BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05410.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 996 0.0
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 747 0.0
Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327 673 0.0
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 294 8e-79
Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 204 1e-51
Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 174 1e-42
Ahg938811 jgi|Araly1|938811|scaffold_503002.1 150 2e-35
Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 148 6e-35
Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 137 1e-31
Ahg930958 jgi|Araly1|930958|scaffold_303415.1 121 1e-26
Ahg924373 jgi|Araly1|924373|scaffold_105654.1 100 2e-20
Ahg937123 jgi|Araly1|937123|scaffold_501314.1 75.0 1e-12
Ahg937127 jgi|Araly1|937127|scaffold_501318.1 73.1 4e-12
Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 71.3 1e-11
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 996 bits (539), Expect = 0.0
Identities = 727/815 (89%), Gaps = 23/815 (3%)
Strand=Plus/Plus
Query 276 AGGCGTATTATGGCCTACCCCAAGGGA-ATTAACAAAGCTCATGATAGTTTTTCTCTGTT 334
|||||||||| ||||| |||||||||| ||| | || | |||||| | ||||||||||
Sbjct 88 AGGCGTATTAAGGCCTTCCCCAAGGGATATT-A-TAA-C-AATGATAATATTTCTCTGTT 143
Query 335 TCTAAACGTTCCTGATAACGAATCTTTACCTACTGGATGGCGAAGACACGCTAAAGTTTC 394
| || |||||||| |||| ||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 144 TGTAGACGTTCCTCATAAAGAATCTTTACCTATTGGATGGAGAAGACACGCTAAAATTTC 203
Query 395 TTTTAGTTTAGTAAATCAAGGTTCAGAAAAACTCTCTCAACGAAAAGTGACTCAGCACTG 454
| | | ||||||||||||| ||| |||||||||||||||| ||||| || ||||| ||
Sbjct 204 TCTAACTTTAGTAAATCAATTTTCTGAAAAACTCTCTCAACTAAAAGAGAGACAGCAGTG 263
Query 455 GTTTGTTCAAAAGGCTT-T-TACCTGGGGGTTTCCAG-TAATGATTACC-CACACCGAAC 510
|||| ||| || | || | || ||||||||||| | | |||||| || | ||| ||||
Sbjct 264 GTTTAATCAGAA-G-TTATCTAGCTGGGGGTTTCTGGCT-ATGATT-CCTCTCACTGAAC 319
Query 511 TTAACGCCA-AAATGGGATTTCTGGTAAATGGAGAACTCAAAGTTGTTGCTAAGATAGAG 569
| | || | ||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 320 TGCATGCTAGAAA-GGGATTTCTGGTGAATGGAGAACTCAAAGTTGTTGCCAAGATAGAT 378
Query 570 GTTCTTGAAGTTGTAGGGAAATTAGATGTATCAAAGGAATC-TTCACCAATAATGAAAAC 628
||||||||||||||||| ||||||||||| ||| ||||||| || | || || || ||||
Sbjct 379 GTTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGAATCGTT-ATCAGTAGTGGAAAC 437
Query 629 CATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTTTGTT 688
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 438 CGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTTTGTT 497
Query 689 TGaaaaaaaCCTAGATATTGTATCAAAATTTCGTCTTAAA-AATCCATATTTGAAGACTG 747
||||||| ||| ||||||||||||||| ||||||| |||| ||||||||||||||||| |
Sbjct 498 TGAAAAACACCAAGATATTGTATCAAAGTTTCGTC-TAAAGAATCCATATTTGAAGACGG 556
Query 748 CGTGCATGAATCTCCTCCTGAGTTT-AACCGAAACGCTGTGTCAATCGCCTCAAGAACTC 806
||||||||||| ||||||||||||| | || ||||| |||||||||||||||||||||||
