BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05420.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 732 0.0
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 640 0.0
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 612 2e-174
Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327 453 1e-126
Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 182 5e-45
Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 128 7e-29
Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 99.0 5e-20
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 732 bits (396), Expect = 0.0
Identities = 594/682 (87%), Gaps = 44/682 (6%)
Strand=Plus/Plus
Query 169 AATAATTTGGCTCTGTATTTAAACGTTGCTAATAGTAAATCTTTCCCTATTGGATGGACA 228
|||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||| |
Sbjct 136 AATAATTTGGCTCTCTATTTAATCGTTGCTAATAATGAATCTTTCCCTATTGGATGGAGA 195
Query 229 AGACACACTAAATTTTCTCTTACTTTAGTAAATCAAAAATCAGAAAAACTCTCCAAACTA 288
|||||| | ||||||||| |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 196 AGACACGCAAAATTTTCTTTTACTTTAGTAAATCAAAAATCAGAAAATCTCTCCATACTA 255
Query 289 A---CAGAATCACAACACTGGTTTGATCATAAGTCTACTAGCCGGGGGTTTCCAG-CTAT 344
| ||||||||||||||||||||||||| |||||||||||| ||||||||| || | ||
Sbjct 256 AGAACAGAATCACAACACTGGTTTGATCAGAAGTCTACTAGCTGGGGGTTTCAAGAC-AT 314
Query 345 GATTCCTCTCACT-AATCTGCATACTAATGAGGGATTTCTGGTGAATGGAGAACTCACCC 403
|||||| ||| || || || ||||| || ||||||||||||||||||||||||||||
Sbjct 315 GATTCCCCTCTCTGAA-CTTCATACCAAAGAGGGATTTCTGGTGAATGGAGAACTCATTG 373
Query 404 TTGTTGCCAAGG-TAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGAAATCT 462
||||||||| || |||| ||||||||||||||||||||||||||||| ||| || ||||
Sbjct 374 TTGTTGCCA-GGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGTATCT 432
Query 463 TCACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCT-CA-A-ATA-G- 517
||| ||||| |||||||| ||||||||||||||||||||||||||||| || | ||| |
Sbjct 433 TCATCAGTACTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGATATGC 492
Query 518 ---A-A--TC----------G---GT-GAATC-GTT--T-GTTTG--C-AAAA-CACCTA 549
| | || | || ||||| || | ||||| | |||| ||||||
Sbjct 493 TTTATACATCCTTTCCACTCGCACGTAGAATCAGTGAATCGTTTGTTCGAAAAACACCTA 552
Query 550 GATATTGCATCCAAATTTCGTCCAAAGAAACCATATATGAAGACGGCGTACATGAATGTT 609
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 553 GATATTGCATCAAAATTTCGTCCAAAGAATCCATATATGAAGACGGCGTACATGAATGTC 612
Query 610 CTCCTAAGCTTAACCAAGACGCTGTGCCAATCGCCTCAAGATCTCTCCAATGATGATATA 669
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 613 CTTATAAGCTTAACCAAGACGCTGTGCCAATCGCCTCAAGATCTCTCCAATGAGGATATG 672
Query 670 TCTGGTGCAGGCGCTGCACTGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTG 729
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TCTGGTGCAGGCGCTGCATTGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTG 732
Query 730 GAGAAGAAACATGGTGAGAT-AAAGGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAACG 788
|| ||||||| |||||| || |||||||||||||||||| |||||| | |||||||||||
Sbjct 733 GAAAAGAAACTTGGTGA-ATTAAAGGAAAAGAAGAAGAAAGAAGAGACGTCTTTGAAACG 791
Query 789 GCTGCAAGAAATGGAGAAACAG 810
