BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05310.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480141 jgi|Araly1|480141|fgenesh2_kg.3__2842__AT2G05310.1 763 0.0
> Ahg480141 jgi|Araly1|480141|fgenesh2_kg.3__2842__AT2G05310.1
Length=496
Score = 763 bits (413), Expect = 0.0
Identities = 468/494 (95%), Gaps = 5/494 (1%)
Strand=Plus/Plus
Query 38 ATACAAAAACAAAACGTTTAGTTGTTGGAAATGGCAGCAAAACTCTGCATTCCCTCTTCT 97
||||||||||||||||| |||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 4 ATACAAAAACAAAACGTATAGTTGTTGGAAATGGCAGCCAAATTCCGCATTTCCTCTTCT 63
Query 98 TCGTTTAGCCACAGAACTAATGATTCCATAACCTCATCATCTTCTTCATATTCATCATTG 157
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 64 TCGTTTAGCCACAGGGCTAATGATTCCACAACCTCATCATCTTCTTCATATTCATCATTG 123
Query 158 CTTGCTTTGCCTCAATTCTTCTGTCCACCATCTCCATTAGGATTCCCACAGTTCAAGCTT 217
|||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||
Sbjct 124 CTTGCTTTGCCTCAATTCCTCTGTCCACCACCACCATTACGATTCCCACAGTTCAAGCTT 183
Query 218 CACGCCAAGTTAGGTGGAGGAGATGGAGAAGTGAAGCCTAAAGATAAGAAGAAGTTCATT 277
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CACGCCAAATTAGGTGGAGGAGATGGAGAAGTGAAGCCTAAAGATAAGAAGAAGTTCATA 243
Query 278 ACCAAAGATGAAGAACCAGAACAGTATTGGCAAAGCGTTGGAGAAAGAGAAGGAGAGAAT 337
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ACCAAAGAGGAAGAACCAGAACAGTATTGGCAAAGCGTTGGAGAAAGAGAAGGAGAGAAT 303
Query 338 CCGATGAAGACGCCTCTTCCTTACATTATCATCTTCGGTATGTCAACGCCATTCGTCATC 397
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 CCGATGAAGACGCCTCTTCCTTACATAATCATCTTCGGTATGTCAACGCCATTCGTCATC 363
Query 398 TTAGCCATTGCTTTTGCCAATGGTTGGATCAAAGTTCCCATTCGTTGATAGCCTTTCTTT 457
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 364 TTAGCCATTGCTTTCGCCAATGGTTGGATCAAAGTTCCCATTCGTTGA--GCCTTTCTTT 421
Query 458 TTTGCTTCTGCTAC---ACTTGTGTAAGGCTGAATCTTAAACATGTTTCTTATACTCTTC 514
||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 422 TTTGCTTCTTCTTCTTCACTTGTTTAAGGCTGAATCTTAAACATGTTTCTTATACTCTTC 481
Query 515 TTCTTCGGCTGTAA 528
||||||| ||||||
Sbjct 482 TTCTTCGACTGTAA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5