTATATCGGGTTTTTCGAGCACCGGGGAA-ATATGGAACAGA 991
||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct 780 GGACCATCTATGTTCAGAGTATATCGGATTTTTCGAGCACCGGGGAACA-ATGGAACAGA 838
Query 992 TTGGGTATGGAGCCGGAATTGTGGAGCGGATGGCGATGCAGCATTCCTTGGGAGGTTTGT 1051
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCGGGTATGGGGCCGGAATTGTGGAGCGGATGGCGATGCAGCATTCCTTGGGAGGTTTGC 898
Query 1052 TGATGGATGCGATGGGAGTGAGCAATGCAGTTGAAGTAGAAGAGCCGGTTCATGTCATCC 1111
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 TAATGGATGCTATGGGAGTGAGCAATGCAGTGGAAGTAGAAGAGCCGGTTCATGTCATCC 958
Query 1112 CATCTGCTAATCTTATAGTAAACAAAACCATAT-CCGAAGATTACAAGGACGCTCATGGG 1170
||||||| ||||||||||||||||| |||| || |||||||||||||||| ||||||||
Sbjct 959 CATCTGCAAATCTTATAGTAAACAAGACCA-ATTCCGAAGATTACAAGGATGCTCATGGA 1017
Query 1171 ATACACCAATGGTGGAGAGATGACCAAGATTTGGTTTCCCACATTTACATGTACAAATAG 1230
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 ATACACCAATGGTGGAGAGATGACCAAGAATTGGTTTCCCACATTTACATGTACAAATAG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5