BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05330.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905861 jgi|Araly1|905861|Al_scaffold_0003_2989 693 0.0
> Ahg905861 jgi|Araly1|905861|Al_scaffold_0003_2989
Length=669
Score = 693 bits (375), Expect = 0.0
Identities = 488/541 (90%), Gaps = 14/541 (3%)
Strand=Plus/Plus
Query 104 TGGCATCAAGATCGGCGGTTTTGAAGAAGATGCTAGAATCAGACGAGTTCAAGACTTCGG 163
||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||| |
Sbjct 137 TGGCATCAAGATCGGAGGTTTTTAAAAAGATGCTAGAATCAGACGAGTTCAAGAATTCAG 196
Query 164 CTAAGCAGGTGGGAACAATCACTCTCTTAGAGATGAAACAAGAAGAGCTAGAAGCTTTTG 223
|| | | || |||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 197 CT-A--A---GGAAACAATCACTCTCTCAGAGATAAAACAAGAAGAGTTAGAAGCTTTTG 250
Query 224 TTGAGTTTCTATATAGTGATGGTTCTATGCTTTCTTCGAAAGTGAAGCAACATGCTCGGG 283
|||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 251 TTGAGTTTATATATAGTGATGGTTCTATGCTTTCTGCGAAAGTGAAGCAACACGCAATGG 310
Query 284 CACTCTATCGTGCGGCTGACAAATACGAGATTCTCCGACTACGAGAGCTATGCAGATCTG 343
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |
Sbjct 311 TACTCTATCGTGCGGCTGACAAATACGAGATTCTCCAACTACGTGACCTATGCAGATCCG 370
Query 344 AGCTTATATCTTCTCTGAATTCGACGAATTCTCTTAACCTTC-TTGAGCTCGCACAAATC 402
||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||| |
Sbjct 371 AGCTTATATCTTCTCTGAATTCGACGAATTCTCTTGA-CTTCATTGAGCTCGCCCAAACC 429
Query 403 CCTTTTGACAAAGTCCTCAACGATGCAGCCCTTAGTTATATTAAAACAAATGAACTTATG 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 430 CCTTTTGACAAAGTCCTCAACGATGCAGCCCTTAGTTATATTAAAACAAATGAATTTATG 489
Query 463 TTTCCTAGCTTTGATGAGTTCAAGTTGTTCGTTGATAATTACCCAAATCTTGCCGTGGAG 522
|| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 490 ATTGGTAGCTTTGATAAGTTCAAGCTGTTCGTTGATAATTACCCAAATCTTGCCGTGGAG 549
Query 523 GTAATGATGGCTTCTCTTACTCGGACTCCTAGTACAAGCTGTTCTAGGTGTGGTCTCATA 582
|||||||||||| |||| | | |||||||| ||||||||||| ||||||||||| |
Sbjct 550 ATAATGATGGCTTTTCTT-C-C----TCCTAGTAGAAGCTGTTCTAAGTGTGGTCTCAAA 603
Query 583 ACCTATCATAATCAGACTGGTACAAGCTGTTGTAGTTGTGGTTTTGACTATCCTCGTCGC 642
||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||
Sbjct 604 ACCTATCATAATCAGACTGGTACAAGCTGCTGTAACTGTGGTTTTGACTATCCTAGTAGC 663
Query 643 A 643
|
Sbjct 664 A 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5