|||||||||||||||| |||||
Sbjct 792 GCTGCAAGAAATGGAGGAACAG 813
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 640 bits (346), Expect = 0.0
Identities = 556/657 (85%), Gaps = 16/657 (2%)
Strand=Plus/Plus
Query 161 ATAGGGCTAATAATTTGGCTCTGTATTTAAACGTTGCTAATAGTAAATCTTTCCCTATTG 220
||| ||||||| |||| |||||||| || | ||| | ||| | ||||||| |||||||
Sbjct 137 ATAAGGCTAATTGTTTGTCTCTGTATCTACATGTTCCGGATATTGAATCTTTGCCTATTG 196
Query 221 GATGGACAAGACACACTAAATTTTCTCTTACTTTAGTAAATCAAAAATCAGAAAAACTCT 280
|||||| || |||| ||||||||||||| || |||||||||||| | |||| ||||||||
Sbjct 197 GATGGAGAATACACGCTAAATTTTCTCTAACATTAGTAAATCAATATTCAGGAAAACTCT 256
Query 281 CCAAACTAACAGA-ATCACAACACTGGTTTGATCATAAGTCTACTAGCCGGGGGTTTCCA 339
||||| ||| ||| | | || |||||||||||||| ||| || ||| | ||||||||| |
Sbjct 257 CCAAAATAAGAGAGA-CTCAGCACTGGTTTGATCAGAAGGCTCCTAACTGGGGGTTTCAA 315
Query 340 GCTATGATT-CCTCTCACT-AATCTGCATACTAATGAGGGATTTCTGGTGAATGGAGAAC 397
| |||||| || |||||| || || ||| | || | |||||| |||||||||||||||
Sbjct 316 GAAATGATTACC-CTCACTGAA-CTTCATGCCAAAGCGGGATTGGTGGTGAATGGAGAAC 373
Query 398 TCACCCTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGA 457
|||| ||||||||||| |||| |||||||||||||||||||||||||||| ||| ||
Sbjct 374 TCACAATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGGCTCAGAGG 433
Query 458 AATCTTCACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGTTCTTCC-TCA-A-A 514
|||||||| ||||| ||||||| ||||||||||||| |||||||||||||| ||| |
Sbjct 434 AATCTTCATCAGTAGTGGAAACGGTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGG 493
Query 515 TAGAATCGGTGAATCGTTTGTTTGCAAA-ACACCTAGATATTGCATCCAAATTTCGTCCA 573
||||||| ||||| | |||||||| ||| |||| |||| ||||||| |||||||||| |
Sbjct 494 TAGAATCAGTGAAGCTTTTGTTTG-AAAGTCACCAAGATTTTGCATCAAAATTTCGTCTA 552
Query 574 AAGAAACCATATATGAAGACGGCGTACATGAATGTTCTCCTAAGCTTAA-CCAAGACGCT 632
|| || ||||||||||||||||| ||||||||||||||| | ||||||| |||| |||||
Sbjct 553 AATAATCCATATATGAAGACGGCATACATGAATGTTCTCTTGAGCTTAACCCAA-ACGCT 611
Query 633 GTGCCAATCGCCTCAAGATCTCTCCAATGATGATATATCTGGTGCAGGCGCTGCACTGAC 692
|||| |||||||||||| ||||||||||||| | | | || ||| |||||||||||| |
Sbjct 612 ATGCCGATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTGATGCGGGCGCTGCACTGTC 671
Query 693 ATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACATGGTGA-GATAA 751
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 672 ATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTTGGTGAAG-TAA 730
Query 752 AGGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAACGGCTGCAAGAAATGGA-GAAA 807
|||||||||||||||| |||||||||| |||| ||||| || |||||||| ||||
Sbjct 731 AGGAAAAGAAGAAGAAAGAAGAGGCTTGTTTGGCCCGGCTTCACGAAATGGACGAAA 787
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 612 bits (331), Expect = 2e-174
Identities = 556/660 (84%), Gaps = 34/660 (5%)
Strand=Plus/Plus
Query 168 TAATAATTTGGCTCTGTATT-TAAACGTTGCTAATAGTA-AATCTTTCCCTATTGGATGG 225
|||| |||| |||||| || || ||||| || ||| | ||||||| ||||||||||||
Sbjct 129 TAAT-ATTT--CTCTGT-TTGTAGACGTTCCTCATA-AAGAATCTTTACCTATTGGATGG 183
Query 226 ACAAGACACACTAAATTTTCTCTTACTTTAGTAAATCAAAAATCAGAAAAACTCTC-CAA 284
