BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05400.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 828 0.0
Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327 800 0.0
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 784 0.0
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 303 2e-81
Ahg938815 jgi|Araly1|938815|scaffold_503006.1 231 8e-60
Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 196 3e-49
Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 108 1e-22
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 828 bits (448), Expect = 0.0
Identities = 747/888 (84%), Gaps = 34/888 (4%)
Strand=Plus/Plus
Query 304 GATAAATTGTTTTCTAATATTTTTCGTCTAATCTACGGTTTACA-GATAATATTCTTTGA 362
|||||||||||||||||| ||||||||| ||| || |||||||| ||||||||| ||| |
Sbjct 3 GATAAATTGTTTTCTAATTTTTTTCGTCCAATTTAGGGTTTACAGGATAATATTTTTTTA 62
Query 363 TTG-CTTTCTTTTGTTTTTGCTTGCAGGCGT-TGTCAGGCCTTCCCCAAGGGATATAATA 420
||| ||||| |||||||||||||||||||| | | |||||||||||||||||||| |||
Sbjct 63 TTGTTTTTCTATTGTTTTTGCTTGCAGGCGTAT-TAAGGCCTTCCCCAAGGGATATTATA 121
Query 421 AGGCTGATTATCTTTCTCTGTATCTCGACGTTCCTGATAAAGAATCTTTACCTATTGGAT 480
| |||| || ||||||||| | | ||||||||| ||||||||||||||||||||||||
Sbjct 122 ACAATGATAATATTTCTCTGTTTGTAGACGTTCCTCATAAAGAATCTTTACCTATTGGAT 181
Query 481 GAAGAAGCCACAC-AAAATTTTCTTTTACTTTAGTAAATAAAATTTCGGAAAAACTCTC- 538
| ||||| ||| | |||| ||||| | |||||||||||| || |||| |||||||||||
Sbjct 182 GGAGAAGACACGCTAAAA-TTTCTCTAACTTTAGTAAATCAATTTTCTGAAAAACTCTCT 240
Query 539 CAAACTTAAAGAGACTCAGCAGTGGTTTGATAAGAATGCT-CCTGA-CTGGGGGTTTAC- 595
| |||| ||||||| |||||||||||| || |||| | | || | |||||||||| |
Sbjct 241 C-AACTAAAAGAGAGACAGCAGTGGTTTAATCAGAA-GTTATCT-AGCTGGGGGTTT-CT 296
Query 596 AGAAATGA-TCAGC-CTCACTGAACTTCATGC-GGAAGAGGGACTTCTGAG-GAACGGAG 651
| |||| || | ||||||||||| ||||| ||| ||||| ||||| | ||| ||||
Sbjct 297 GGCTATGATTC--CTCTCACTGAACTGCATGCTAGAA-AGGGATTTCTG-GTGAATGGAG 352
Query 652 AACTCACCGTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAG 711
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 353 AACTCAAAGTTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGTTTCAC 412
Query 712 AGGAATC-TTCACCAGTAATTGAAACCATAGATGTCAATGGATTTCAAGTTCTTCCTTCA 770
||||||| || | ||||| | |||||| ||||||||||||| ||||||||||||||||||
Sbjct 413 AGGAATCGTT-ATCAGTAGTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCA 471
Query 771 CAGGTAGAATATGCGAAGTC-TTTATTTGAAAGACATCTAGATATTGCATCAAAATTCCG 829
|||||||||| || |||| | ||| ||||||| ||| | |||||||| |||||| || ||
Sbjct 472 CAGGTAGAATCTGTGAAG-CGTTTGTTTGAAAAACACCAAGATATTGTATCAAAGTTTCG 530
Query 830 TCCAAAGAATCCATACCTAAAGACGGCGTACATGAATGTCCTCTTGAGTTTAACCCAAAC 889
|| |||||||||||| | |||||||||| ||||||||||||| ||||||| | ||||||
Sbjct 531 TCTAAAGAATCCATATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAAAC 590
Query 890 GATATGTCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGCAGGCGCTGCATT 949
| | |||||||| |||||||||||||||||||||| ||||||||||||||| | |||| |
Sbjct 591 GTTGTGTCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACT 650
Query 950 GGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGGTTGGagaagaaacttaatgaagt 1009
|| |||||||| ||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 651 GGAATATTTGATTGAAACAGGGCTTAAGTTGGATTGGTTGGAGAAGAAACTTGGTGAAGT 710
Query 1010 aaaggaaaagaaaaagaaagaagaGGCTTGTTTGG-CCGAGATACAAGACATGGACGAAC 1068
|||||||||||| |||||||||||||| ||||| | ||| | ||| ||| ||||||||||
Sbjct 711 AAAGGAAAAGAAGAAGAAAGAAGAGGCGTGTTTAGTCCG-GCTACGAGAAATGGACGAAC 769
Query 1069 ATG-TTAAGCCATTGAAGAAGAAGTACTTAGACCTGGAAGCTCAGATA-GATAAGAAGAA 1126
| | || ||||||| ||||||| || ||||||| | |||| ||||||| | |||| ||||
Sbjct 770 A-GCTTCAGCCATTTAAGAAGAGGTGCTTAGACATTGAAGATCAGATAAG-TAAGGAGAA 827
Query 1127 GGCA-GAGTTGCTAGCTGCAAGAGCTCCTCTCTCCTTGAACGATGACA 1173
|| |||||| |||| || ||| |||||||| ||| |||||||||
Sbjct 828 A-CAAGAGTTGTTAGCAGCTAGAAAACCTCTCTCTTTGTACGATGACA 874
> Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327
Length=585
Score = 800 bits (433), Expect = 0.0
Identities = 519/560 (93%), Gaps = 7/560 (1%)
Strand=Plus/Plus
Query 628 AAGAGGGACTTCTGAGGAACGGAGAACTCACCGTTGTTGCCAAGGTAGAGGTTCTTGAAG 687
||| |||| |||||| ||| | |||||| | |||||||||||| |||||||||||||||
Sbjct 30 AAG-GGGATTTCTGATGAATGAAGAACTTATAGTTGTTGCCAAGATAGAGGTTCTTGAAG 88
Query 688 TTGTAGGAAAATTAGATGTATCAGAGGAATCTTCACCAGTAATTG-AAACCATAGATGTC 746
|||||||||| |||||||||||||| |||| ||||||||||| || ||||||||||||||
Sbjct 89 TTGTAGGAAATTTAGATGTATCAGAAGAATATTCACCAGTAA-TGAAAACCATAGATGTC 147
Query 747 AATGGATTTCAAGTTCTTCCTTCACAGGTAGAATATGCGAAGTCTTTATTTGAAAGACAT 806
||||| ||||||||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 148 AATGGGTTTCAAGTTCTTCGTTCACAGGAAGAATCTGTGAAGTCTTTATTTGAAAGACAT 207
Query 807 CTAGATATTGCATCAAAATTCCGTCCAAAGAATCCATACCTAAAGACGGCGTACATGAAT 866
||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 208 CTAAATATTGCATCAAAATTTCGTCCAAAGAATTCATACCTGAAGACGGCGTACATGAAT 267
Query 867 GTCCTCTTGAGTTTAACCCAAACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGAT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GTCCTCTTGAGTTTAACCCAAACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGAT 327
Query 927 CTCTCTGATGCAGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGG 986
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CTCTCTGATGCTGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGG 387
Query 987 TTGGagaagaaacttaatgaagtaaaggaaaagaaaaagaaagaagaGGCTTGTTTGGCC 1046
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTGGAGAAGAAACTTGATGAAGTAAAGGAAAAGAAAAAGAAAGAAGAGGCTTGTTTGGCC 447
Query 1047 -GAGATACAAGACATGGACGAACATG-TTAAGCCATTGAAGAAGAAGTACTTAGACCTGG 1104
| ||||||||| || |||||||| | || ||||||| ||||||| |||||||||||| |
Sbjct 448 CG-GATACAAGAAATCGACGAACA-GCTTCAGCCATTTAAGAAGACGTACTTAGACCTTG 505
Query 1105 AAGCTCAGATAGATAAGAAGAAGGCAGAGTTGCTAGCTGCAAGAGCTCCTCTCTCCTTGA 1164