Sbjct 557 CGTGCATGAATGTCCTCCTGAGTTTGATCC-AAACGTTGTGTCAATCGCCTCAAGAACTC 615
Query 807 TCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGCATATTTGATAGAAACAGGGCTT 866
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 616 TCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTGATTGAAACAGGGCTT 675
Query 867 AAGTTGGATTGGTTGGagaagaaacttgatgaattaaaggaaaagaagaagaaagaagaG 926
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 676 AAGTTGGATTGGTTGGAGAAGAAACTTGGTGAAGTAAAGGAAAAGAAGAAGAAAGAAGAG 735
Query 927 TCTTGTTTGGTCCGGCTGA-GAGAAATGGACGAACAGCTTCAGCCATTTAAGAAGAGGTG 985
| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GCGTGTTTAGTCCGGCT-ACGAGAAATGGACGAACAGCTTCAGCCATTTAAGAAGAGGTG 794
Query 986 CTTAGACATTGAAGATCAGATAAGTAAGGAGAAAGAAGAGTTGTTAGCAGCTAGAGAACC 1045
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 795 CTTAGACATTGAAGATCAGATAAGTAAGGAGAAACAAGAGTTGTTAGCAGCTAGAAAACC 854
Query 1046 TCTCTCTTTGTACGATGACATTGACAATAATGTCT 1080
||||||||||||||||||||||||||||| |||||
Sbjct 855 TCTCTCTTTGTACGATGACATTGACAATATTGTCT 889
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 747 bits (404), Expect = 0.0
Identities = 649/767 (85%), Gaps = 17/767 (2%)
Strand=Plus/Plus
Query 290 CTACCCCAAGGGAAT-TAACAAAGCTCATGATAGTTTTTCTCTGTTTCTAAACGTTCCTG 348
||| |||||||| || ||| || ||| | || |||| ||||||| |||| | ||||| |
Sbjct 120 CTATCCCAAGGG-ATATAATAAGGCT-A--ATTGTTTGTCTCTGTATCTACATGTTCCGG 175
Query 349 ATAACGAATCTTTACCTACTGGATGGCGAAGACACGCTAAAGTTTCTTTTAGTTTAGTAA 408
||| |||||||| |||| ||||||| ||| |||||||||| ||||| | | |||||||
Sbjct 176 ATATTGAATCTTTGCCTATTGGATGGAGAATACACGCTAAATTTTCTCTAACATTAGTAA 235
Query 409 ATCAAGGTTCAGAAAAACTCTCTC-AACGAAAAGTGACTCAGCACTGGTTTGTTCAAAAG 467
||||| ||||| ||||||||| | || || || ||||||||||||||||| ||| |||
Sbjct 236 ATCAATATTCAGGAAAACTCTC-CAAAATAAGAGAGACTCAGCACTGGTTTGATCAGAAG 294
Query 468 GCTTTTACCTGGGGGTTTCCAGTAATGATTACCCACACCGAACTTAACGCCAAAATGGGA 527
||| || ||||||||||| || ||||||||||| ||| |||||| | |||||| ||||
Sbjct 295 GCTCCTAACTGGGGGTTTCAAGAAATGATTACCCTCACTGAACTTCATGCCAAAGCGGGA 354
Query 528 TTTCTGGTAAATGGAGAACTCA-AAGTTGTTGCTAAGATAGAGGTTCTTGAAGTTGTAGG 586
|| |||| ||||||||||||| || ||||||| |||||||| |||||||||||||||||
Sbjct 355 TTGGTGGTGAATGGAGAACTCACAA-TTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGG 413
Query 587 GAAATTAGATGTATCAAAGGAATCTTCACCAATAATGAAAACCATAGATGTCAATGGGTT 646
|||||||||| ||| ||||||||||| || || || |||| ||||||||||||| ||
Sbjct 414 AAAATTAGATGGCTCAGAGGAATCTTCATCAGTAGTGGAAACGGTAGATGTCAATGGCTT 473
Query 647 TCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTTTGTTTGaaaaaaaCCTAGATAT 706
|||||||||||||||||||||||| || ||||||| ||||||||||| ||| |||| |
Sbjct 474 TCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTTTGTTTGAAAGTCACCAAGATTT 533
Query 707 TGTATCAAAATTTCGTCTTAAA-AATCCATATTTGAAGACTGCGTGCATGAATCTCCTCC 765
|| |||||||||||||| |||| ||||||||| ||||||| || | ||||||| | |||
Sbjct 534 TGCATCAAAATTTCGTC-TAAATAATCCATATATGAAGACGGCATACATGAATGTTCTCT 592
