BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05320.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480143 jgi|Araly1|480143|fgenesh2_kg.3__2844__AT2G05320.1 1991 0.0
> Ahg480143 jgi|Araly1|480143|fgenesh2_kg.3__2844__AT2G05320.1
Length=1404
Score = 1991 bits (1078), Expect = 0.0
Identities = 1224/1296 (94%), Gaps = 4/1296 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAATCTTTGGAAGAAGCAGAGATTGAGAGATACAGGTTTATGTCGTTTAGGGATT 60
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCAAATCTTTGGAAGAAGCAGAAACTGAGAGATACGGGTTTATGTCGTTTAGGGATT 60
Query 61 CTATTTGCTGTTACTTTGTCTATAGTTCTGATGTTGGTGTCTGTACCTAGAACTGCTTTG 120
|||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTATTTGCAGTTACCGTCTCTATAGTTCTGATGTTGGTGTCTGTACCTAGAACTGCTTTG 120
Query 121 AATGGTTCTTCTATTGACGATGATTTGGATGGTTTAGATAAAGATTTGGAAGCTAAGCTT 180
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 121 AATGGTTCTTCCATTGACGATGATTTGGATGGTTTGGATAAAGATTTGGAAGTTAAGCTT 180
Query 181 AATGCTTCATTGCTAAGTGTAGCTAGAGGTAATAGAATGTCTCTAAGGTTGCATAGAAGG 240
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 AATGCTTCTTTGCTAAGTGTAGCTAGAGGTAATAGAATGTCTCTTAGTTTGCATAGAAGG 240
Query 241 AACCATTTTTCGCCTAGAAATACGGATCTGTTCCCGGATTTGGCAAAAGATCGTGTGGTT 300
||| |||||||||| || ||| |||||||| |||||||||||| |||||||||||||||
Sbjct 241 AACTATTTTTCGCCGAGGAATTTGGATCTGTACCCGGATTTGGCGAAAGATCGTGTGGTT 300
Query 301 ATCGTCTTGTATGTGCATAATCGGGCTCAGTATTTTCGAGTCACAGTGGAAAGTTTGTCG 360
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 301 ATCGTCTTGTATGTGCATAATCGGGCTCAGTATTTTCGAGTAACTGTGGAAAGTTTGTCA 360
Query 361 AAGGTTAAAGGTATAAGTGAGACATTGTTGATTGTTAGTCATGATGGTTACTTTGAAGAG 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AAGGTTAAAGGGATAAGTGAGACATTGTTGATTGTTAGTCATGATGGTTACTTTTTAGAG 420
Query 421 ATGAATAGGATTGTGGA-GAGTATTAAGTTTTGTCAAGTGAAACAGATTTTCTCGCCTTA 479
||||||| ||||||||| | | |||||||||||||| ||||||||||| |||||||| ||
Sbjct 421 ATGAATAAGATTGTGGATG-GGATTAAGTTTTGTCAGGTGAAACAGATATTCTCGCCGTA 479
Query 480 TTCGCCTCATATATATCGTACTAGCTTCCCGGGTGTGACCCTGAATGATTGTAAGAACAA 539
|||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 480 TTCGCCTCATATATTTCGGACTAGTTTCCCCGGTGTGACCCCGAATGATTGTAAGAACAA 539
Query 540 GGGTGATGAGGCAAAGGGGCATTGTGAAGGTAA-TCCTGATCAGTATGGGAATCATCGGT 598
||||||||||| |||| |||||||||||| || ||| ||||||||||||||||||||||
Sbjct 540 GGGTGATGAGGTAAAGACGCATTGTGAAGG-AAGTCCGGATCAGTATGGGAATCATCGGT 598
Query 599 CTCCGAAGATTGTATCTTTGAAGCATCACTGGTGGTGGATGATGAACACTGTATGGGATG 658
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 CTCCAAAGATTGTATCTTTGAAGCATCACTGGTGGTGGATGATGAACACGGTATGGGATG 658
Query 659 GGTTGGAAGAGACTAAAGGACATGAGGGGCATATCCTTTTCATTGAAGAAGATCATTTTC 718