||||||||||||||||| |||| | ||||||| |||| || |||||||||||||||||||
Sbjct 506 AAGCTCAGATAGATAAGGAGAAAGAAGAGTTGTTAGCAGCTAGAGCTCCTCTCTCCTTGA 565
Query 1165 ACGATGACAATGTTGTCTGA 1184
||||||||||||||||||||
Sbjct 566 ACGATGACAATGTTGTCTGA 585
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 784 bits (424), Expect = 0.0
Identities = 659/770 (86%), Gaps = 26/770 (3%)
Strand=Plus/Plus
Query 405 CCCAAGGGATATAATAAGGCTGATTATCTT-TCTCTGTATCT-CGACGTTCCTGATAAAG 462
||||||||||||||||||||| ||| | || ||||||||||| | | ||||| |||| |
Sbjct 124 CCCAAGGGATATAATAAGGCTAATTGT-TTGTCTCTGTATCTAC-ATGTTCCGGATATTG 181
Query 463 AATCTTTACCTATTGGATGAAGAAGCCACACAAAATTTTCTTTTACTTTAGTAAATAAAA 522
||||||| ||||||||||| |||| ||| | ||||||||| | || ||||||||| ||
Sbjct 182 AATCTTTGCCTATTGGATGGAGAATACACGCTAAATTTTCTCTAACATTAGTAAAT-CAA 240
Query 523 T-TTC-GGAAAAACTCTCCAAACTTAA-AGAGACTCAGCAGTGGTTTGATAAGAATGCTC 579
| ||| || ||||||||||||| ||| |||||||||||| ||||||||| |||| ||||
Sbjct 241 TATTCAGG-AAAACTCTCCAAA-ATAAGAGAGACTCAGCACTGGTTTGATCAGAAGGCTC 298
Query 580 CTGACTGGGGGTTTAC-AGAAATGATCAGCCTCACTGAACTTCATGCGGAAGAGGGACTT 638
|| ||||||||||| | ||||||||| | |||||||||||||||||| ||| |||| ||
Sbjct 299 CTAACTGGGGGTTT-CAAGAAATGATTACCCTCACTGAACTTCATGCCAAAGCGGGA-TT 356
Query 639 -CTGAG-GAACGGAGAACTCACCGTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAA 696
|| | ||| ||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 357 GGTG-GTGAATGGAGAACTCACAATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAA 415
Query 697 AATTAGATGTATCAGAGGAATCTTCACCAGTAATTGAAACCATAGATGTCAATGGATTTC 756
||||||||| ||||||||||||||| ||||| | ||||| ||||||||||||| ||||
Sbjct 416 AATTAGATGGCTCAGAGGAATCTTCATCAGTAGTGGAAACGGTAGATGTCAATGGCTTTC 475
Query 757 AAGTTCTTCCTTCACAGGTAGAAT-ATGCGAAGTCTTTA-TTTGAAAGACATCTAGATAT 814
|||||||||||||||||||||||| | | |||| |||| |||||||| || | |||| |
Sbjct 476 AAGTTCTTCCTTCACAGGTAGAATCA-GTGAAG-CTTTTGTTTGAAAGTCACCAAGATTT 533
Query 815 TGCATCAAAATTCCGTCCAAAGAATCCATACCTAAAGACGGCGTACATGAATGTCCTCTT 874
|||||||||||| |||| ||| |||||||| | |||||||| ||||||||||| |||||
Sbjct 534 TGCATCAAAATTTCGTCTAAATAATCCATATATGAAGACGGCATACATGAATGTTCTCTT 593
Query 875 GAGTTTAACCCAAACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGA 934
||| |||||||||||| |||| | ||| |||||||||||||||||||||| ||||| |||
Sbjct 594 GAGCTTAACCCAAACGCTATGCCGATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTGA 653
Query 935 TGCAGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGGTTGGagaa 994
||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 654 TGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAA 713
Query 995 gaaacttaatgaagtaaaggaaaagaaaaagaaagaagaGGCTTGTTTGGCC-GAGATAC 1053
||||||| |||||||||||||||||| |||||||||||||||||||||||| | | | |
Sbjct 714 GAAACTTGGTGAAGTAAAGGAAAAGAAGAAGAAAGAAGAGGCTTGTTTGGCCCG-GCTTC 772
Query 1054 AAGACATGGACGAACATGTTAAGCCATTGAAGAAGAAGTACTTAGACCTGGAAGCTC-AG 1112
| || ||||||||| | || ||||||| |||||||||| ||||||||| ||||||| |