Query 766 TGAGTTTAACCGAAACGCTGTGTCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTG 825
|||| |||||| ||||||| || | |||||||||||||||||||||||||||||||| ||
Sbjct 593 TGAGCTTAACCCAAACGCTATGCCGATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTG 652
Query 826 ATGCAGGTGTTGCACTGGCATATTTGATAGAAACAGGGCTTAAGTTGGATTGGTTGGaga 885
|||| || | ||||||| ||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 653 ATGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGA 712
Query 886 agaaacttgatgaattaaaggaaaagaagaagaaagaagaGTCTTGTTTGGTCCGGCTG- 944
||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 713 AGAAACTTGGTGAAGTAAAGGAAAAGAAGAAGAAAGAAGAGGCTTGTTTGGCCCGGCTTC 772
Query 945 AGAGAAATGGACGAACAGCTTCAGCCATTTAAGAAGAGGTGCTTAGACATTGAAGATC-A 1003
| |||||||||||| | ||||||||||||||||||| |||||||||| |||||| || |
Sbjct 773 AC-GAAATGGACGAAAAACTTCAGCCATTTAAGAAGAAGTGCTTAGACCTTGAAGCTCTA 831
Query 1004 GATA-AGTAAGGAGAAAGAAGAGTTGTTAGCAGCTAGAGAACCTCTC 1049
||| | ||||||||| || |||||||||| |||||||| ||||||
Sbjct 832 -ATAGA-TAAGGAGAAGGAGGAGTTGTTAGAAGCTAGAGCTCCTCTC 876
> Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327
Length=585
Score = 673 bits (364), Expect = 0.0
Identities = 510/580 (88%), Gaps = 12/580 (2%)
Strand=Plus/Plus
Query 492 ATGATTACCCACACCGAACTTAACGCCAAAATGGGATTTCTGGTAAATGGAGAACTCAAA 551
|||||||||| | ||||||||||| ||||| |||||||||| | |||| |||||| | |
Sbjct 1 ATGATTACCCTCGCCGAACTTAACAACAAAAGGGGATTTCTGATGAATGAAGAACTTATA 60
Query 552 GTTGTTGCTAAGATAGAGGTTCTTGAAGTTGTAGGGAAA-TTAGATGTATCA-AAGGAAT 609
|||||||| |||||||||||||||||||||||| ||||| |||||||||||| || ||||
Sbjct 61 GTTGTTGCCAAGATAGAGGTTCTTGAAGTTGTA-GGAAATTTAGATGTATCAGAA-GAAT 118
Query 610 CTTCACCAATAATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 669
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 119 ATTCACCAGTAATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTCGTTCACAGGAAG 178
Query 670 ATTCTGTGAAG-CGTTTGTTTGaaaaaaaCCTAGATATTGTATCAAAATTTCGTCTTAAA 728
| ||||||||| | ||| ||||||| | | ||| |||||| |||||||||||||| |||
Sbjct 179 AATCTGTGAAGTC-TTTATTTGAAAGACATCTAAATATTGCATCAAAATTTCGTCC-AAA 236
Query 729 -AATCCATATTTGAAGACTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACGCTGTG 787
||| |||| ||||||| |||| ||||||| ||||| ||||||||||| ||||| | ||
Sbjct 237 GAATTCATACCTGAAGACGGCGTACATGAATGTCCTCTTGAGTTTAACCCAAACGATATG 296
Query 788 TCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGCATA 847
|||||| |||||||||||||||||||||| |||||||||||| || | |||| |||||||
Sbjct 297 TCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGCTGGCGCTGCATTGGCATA 356
Query 848 TTTGATAGAAACAGGGCTTAAGTTGGATTGGTTGGagaagaaacttgatgaattaaagga 907
||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 357 TTTGAGAGAAGCAGGGTTTGAGTTGGATTGGTTGGAGAAGAAACTTGATGAAGTAAAGGA 416
Query 908 aaagaagaagaaagaagaGTCTTGTTTGGTCCGGCTGAGA-GAAATGGACGAACAGCTTC 966
|||||| |||||||||||| ||||||||| |||| | | | ||||| |||||||||||||