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 659 GGTTGGAAGAGACTAAAGGACACGAGGGTCATATCCTTTTCATCGAAGAAGATCATTTTC 718
Query 719 TGTTTCCTAATGCCTATCGTAACATACAGACTCTTACGAGGCTGAAACCCGCAAAGTGTC 778
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 719 TTTTTCCTAATGCCTATCGTAATATACAGACTCTCACGAGGCTGAAACCCGCAAAATGTC 778
Query 779 CTGACTGTTTTGCTGCTAATTTAGCACCGTCTGATGTGAAGTCAAGAGGAGAAGGGCTTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTGACTGTTTTGCTGCTAATTTAGCACCGTCTGATGTGAAGTCAAGAGGAGAAGGGCTTG 838
Query 839 AAAGTTTGGTTGCAGAGAGAATGGGAAATGTTGGGTATTCTTTTAATAGAAGTGTGTGGG 898
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 839 AAAGTTTGGTTGCAGAGAGAATGGGAAATGTCGGGTATTCTTTTAATAGAAGTGTTTGGG 898
Query 899 AGAATATTCATCAGAAGGCAAGAGAGTTTTGTTTCTTTGATGATTACAACTGGGATATAA 958
||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 AGAATATACACCAAAAGGCAAGAGAGTTTTGTTTCTTTGATGATTACAATTGGGATATAA 958
Query 959 CGATGTGGGCAACGGTTTTCCCGTCGTTTGGTTCCCCGGTGTACACATTGCGAGGGCCTA 1018
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 959 CGATGTGGGCAACGGTTTTCCCATCGTTTGGTTCCCCTGTTTACACATTGCGAGGGCCTA 1018
Query 1019 GGACTAGTGCGGTACACTTTGGAAAATGTGGGTTGCATCAAGGTAGAGGAGATGAGGGTG 1078
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAACCAGTGCGGTCCACTTTGGAAAATGTGGGTTGCATCAAGGTAGAGGAGATGAGGGTG 1078
Query 1079 ATTGCATCGATAATGGGGTCGTAAACATAGAAGTTAAGGAAACAGATAAAGTTGTGAACA 1138
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1079 ATTGCATCGATAATGGGGTTGTAAACATCGAAGTTAAGGAAACAGATAAAGTTGTGAACA 1138
Query 1139 TAAAAGAAGGATGGGGAGTTCGGGTGTATAAGCATCAAGCGGGTTATAAAGCCGGTTTCG 1198
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1139 TAAAAGAAGGATGGGGAGTTCGGGTGTATAAGCATCAAGCGGGCTATAAAGCTGGTTTCA 1198
Query 1199 AAGGTTGGGGAGGTTGGGGCGATGATAGGGACCGACATTTATGTTTGGATTTTGCCACTA 1258
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1199 AAGGTTGGGGAGGTTGGGGCGATGAAAGGGACCGACATTTATGTTTGGATTTTGCCACTA 1258
Query 1259 TGTATCGTTACAGCAGTAGCAGTGCATCTCCATGAA 1294
||||||||| ||||||||||||||||||||||||||
Sbjct 1259 TGTATCGTTCCAGCAGTAGCAGTGCATCTCCATGAA 1294
Score = 97.1 bits (52), Expect = 3e-19
Identities = 94/112 (84%), Gaps = 11/112 (10%)
Strand=Plus/Plus
Query 1333 AGGGATTGCTTTCTTGTT-ATGTGCTTAGTGACTC-AAT----T--AG-CTTGTTGTATT 1383
|||||||| |||||| || |||||||| ||||||| | | | | |||||||||||
Sbjct 1294 AGGGATTGTTTTCTT-TTAATGTGCTTTGTGACTCGATTGGCCTCGGGTCTTGTTGTATT 1352
Query 1384 TTTGATTGTTATATCTT-GTTTGTATCACCTGAAGTATTTCACTTTCTATAC 1434
|||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1353 TTTGATTGGTATGCCTTTGTTTGTATCACCTGAAGTATTTCACTTTCTATAC 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5