BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G05380.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930849 jgi|Araly1|930849|scaffold_303306.1                        520    6e-147


> Ahg930849 jgi|Araly1|930849|scaffold_303306.1
Length=388

 Score =  520 bits (281),  Expect = 6e-147
 Identities = 356/392 (91%), Gaps = 5/392 (1%)
 Strand=Plus/Plus

Query  16   TAAGCAGTATTTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTTTGCAT  75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TAAGCAGTATTTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTTTGCAT  60

Query  76   TTCTTTTCATCGTCTCAGAAATGGCTGCCGCGGGCACGGTGAAGTCAGAGAGTGAGGAAA  135
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  61   TTCTTTTCATCGTCTCAGAAATGGCCGCAGCGGGCACGGTGAAGTCAGAGAGTGAGGAAA  120

Query  136  CTGTGAAACCTGAACAACATGGTGGTGGATTCGGTGACAATGGAGGAGGAAGATACCAag  195
            ||||| ||||||| |||||||||||| | | ||||||||||||| | |  | |  |  ||
Sbjct  121  CTGTGCAACCTGATCAACATGGTGGTCGCTACGGTGACAATGGA-G-GCTACA-GCGGAG  177

Query  196  gaggaggcggccatggtggccacggagggggaggataccaaggaggaggaggacga-tac  254
            | ||||| ||||  |||||||||||||| |||||||||||||||||||||||| ||  | 
Sbjct  178  GGGGAGGAGGCCGCGGTGGCCACGGAGGAGGAGGATACCAAGGAGGAGGAGGAGGAGGA-  236

Query  255  caaggaggcggtgggcgacaaggaggagggggaAGTTACTGCCGCCACGGCTGCTGCTAC  314
              ||| || ||||||||||  |||||||||||| ||||||||||||||||||||||||||
Sbjct  237  GGAGGGGGAGGTGGGCGACGCGGAGGAGGGGGAGGTTACTGCCGCCACGGCTGCTGCTAC  296

Query  315  AAAGGTTACCATGGCTGCTCAAGGTGTTGTTCATATGCCGGAGAAGCGGTTCAGACTCAG  374
            |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  297  AAAGGTTACCGTGGCTGCTCAAGGTGTTGTTCATACGCCGGAGAAGCTGTTCAGACTCAG  356

Query  375  TCTGGTCACTAAATCTACATAATATATCAACC  406
             |||||||||||||||||||||||||||||||
Sbjct  357  CCTGGTCACTAAATCTACATAATATATCAACC  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5