Sbjct 417 AAAGAAAAAGAAAGAAGAGGCTTGTTTGGCCCGGAT-ACAAGAAATCGACGAACAGCTTC 475
Query 967 AGCCATTTAAGAAGAGGTGCTTAGACATTGAAGATCAGATA-AGTAAGGAGAAAGAAGAG 1025
||||||||||||||| || ||||||| |||||| ||||||| | ||||||||||||||||
Sbjct 476 AGCCATTTAAGAAGACGTACTTAGACCTTGAAGCTCAGATAGA-TAAGGAGAAAGAAGAG 534
Query 1026 TTGTTAGCAGCTAGAGAACCTCTCTCTTTGTACGATGACA 1065
|||||||||||||||| |||||||| ||| |||||||||
Sbjct 535 TTGTTAGCAGCTAGAGCTCCTCTCTCCTTGAACGATGACA 574
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 294 bits (159), Expect = 8e-79
Identities = 278/335 (83%), Gaps = 9/335 (3%)
Strand=Plus/Plus
Query 337 TAAACGTTCCTGATAACGAATCTTTACCTACTGGATGGCGAAGACACGCTAAAGTTTCTT 396
||| |||| || |||| |||||||| |||| ||||||| |||||||||| ||| ||||||
Sbjct 155 TAATCGTTGCTAATAATGAATCTTTCCCTATTGGATGGAGAAGACACGCAAAATTTTCTT 214
Query 397 TTAGTTTAGTAAATCAAGGTTCAGAAAAACTCTCTCA-ACGAA-AAGTG-A-CTCAGCAC 452
||| ||||||||||||| |||||||| ||||| || || || || | | | || |||
Sbjct 215 TTACTTTAGTAAATCAAAAATCAGAAAATCTCTC-CATACTAAGAACAGAATCACAACAC 273
Query 453 TGGTTTGTTCAAAAGGCTTTTACCTGGGGGTTTCCAGTA-ATGATTACCCACACCGAACT 511
||||||| ||| ||| || || ||||||||||| || | |||||| ||| | | |||||
Sbjct 274 TGGTTTGATCAGAAGTCTACTAGCTGGGGGTTTCAAG-ACATGATTCCCCTCTCTGAACT 332
Query 512 TAACGCCAAA-ATGGGATTTCTGGTAAATGGAGAACTCAAAGTTGTTGCTAAGATAGAGG 570
| | ||||| | |||||||||||| ||||||||||||| |||||||| | |||||| |
Sbjct 333 TCATACCAAAGA-GGGATTTCTGGTGAATGGAGAACTCATTGTTGTTGCCAGGATAGATG 391
Query 571 TTCTTGAAGTTGTAGGGAAATTAGATGTATCAAAGGAATCTTCACCAATAATGAAAACCA 630
|||||||||||||||| ||||||||||| ||| ||| ||||||| || || || |||||
Sbjct 392 TTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGTATCTTCATCAGTACTGGAAACCG 451
Query 631 TAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 665
|||||||||||||||||||||||||||||||||||
Sbjct 452 TAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
Score = 104 bits (56), Expect = 1e-21
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 114 ATACGACGATTACTTGGGTGATTAAAAATTTCTCTTCTTTGCAATCTGCACCAATTTATT 173
||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||| | |
Sbjct 20 ATAAGACGATTACTTGGGTGATTAAAAATTTCTCCTCTTTGCCATCTGCATCAATTCAAT 79
Query 174 CCGA-CATATTCGTTGTTGGTGGCTGC 199
| || || ||||||||||||||| |||
Sbjct 80 CTGATCA-ATTCGTTGTTGGTGGTTGC 105
> Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598
Length=828
Score = 204 bits (110), Expect = 1e-51
Identities = 472/641 (74%), Gaps = 47/641 (7%)
Strand=Plus/Plus
Query 277 GGCGTATTATGGCCTACCCCAAGGGA-ATTAACAAAG-C-TCATGATAGTTTTTCTCTGT 333
||||| || ||||||| ||||||||| || | || | | || | ||||| |||||||
Sbjct 107 GGCGTCTTGTGGCCTATCCCAAGGGACATGGGGATAGTCTTAATAAAAGTTTGTCTCTGT 166
Query 334 TTCTAAAC-GTTCCTGATAAC-GAATCTTTACC-TACTGGATGGCGAAGACACGCTAAAG 390
|||| | ||| ||||| | |||||||| || || ||| ||| |||| || | ||||
Sbjct 167 TTCT-GGCTGTTGCTGAT-TCTGAATCTTTGCCTTA-TGGTTGGAAAAGAGACAC-AAAG 222
Query 391 TTTC-TTTTAGT-TTAGTAAATCAAGGTTCAGAAAAACTCTCTCAACGA-AAAGTGACTC 447