| ||||||| ||||| ||||||| ||||||||||||||| || ||||||||||| | |
Sbjct 184 AGAAGACACGCTAAAATTTCTCTAACTTTAGTAAATCAATTTTCTGAAAAACTCTCTC-A 242
Query 285 ACTAACAGA-ATCACAACACTGGTTTGATCATAAGTCTA-CTAGCCGGGGGTTTCCAGCT 342
||||| ||| | ||| || |||||| |||| |||| || ||||| ||||||||| |||
Sbjct 243 ACTAAAAGAGA-GACAGCAGTGGTTTAATCAGAAGT-TATCTAGCTGGGGGTTTCTGGCT 300
Query 343 ATGATTCCTCTCACT-AATCTGCATACTA-ATGAGGGATTTCTGGTGAATGGAGAACTCA 400
||||||||||||||| || |||||| ||| | |||||||||||||||||||||||||||
Sbjct 301 ATGATTCCTCTCACTGAA-CTGCATGCTAGA-AAGGGATTTCTGGTGAATGGAGAACTCA 358
Query 401 CCCTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGAAAT 460
||||||||||| |||| ||||||||||||||||||||||||||||| ||| || |||
Sbjct 359 AAGTTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGAAT 418
Query 461 C-TTCACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCT-CAAA--TA 516
| || | ||||| |||||||| ||||||||||||||||||||||||||||| || | ||
Sbjct 419 CGTT-ATCAGTAGTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTA 477
Query 517 GAATCGGTGAATCGTTTGTTTGCAAAACACCTAGATATTGCATCCAAA-TTTCGTCCAAA 575
||||| ||||| |||||||||| |||||||| |||||||| ||| ||| ||||||| |||
Sbjct 478 GAATCTGTGAAGCGTTTGTTTGAAAAACACCAAGATATTGTATC-AAAGTTTCGTCTAAA 536
Query 576 GAAACCATATATGAAGACGGCGTACATGAATGTTCTCCTAAGCTTAA-CCAAGACGCTGT 634
||| |||||| |||||||||||| ||||||||| ||||| || || | |||| ||| |||
Sbjct 537 GAATCCATATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAA-ACGTTGT 595
Query 635 GCCAATCGCCTCAAGATCTCTCCAATGATGATATATCTGGTGCAGGCGCTGCACTG-ACA 693
| |||||||||||||| ||||||||||||| | | |||| |||||| | ||||||| | |
Sbjct 596 GTCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGA-A 654
Query 694 TATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACATGGTGA-GATAAA 752
||||||| ||| ||||| ||||||||||||||||||||||||||| |||||| | ||||
Sbjct 655 TATTTGATTGAAACAGGGCTTAAGTTGGATTGGTTGGAGAAGAAACTTGGTGAAG-TAAA 713
Query 753 GGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAAC-GGCTGCAAGAAATGGA-GAAACAG 810
||||||||||||||| |||||||| | ||| | | |||| | ||||||||| ||| |||
Sbjct 714 GGAAAAGAAGAAGAAAGAAGAGGCGTGTTT-AGTCCGGCTACGAGAAATGGACGAA-CAG 771
> Ahg319311 jgi|Araly1|319311|fgenesh1_pm.C_scaffold_3002327
Length=585
Score = 453 bits (245), Expect = 1e-126
Identities = 381/445 (86%), Gaps = 15/445 (3%)
Strand=Plus/Plus
Query 375 GGGATTTCTGGTGAATGGAGAACTCACCCTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGT 434
|||||||||| |||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 33 GGGATTTCTGATGAATGAAGAACTTATAGTTGTTGCCAAGATAGAGGTTCTTGAAGTTGT 92
Query 435 AGGAAAATTAGATGTATCA-AAGAAATCTTCACCAGTAATGGAAACCATAGATGTCAATG 493
|||||| |||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 93 AGGAAATTTAGATGTATCAGAAG-AATATTCACCAGTAATGAAAACCATAGATGTCAATG 151
Query 494 GGTTTCAAGTTCTTCCT-CAAAT-A-GAATCGGTGAA-TCGTTTGTTTGCAAA-ACACCT 548
||||||||||||||| | || | | ||||| ||||| || ||| |||| ||| ||| ||
Sbjct 152 GGTTTCAAGTTCTTCGTTCACAGGAAGAATCTGTGAAGTC-TTTATTTG-AAAGACATCT 209
Query 549 AGATATTGCATCCAAATTTCGTCCAAAGAAACCATATATGAAGACGGCGTACATGAATGT 608
| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 210 AAATATTGCATCAAAATTTCGTCCAAAGAATTCATACCTGAAGACGGCGTACATGAATGT 269
Query 609 TCTCCTAAGCTTAACC-AAGACGCTGTGCCAATCGCCTCAAGATCTCTCCAATGATGATA 667
||| | || |||||| || ||| | || ||||| |||||||| |||||||||||||||
Sbjct 270 CCTCTTGAGTTTAACCCAA-ACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGATC 328
Query 668 TATCTGGTGCAGGCGCTGCACTGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGT 727
| |||| ||| ||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 329 TCTCTGATGCTGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGGT 388
Query 728 TGGAGAAGAAACATGGTGA-GATAAAGGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAA 786
|||||||||||| || ||| | ||||||||||||| ||||| |||||||||| ||||
Sbjct 389 TGGAGAAGAAACTTGATGAAG-TAAAGGAAAAGAAAAAGAAAGAAGAGGCTTGTTTGGCC 447
Query 787 CGGCTGCAAGAAATGGA-GAAACAG 810
||| | |||||||| || ||| |||
Sbjct 448 CGGATACAAGAAATCGACGAA-CAG 471
> Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133
Length=849
Score = 182 bits (98), Expect = 5e-45
Identities = 531/728 (73%), Gaps = 77/728 (11%)
Strand=Plus/Plus
Query 46 AATTTCTCCTCTTTGCAATCCGCATCAA-TTCACTCTGATCAA-TTCGTGGTTGGTGATT 103
||||||||| ||||||||| | || || || | || ||| || ||||| |||||||| |
Sbjct 43 AATTTCTCCACTTTGCAAT-CTAATGAATTTTATTCCGAT-AATTTCGTAGTTGGTGACT 100
Query 104 GCAAATGGCGTCTTAAGGCCTATCCCAAGGGAAATGAAAAGGCGACTTATTTGGCTTATA 163
||||||||||||| ||||||||||||||||||| | || | ||| || ||
Sbjct 101 CCAAATGGCGTCTTCTGGCCTATCCCAAGGGAAAT------G-GA--GA--TGG-TTTTA 148
Query 164 GGGCTAATAA-TTTGGCTCTGTATT-TAAAC-GTTGCTAATAGTAAATCTTTCCCTATTG 220
||| || ||| |||||| || | | |||||| || | ||||||| |||| ||
Sbjct 149 ---ATAA-AAGTTTTTCTCTGT-TTCT-GGCTGTTGCTGATTCTGAATCTTTGCCTAATG 202
Query 221 GATGGACAAGACACACT-AAATTTTC-TCTTACT-TTAGTAAATCAAAAATCAGAAAAAC 277
| |||| |||||||| | ||| | || ||| ||| || || ||||||| || || ||||
Sbjct 203 GTTGGAAAAGACACA-TCAAA-TATCGTCTAACTGTT-GTTAATCAAATGTCGGAGAAAC 259
Query 278 TCTCCAAACTA--ACAGAATCACAA-CACTGGTTTGATCATAAGTCTAC-TAGCCGGGGG 333
| || |||| | | ||||| |||| | |||||||||||| || ||| | |||| ||||
Sbjct 260 TTTCTAAAC-AGGA-AGAATTACAATC-CTGGTTTGATCAGAATTCT-CTTAGCTGGGGC 315
Query 334 TTTCCAGCTATGATTCCTCTCACTAATC-TGCAT-AC--TAATGA-GGGATTTCTGGTGA 388
| ||||| ||| |||| || || || | || | || ||||| ||| ||||||||||
Sbjct 316 TACCCAGCAATGCTTCCCCTTACCAAACTTG-TTGACGAAAATGATGGG-TTTCTGGTGA 373
Query 389 ATGGAGAACTCACCCTTGTTGCCAAGGTAGAG-GTTCTTGAAGTTGTAGGAAAATTAGAT 447
|||||||| ||| |||||||| |||| | | |||||||||||||| || |||| ||||
Sbjct 374 ATGGAGAAGTCAAGGTTGTTGCCGAGGTTG-GTGTTCTTGAAGTTGTTGGCAAATCAGAT 432
Query 448 GTATCA-AAGAAATCTTCACCAG-TAATGGAAACCATAGATGTCAATGGGTTTCAAGTTC 505
|| | | |||| ||| | || | | ||||| ||| ||||||||||||||||||||||
Sbjct 433 GTGTTAGTGGAAA-CTTTATTAGTTCA-GGAAAGCATCGATGTCAATGGGTTTCAAGTTC 490
Query 506 TT-C--CTCAAATAGAATCGGTGAATC-GTTTGTTTGCAAAA-CACCTAGATATTGCATC 560
|| | |||| |||| || ||||| | | | ||| |||| ||| ||| |||||||
Sbjct 491 TTCCTTCTCAGGTAGACTCTGTGAA-CAATCTCTTT-AAAAATTACCCAGACATTGCAT- 547
Query 561 CAAATTTC-GTCCAAAGAAACC-A-TATATGAAGA-CGGCGTACATGAAT-GTTCTCCTA 615