Sbjct 773 ACGAAATGGACGAAAAACTTCAGCCATTTAAGAAGAAGTGCTTAGACCTTGAAGCTCTA- 831
Query 1113 ATAGATAAGAAGAAGGCAG-AGTTGCTAGCTGCAAGAGCTCCTCTCTCCT 1161
||||||||| |||||| || ||||| ||| || |||||||||||| |||
Sbjct 832 ATAGATAAGGAGAAGG-AGGAGTTGTTAGAAGCTAGAGCTCCTCTCCCCT 880
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 303 bits (164), Expect = 2e-81
Identities = 281/335 (84%), Gaps = 17/335 (5%)
Strand=Plus/Plus
Query 449 CGTTCCTGATAAAGAATCTTTACCTATTGGATGAAGAAGCCACACAAAATTTTCTTTTAC 508
|||| || |||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||
Sbjct 159 CGTTGCTAATAATGAATCTTTCCCTATTGGATGGAGAAGACACGCAAAATTTTCTTTTAC 218
Query 509 TTTAGTAAAT-AAAATTTCGGAAAAACTCTCCAAACTTA-AAGAG-A-CTCAGCAGTGGT 564
|||||||||| |||| || ||||| ||||||| ||| | || || | | || || ||||
Sbjct 219 TTTAGTAAATCAAAA-ATCAGAAAATCTCTCCATACTAAGAACAGAATCACAACACTGGT 277
Query 565 TTGATAAGAATG-CTCCTGA-CTGGGGGTTTAC-AGAAATGA-TCAGCCTCACTGAACTT 620
||||| |||| | || || | |||||||||| | ||| |||| || |||| ||||||||
Sbjct 278 TTGATCAGAA-GTCTACT-AGCTGGGGGTTT-CAAGACATGATTC-CCCTCTCTGAACTT 333
Query 621 CATGCGGAAGAGGGACTTCTGAG-GAACGGAGAACTCACCGTTGTTGCCAAGG-TAGAGG 678
||| | |||||||| ||||| | ||| |||||||||| ||||||||| ||| |||| |
Sbjct 334 CATACCAAAGAGGGATTTCTG-GTGAATGGAGAACTCATTGTTGTTGCC-AGGATAGATG 391
Query 679 TTCTTGAAGTTGTAGGAAAATTAGATGTATCAGAGGAATCTTCACCAGTAATTGAAACCA 738
|||||||||||||||||||||||||||| ||| ||| ||||||| ||||| | ||||||
Sbjct 392 TTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGTATCTTCATCAGTACTGGAAACCG 451
Query 739 TAGATGTCAATGGATTTCAAGTTCTTCCTTCACAG 773
||||||||||||| |||||||||||||||||||||
Sbjct 452 TAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
> Ahg938815 jgi|Araly1|938815|scaffold_503006.1
Length=1055
Score = 231 bits (125), Expect = 8e-60
Identities = 227/275 (83%), Gaps = 12/275 (4%)
Strand=Plus/Plus
Query 880 TAACCCA-AACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGCA 938
||||||| || | |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 49 TAACCCATAA-GCTATGCCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGTA 107
Query 939 GGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGT-TGGATTGGTTGGagaagaa 997
| | |||| || |||| ||| ||| ||||||||| | | |||| ||||||||||||||
Sbjct 108 GACATTGCACTGACATACATGACAGATGCAGGGTTTAA-TATGGACTGGTTGGAGAAGAA 166
Query 998 actta-atgaagtaaaggaaaagaaaaagaaagaagaGGCTTGTTTGGC-CGAGATACAA 1055
| || | |||||||||||||||||| ||||||| || ||||||||| | || | | |||
Sbjct 167 A-TTGGAGGAAGTAAAGGAAAAGAAAGAGAAAGAGGAAGCTTGTTTGACTCG-GCTGCAA 224
Query 1056 GACATGGACGAA-C-ATGTTAAGCCATTGAAGAAGAAGTACTTAGACCTGGAAGCTCAGA 1113
|| ||||| ||| | || | ||||| |||||| || ||| |||| | | |||||| |||
Sbjct 225 GAAATGGAGGAATCGAT-T-AAGCCCTTGAAGCAGGAGTTCTTAAAGCAAGAAGCTGAGA 282
Query 1114 TAGATAAGAAGAAGGCAGAGTTGCTAGCTGCAAGA 1148
|||||||| |||||||||||||| | |||||||||
Sbjct 283 TAGATAAGGAGAAGGCAGAGTTGTTGGCTGCAAGA 317
> Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598