| || | | || || |||||| ||| || |||||||| |||| | |||| ||
Sbjct 223 TATCGCCAAACTGTT-GTTAATCAAACTTCGGAGAAACTCTCCCAAC-AGAAAG-GA--A 277
Query 448 AGCACTGGTTTGTTCA-AAAGGCTTTTACCTGGGGGTTTCCAGT-AATGATTACCCACAC 505
| | ||||||| ||| || | | | | || |||||||||| | |||| || ||| ||
Sbjct 278 AACCCTGGTTTAATCAGAATTG-TGTCAGCT-GGGGTTTCCAATCAATGGTTCCCCTTAC 335
Query 506 CGAACTTAACGCCA-AAAT-G-GGATTTCTGGTAAATGGAGAACTCAAAG-TTGTTGCTA 561
||||||| | || |||| | || |||||||| ||||||||| || ||| |||||||
Sbjct 336 CGAACTTCTTGACATAAATGGTGGGTTTCTGGTGAATGGAGAAATC-AAGATTGTTGCCG 394
Query 562 AGATAGAG-GTTCTTGAAGTTGTAGGGAAATTAGATGTATCAAAGGAATCTTCACCAAT- 619
|| | | | |||||||||||||| || || | |||||| | | ||||| ||||| | |
Sbjct 395 AGGTTG-GTGTTCTTGAAGTTGTTGGCAAGTCAGATGTGTTAGAGGAAACTTCATTAGTA 453
Query 620 AATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAA 679
|||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 454 AATG-AAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA 512
Query 680 GCGT-TTGTTTGaaaaaa-aCCTAGATATTGTATCAAAATTTCGTCTTAAA-AATCCATA 736
| || || ||| | ||| ||| ||| |||| |||| |||| |||| ||| || ||| |
Sbjct 513 GAGTCTT-TTT-ATAAAGCACCCAGACATTGCATCACAATTCCGTCC-AAAGAACCCACA 569
Query 737 TTTGAAGA-CTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACG-CTGTGTCAATCG 794
||| || | || | | ||||| | | || || || | || | | ||||| |||||
Sbjct 570 CCTGA-GAACAGCATACTTGAATAGCATACTAAGCTTGTCAGAGA-GTCTGTGCCAATCC 627
Query 795 CCTCAAG-AACTCTCCAATGATGGTCTCTCTGATGCAGG-TGTTGCACTGGCATATTTGA 852
|| | || |||||||||||| || ||| || ||||| ||| |||| | | | |||
Sbjct 628 CC-CGAGGAACTCTCCAATGCTGATCTGGCTAATGCATACTGTA-CACTAACTTGTGTGA 685
Query 853 TAGAAA-CAGGGCTTAAGTTGGATTGGTTGGagaagaaact 892
| ||| | ||| |||| |||||||||||||| ||||||||
Sbjct 686 CA-AAAGCGGGGTTTAAATTGGATTGGTTGGAAAAGAAACT 725
> Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133
Length=849
Score = 174 bits (94), Expect = 1e-42
Identities = 468/643 (73%), Gaps = 48/643 (7%)
Strand=Plus/Plus
Query 277 GGCGTATTATGGCCTACCCCAAGGG-AATTAACAAAG--CTCATGATAGTTTTTCTCTGT 333
||||| || ||||||| |||||||| ||| | | | | || | |||||||||||||
Sbjct 107 GGCGTCTTCTGGCCTATCCCAAGGGAAATGGAGATGGTTTTAATAAAAGTTTTTCTCTGT 166
Query 334 TTCTAAAC-GTTCCTGATAAC-GAATCTTTACCTACTGGATGGCGAAGACACGCT-AAAG 390
|||| | ||| ||||| | |||||||| |||| ||| ||| ||||||| | |||
Sbjct 167 TTCT-GGCTGTTGCTGAT-TCTGAATCTTTGCCTAATGGTTGGAAAAGACAC-ATCAAA- 222
Query 391 TTTC-TTTTAGT-TTAGTAAATC-AAGGTTCAGAAAAACTCTCTCAAC--GAA-AAGTGA 444
| || | | | | || || |||| || | || || ||||| ||| ||| ||| || | |
Sbjct 223 TATCGTCTAACTGTT-GTTAATCAAATG-TCGGAGAAACTTTCTAAACAGGAAGAA-TTA 279
Query 445 CTCAGCACTGGTTTGTTCAAAAGGCTTTTACCTGGGGGTTTCCAGTAATGATTACCCACA 504
| | | |||||||| ||| || || ||| |||||| | |||| |||| || ||| |
Sbjct 280 C-AATC-CTGGTTTGATCAGAATTCTCTTAGCTGGGGCTACCCAGCAATGCTTCCCCTTA 337
Query 505 CCGAACTTAACG-CCAAAATG--GGATTTCTGGTAAATGGAGAACTCAAAGTTGTTGCTA 561
|| ||||| | | |||||| || |||||||| ||||||||| |||| ||||||||
