BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05335.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319309 jgi|Araly1|319309|fgenesh1_pm.C_scaffold_3002325 424 2e-118
> Ahg319309 jgi|Araly1|319309|fgenesh1_pm.C_scaffold_3002325
Length=309
Score = 424 bits (229), Expect = 2e-118
Identities = 288/314 (92%), Gaps = 13/314 (4%)
Strand=Plus/Plus
Query 1 ATGAGATTTGCTAGTTTGTTTGTGGTTTATTGTACTTTCATGTTCCTCGA-CATAAGCCA 59
|||||||||||||||||||||||| ||| ||||| ||||||||||||| | ||||||||
Sbjct 1 ATGAGATTTGCTAGTTTGTTTGTGTTTTCTTGTATTTTCATGTTCCTC-ATTATAAGCCA 59
Query 60 TGTCAAATGTGAGGTGGAACCGGTGCCATATTGTAAAGTTAT-CACATGGTACGATGTTA 118
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 60 TGTCAAA---GAGGTGGAACCGGTGCCATATTGTAAAGTTATCCA-ATGGTACGATGTTA 115
Query 119 AATGTGGTGCTGATGGAAACAAGACGTGCGTAGACCACCTTATCAAAGGGCATATATATG 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AATGTGGTTCTGATGGAAACAAGACGTGCGTAGACCACCTTATCAAAGGGCATATATATG 175
Query 179 ACGTTCCTGTTTGTGATTGTAGTGAGTTGACGACATCA--G---G-AATTCTCTGCACAT 232
|||||||| |||||||||||||||| |||| |||| || | | ||||||||||||||
Sbjct 176 ACGTTCCTATTTGTGATTGTAGTGACTTGAAGACAACACCGTTTGGAATTCTCTGCACAT 235
Query 233 GTCAACACCGTTTTCCTTGTAAAGAGCCACCTCCGTTACATCGTATTTCCATCAGAAAAC 292
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 236 GTCAACACCGTTTTCCTTGTAAAGAGCCACCACCGTTACACCGTATTTCCATAAGAAAAC 295
Query 293 AAATCCGGGGATAA 306
|||| |||||||||
Sbjct 296 AAATACGGGGATAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5