Length=828
Score = 196 bits (106), Expect = 3e-49
Identities = 291/377 (77%), Gaps = 26/377 (7%)
Strand=Plus/Plus
Query 637 TTCTGAG-GAACGGAGAACTCACCG-TTGTTGCCAAGGTAGAG-GTTCTTGAAGTTGTAG 693
||||| | ||| |||||| ||| | |||||||| |||| | | |||||||||||||| |
Sbjct 362 TTCTG-GTGAATGGAGAAATCA-AGATTGTTGCCGAGGTTG-GTGTTCTTGAAGTTGTTG 418
Query 694 GAAAATTAGATGTATCAGAGGAATCTTCACCAGTAATTGAAACCATAGATGTCAATGGAT 753
| || | |||||| | ||||||| ||||| ||||| ||||| ||| ||||||||||| |
Sbjct 419 GCAAGTCAGATGTGTTAGAGGAAACTTCATTAGTAAATGAAAGCATCGATGTCAATGGGT 478
Query 754 TTCAAGTTCTTCCTTCACAGGTAGAATATGCGAAG--TCTTTATT-TGAAAGACATCTAG 810
||||||||||||||||||||||||||| || |||| ||||| || | |||| || | ||
Sbjct 479 TTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGAGTCTTT-TTAT-AAAG-CACCCAG 535
Query 811 ATATTGCATCAAAATTCCGTCCAAAGAATCCATACCTAAAGA-CGGCGTACATGAAT-GT 868
| ||||||||| |||||||||||||||| ||| |||| | || | || ||| ||||| |
Sbjct 536 ACATTGCATCACAATTCCGTCCAAAGAACCCACACCTGA-GAACAGCATACTTGAATAG- 593
Query 869 CCT-CTTGAGTTTAACCCAAACGATATGT-C-AATCTCCTCAAG-AACTCTCCAATGATG 924
| | || || || | | | | | ||| | |||| || | || |||||||||||| ||
Sbjct 594 CATACTA-AGCTTGTCAGAGA-G-TCTGTGCCAATCCCC-CGAGGAACTCTCCAATGCTG 649
Query 925 ATCTCTCTGATGCAGGC-GCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGAT 983
|||| || ||||| | | | || | | | | ||| | |||| |||||| | ||||||
Sbjct 650 ATCTGGCTAATGCATACTG-TACACTAACTTGTGTGACAAAAGCGGGGTTTAAATTGGAT 708
Query 984 TGGTTGGagaagaaact 1000
|||||||| ||||||||
Sbjct 709 TGGTTGGAAAAGAAACT 725
> Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754
Length=918
Score = 108 bits (58), Expect = 1e-22
Identities = 239/324 (74%), Gaps = 22/324 (7%)
Strand=Plus/Plus
Query 732 GAAACCATAGATGTCAATGGATTTCAAGTTCTTCCTTCACAGGTAGAATATGCGAAGTC- 790
|||| ||| | ||| ||||| |||||||||||||||||||||||||||| || || | |
Sbjct 493 GAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-GCCG 551
Query 791 T-TTATTTGAAA-GACATCTAGATATTGCA-TCAAAATTCC--GTCCAAAGAATCCATAC 845
| || ||||||| | || | ||| |||||| | | |||| || |||||| ||| ||
Sbjct 552 TATT-TTTGAAAAG-CACCCAGAGATTGCAGT-AGGGTTCCAAGT--AAAGAA-CCA-AC 604
Query 846 --CTAAAGACGGCGTACATGAATGTCCTCTTGAGTTTAACCCAAACGATATGTCAATCTC 903
|| | || | | ||||||| |||| | | ||| | ||| | ||||||||||
Sbjct 605 ATCTGAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTC 664
Query 904 CTCAAGAACTCTCCAATGATGATCTCTCTG-ATGCAGGCGCTGCATTGGCATATTTGAGA 962
||| || ||||| ||||| ||||| | || | | || | |||| || ||||||||| |
Sbjct 665 TTCAGGAGCTCTCAAATGAAGATCT-TGTGGAAGTAGACATTGCACTGACATATTTGAAA 723
Query 963 GAAGCAGGG-TTTGAGTTGGATTGGTTGGagaagaaacttaatgaagt-aaaggaaaaga 1020
|| || ||| ||| || |||||||||| |||||||| || | |||| |||| ||||||
Sbjct 724 GATGC-GGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAG-AAAAGA 781
Query 1021 aaaagaaagaagaGGCTTGTTTGG 1044
| |||||||| | || ||||||
Sbjct 782 AGGAGAAAGAACAATCTGGTTTGG 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5