Sbjct 338 CCAAACTTGTTGACGAAAATGATGGGTTTCTGGTGAATGGAGAAGTCAAGGTTGTTGCCG 397
Query 562 AGATAGAG-GTTCTTGAAGTTGTAGGGAAATTAGATGTATCAAAGGAATCTTCACCA-AT 619
|| | | | |||||||||||||| || |||| |||||| | | |||| ||| | | |
Sbjct 398 AGGTTG-GTGTTCTTGAAGTTGTTGGCAAATCAGATGTGTTAGTGGAAACTTTATTAGTT 456
Query 620 AATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAA 679
| | ||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 457 CA-GGAAAGCATCGATGTCAATGGGTTTCAAGTTCTTCCTTCTCAGGTAGACTCTGTGAA 515
Query 680 GCGTT-TGTTTGaaaaaa-aCCTAGATATTGTATCAAAATT-TCGTCTTAAAAATCCATA 736
| | | ||| ||||| ||| ||| |||| ||||||||| | |||| | || ||| |
Sbjct 516 -CAATCTCTTT-AAAAATTACCCAGACATTGCATCAAAATTCT-GTCTGGAGAA-CCA-A 570
Query 737 -TT-TGA-AGACTGCGTGCATGAATCTCCTCCTGA-GTTTAACCGAAACGCTGTGTCAAT 792
|| ||| || | | | ||||||| ||| || | | || || || | ||| | || |
Sbjct 571 CTTCTGAGAG-CAACATACATGAATAGCCTACT-ATGCTTGACTGAGATTCTGAGCCAGT 628
Query 793 CGCCTCAAGAA-CTCTCCAATGATGGTCTCTCTGATGCAGGT-GTTGCACTGGCATATTT 850
| ||| | ||| ||||| | || || |||| | ||||| | || |||| | | | |
Sbjct 629 CCCCTGA-GAAACTCTCTAGTGTTGATCTCGCCAATGCACATTGTA-CACTATCTTCTCT 686
Query 851 GATAGAAA-CAGGGCTTAAGTTGGATTGGTTGGagaagaaact 892
|| | ||| | || ||||||||||||||||||||||||||||
Sbjct 687 GACA-AAAGCCGGTTTTAAGTTGGATTGGTTGGAGAAGAAACT 728
> Ahg938811 jgi|Araly1|938811|scaffold_503002.1
Length=1099
Score = 150 bits (81), Expect = 2e-35
Identities = 230/299 (77%), Gaps = 22/299 (7%)
Strand=Plus/Plus
Query 633 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGC-GT-TTGTTTG 690
||||||||||||||||||||||||||||||||||| | || ||||| || || || ||||
Sbjct 651 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGA-GCCGTATT-TTTG 708
Query 691 aaaaaaaCCTAGATATTGTATCAAAATTTCGT-CTTAAA-AATCCAT-ATTTGAAGA-C- 745
||||| ||| ||| | || |||| ||| ||| | ||| || ||| || ||| || |
Sbjct 709 AAAAACACCCAGAGACTGCATCAGAATGCCGTAC--AAAGAA-CCAAGATCTGA-GAACA 764
Query 746 TGCGTGCATGAATCTCCTCCTGAGTTTAACCGAA-ACGCTGTGTCAATCG-CCTCAAGAA 803
| | | ||||||| ||||| | || ||| | || | ||| | |||| | ||| | |||
Sbjct 765 T-CATACATGAATGTCCTCATAAGCGTAATC-AAGATGCTCT-TCAAAGGACCTGAGGAA 821
Query 804 CTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGCATATTTGATAGAAACAGGG 863
| |||||| |||| ||| |||||||||| | ||| |||||||| ||| | | ||||
Sbjct 822 CACTCCAAGGATGATCTGTCTGATGCAGAAGCTGCTCTGGCATACATGACACATGTAGGG 881
Query 864 CTTAAGTTGGATTGGTTGGagaaga-aacttgatgaattaaaggaaaagaa-gaagaaa 920
|||||||||||||||||||||| | ||| ||| ||| |||| |||| ||| |||||||
Sbjct 882 TTTAAGTTGGATTGGTTGGAGAA-ACAACATGAAGAAGTAAAAGAAA-GAATGAAGAAA 938
> Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854
Length=1308
Score = 148 bits (80), Expect = 6e-35
Identities = 230/300 (77%), Gaps = 20/300 (7%)
Strand=Plus/Plus
Query 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGT-AGATTCTGTGAAGC-G 682
||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||||| || |
Sbjct 863 AAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTGAAATT-TGTGA-GCCG 920
Query 683 T-TTGTTTGaaaaaaaCCTAGATATTGTA-TCAAAATTTCGT-CTTAAA-AATCCAT-AT 737
| || ||||||||| ||| ||| |||| | | | ||| | | | ||| || ||| ||
Sbjct 921 TATT-TTTGAAAAATACCCAGACATTGCAGT-AGGATTCCATGC--AAAGAA-CCAACAT 975
Query 738 -TTGAAGACTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACGCTGTGTCAATCGCC 796
|| ||||| || ||||||||| ||||||| || ||| ||| || |||||||| || ||
Sbjct 976 CTT-AAGACAGCATGCATGAATGTCCTCCTCAGCCTAATCGAGACACTGTGTCAGTCACC 1034
Query 797 TCAAGAACTCTCCAATGATGGTCTCTCTG-ATGCAGGTGTTGCACTGGCATATTTGATAG 855
||| || ||||| ||||| | | | || | |||| ||| || ||||| ||| ||
Sbjct 1035 TCAGGAGCTCTCAAATGAAGATATGG-TGGAAGCAGACAATGCTCTAACATATGTGAAAG 1093
Query 856 AAACAGGGCTT-AAGTTGGATTGGTTGGagaagaaacttgatgaattaaaggaaaagaag 914
| | |||||| ||| ||||||||||||||| ||| || || ||| |||| |||||||||
Sbjct 1094 ATGC-GGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTGGAGGAAGTAAAAGAAAAGAAG 1152
> Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754
Length=918
Score = 137 bits (74), Expect = 1e-31
Identities = 242/322 (75%), Gaps = 16/322 (5%)
Strand=Plus/Plus
Query 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGC-GT 683
||| ||| | ||| |||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 494 AAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-GCCGT 552
Query 684 -TTGTTTGaaaaaaaCCTAGATATTGTA-TCAAAATTTCGTCTTAAA-AATCCAT-ATTT 739
|| |||||||| ||| ||| |||| | | | || | | ||| || ||| || |
Sbjct 553 ATT-TTTGAAAAGCACCCAGAGATTGCAGT-AGGGTTCCAAGT-AAAGAA-CCAACATCT 608
Query 740 GAAGACTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACGCTGTGTCAATCGCCTCA 799
|| || | | ||||||| |||| | | ||| || |||||||||||||| | |||
Sbjct 609 GAGGAAAACATTCATGAATTTCCTGGTCAACGTAATTGAGACGCTGTGTCAATCTCTTCA 668
Query 800 AGAACTCTCCAATGATGGTCTCTCTG-ATGCAGGTGTTGCACTGGCATATTTGATAGAAA 858
|| ||||| ||||| | ||| | || | | || |||||||| ||||||||| |||
Sbjct 669 GGAGCTCTCAAATGAAGATCT-TGTGGAAGTAGACATTGCACTGACATATTTGAAAGATG 727
Query 859 CAGGGCTT-AAGTTGGATTGGTTGGagaagaaacttgatgaatt-aaaggaaaagaagaa 916
| ||| || ||| |||||||||| |||||||| || || || | |||| |||||||| |
Sbjct 728 C-GGGATTTAAGGTGGATTGGTTAGAGAAGAAGCTGGACCAAGTGAAAG-AAAAGAAGGA 785
Query 917 gaaagaagaGTCTTGTTTGGTC 938
||||||| | ||| ||||||||
Sbjct 786 GAAAGAACAATCTGGTTTGGTC 807
> Ahg930958 jgi|Araly1|930958|scaffold_303415.1
Length=959
Score = 121 bits (65), Expect = 1e-26
Identities = 227/302 (75%), Gaps = 24/302 (8%)
Strand=Plus/Plus
Query 633 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTTTGTTTGaa 692
|||||||||||||||||||||||||||||||||| || |||||||| ||| | || |||
Sbjct 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCGAA 477
Query 693 aaaaaCCTAGATATTGTA-TCAAAATTTCGT-CTTAAA-AATCCAT-ATTTGAAGAC-TG 747
||| ||| ||| || | | | |||||| || | ||| || ||| |||||||||| |
Sbjct 478 AAACACCCAGACATGGCACT-AAAATTCCGAGC--AAAGAA-CCAACATTTGAAGACAT- 532
Query 748 CGTGCATGAATCTCCTCCTGAGTTTAACCGAA-ACGCTGTGTCAATCGCCT-CAAGAACT 805
| ||||| ||| ||||||| || |||| | || ||| |||| || || | | ||||| ||
Sbjct 533 CATGCATAAATGTCCTCCTCAGCTTAATC-AAGACGTTGTGCCAGTCAC-TGCAAGACCT 590
Query 806 CTCCAATGATGGTCTCT-CTGATGCAG-GTGTTGCACTGGCATATTTGATAGAAACAGGG 863
|||| ||||| || | | |||| | ||||| ||||| ||| | || |||
Sbjct 591 TTCCATTGATGACCTGGGCCAA-GCAGAGCAA-GCACTAACATATCTGA-ATAATTTGGG 647
Query 864 CTT-AAGTTGGATTGGTTGGagaag-aaacttgatgaattaaagg-aaaagaagaagaaa 920
||| ||| |||||||||||||| | ||||| || ||| |||||| |||| |||| | ||
Sbjct 648 CTTTAAGGTGGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAAA-AAGATGGAA 705
Query 921 ga 922
||
Sbjct 706 GA 707
> Ahg924373 jgi|Araly1|924373|scaffold_105654.1
Length=1003
Score = 100 bits (54), Expect = 2e-20
Identities = 257/351 (73%), Gaps = 30/351 (9%)
Strand=Plus/Plus
Query 599 ATCAAAGGAATCTTCACCAAT-AATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTC 657
||| |||||| ||||| || | || | ||| ||| | || |||||||||||||||||||
Sbjct 534 ATC-AAGGAAGCTTCATCAGTAAAAG-AAAGCAT-G--GTTAATGGGTTTCAAGTTCTTC 588
Query 658 CTTCACAGGTAGATTCTGTGA-AGCGTTTGTTTGaaaaaaa-CCTAGATATTGTA-TCAA 714
||||||||| ||| ||||||| | ||| | ||||||| | | || ||| ||||| | |
Sbjct 589 CTTCACAGGAAGAATCTGTGAGA-CGTATATTTGAAAGACATCC-AGACATTGTGGT-AG 645
Query 715 AATTTCGT-CTTAAA-AATCCAT-ATTTGAAGACTGCGTGCATGAATCTCCTCCTGAGTT 771
| || ||| | ||| || ||| | | | ||| | || |||||| || | || || |
Sbjct 646 ACTTCCGTGC--AAAGAA-CCAACAGCTCAGGACAACATGGATGAATTTCTTGCTCAGCT 702
Query 772 TAACCGAAACGCTGTGTCAA-TCGCCTCAAGAACTCTCCAATGATGGTCTCTCTG-ATGC 829
| | ||| |||||||| ||| || ||| || || |||||||| | ||| | || ||||
Sbjct 703 TGATCGAGACGCTGTG-CAAGTCAATTCAGGAGCTTTCCAATGACGATCT-TGTGGATGC 760
Query 830 AGGTGTTGCACTGGCATATTTGATAGAAACAGGG--CTT-AAGTTGGATTGGTTGGagaa 886
|| |||| ||| || | |||| || | | | ||| ||| | |||||| |||| ||
Sbjct 761 AGACATTGCGCTGACACACTTGAAAG---CTGTGAACTTTAAGGTAGATTGGCTGGAAAA 817
Query 887 gaaacttgatgaattaaaggaaaagaagaagaaagaagaGTCTTGTT-TGG 936
||| |||||| || |||| |||||||| ||||||||| |||| ||| |||
Sbjct 818 GAAGCTTGATCAAGTAAAAGAAAAGAAAAAGAAAGAACTGTCT-GTTGTGG 867
> Ahg937123 jgi|Araly1|937123|scaffold_501314.1
Length=1048
Score = 75.0 bits (40), Expect = 1e-12
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTT 684
||| ||| |||||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 532 AAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAAACGTA 591
Query 685 TGTTTGaaaaaaaCCTAGA 703
| || |||| | ||| |||
Sbjct 592 TATTCGAAAGACACCCAGA 610
> Ahg937127 jgi|Araly1|937127|scaffold_501318.1
Length=586
Score = 73.1 bits (39), Expect = 4e-12
Identities = 44/46 (96%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA 670
||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGA 567
> Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220
Length=1629
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 625 AAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 665
||||||| |||||||||||||||||||||||||||||||||
Sbjct 1214 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5