|||| ||| ||| || |||| | | | || ||| | | ||||||||| | || |||
Sbjct 548 CAAAATTCTGTCTGGAG-AACCAACT-TCTG-AGAGCAACATACATGAATAG-CCTACTA 603
Query 616 AGCTTAACCAAGACGCTGTGCCAATCGCCTCAAG-ATCTCTCCAATGATGATATATCTGG 674
|||| || ||| ||| |||| || ||| || | ||||| | || |||| | |
Sbjct 604 TGCTTGACTGAGATTCTGAGCCAGTCCCCT-GAGAAACTCTCTAGTGTTGATCTCGCCAA 662
Query 675 TGCAGGCGCTG--CACTGA-CATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGA 731
|||| | || |||| | | | | ||| | |||| || ||||||||||||||||||||
Sbjct 663 TGCA--CATTGTACACT-ATCTTCTCTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGA 719
Query 732 GAAGAAAC 739
||||||||
Sbjct 720 GAAGAAAC 727
> Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375
Length=1089
Score = 128 bits (69), Expect = 7e-29
Identities = 424/587 (72%), Gaps = 58/587 (10%)
Strand=Plus/Plus
Query 179 CTCTGTATTTAAACGTTGCTAATAGTAAATCTTTCCCTAT-TGGATGGACAAGACACACT 237
|||| ||| || | ||| ||||| ||| ||||| ||| | ||||||| ||||||| ||
Sbjct 431 CTCTTTATATATATGTTCCTAATTCTAAGTCTTTGCCT-TCCGGATGGAGAAGACACGCT 489
Query 238 AAATTTTCTCTTACTTTAGTAAATCAAAAAT-CAGAAAAACTCTCCAAACTAAC-AGAAT 295
||||||||| ||||| | |||| || ||| | | | | |||||||| || | | ||||
Sbjct 490 AAATTTTCTTTTACTATGGTAACTC-AAATTCCGGGAGAACTCTCCCTAC-AGCGAGAAG 547
Query 296 CACAACACTGGTTTGATCATAAG-TCTACTAGCC-GGGGGTTTCCAGCTATGATTCCT-C 352
|| || | ||||||||||| ||| | || | || |||| |||| | ||||| || || |
Sbjct 548 CAGAATATTGGTTTGATCAAAAGAAC-AC-AACCAGGGGTTTTCAATCTATG-TTTCTCC 604
Query 353 TCAC-TA-A-TC--TGCA-TAC-TAATGAGGGATTTCTGGTGAATGGAGAACTCACCCTT 405
| | | | || ||| | | ||| |||| ||||| || || |||||| ||| ||
Sbjct 605 TTTCGGAGATTCAAAGCAGT-CATAA--AGGG-TTTCTTGTAAACGGAGAAGTCAAGATT 660
Query 406 GTTGCCA-AGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGAAATCTTC 464
|||| || | ||||| || ||||||||| | || | | | |||||| | || ||
Sbjct 661 GTTG-CAGAAGTAGATGTGCTTGAAGTTATTGGTATAGTCGATGTACCCGAG-AA----- 713
Query 465 ACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGT-TCTTCCTCA-AA-TAGAATC 521
||| | |||| | | ||| |||||||||||||||| || | ||| || |||| ||
Sbjct 714 ACC----A--GAAAGCTTTGATATCAATGGGTTTCAAGTCCCTGCTTCACAAGTAGATTC 767
Query 522 GGTGAATC-GTTTGTTTGCAAAA-CACCTA-GATATTGCATCCAAATTTC-GTCCAAAGA 577
||||| | || ||||| |||| ||| | | | |||||| |||| || |||| ||||
Sbjct 768 TGTGAA-CAGTCTGTTT-AAAAAGTACCCAGGCT-TTGCAT-CAAAAGTCTGTCCCAAGA 823
Query 578 AACCATATATGAAGACGGCGTACATGAATGTTCTCCTAAG-CTTAACCAAGACGCTGTGC 636
| ||| || |||||| | ||| |||||||| | ||||| || || ||| ||||
Sbjct 824 ACCCACATTTGAAGAAAACATACTTGAATGTTGTACTAAGTCTGAA-TGAGATTATGTG- 881
Query 637 CAA-TCGCCTCA-AGATCTCTCCAATGATGATATAT-CTGGTGCAGGCGCTGCACTGAC- 692
||| || ||| | | | ||||| |||| |||| | | ||| |||| ||||||| ||
Sbjct 882 CAAGTCCCCTGATA-AACTCTCTAATGGTGATCT-TGCTGATGCATATTCTGCACT-ACG 938
Query 693 ATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAAC 739
|||| ||| | |||||||||||||||||||||||||||||| |||||
Sbjct 939 ATATGTGACAAAAGCAGGGTTTAAGTTGGATTGGTTGGAGATGAAAC 985
> Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742
Length=954
Score = 99.0 bits (53), Expect = 5e-20
Identities = 220/297 (74%), Gaps = 25/297 (8%)
Strand=Plus/Plus
Query 485 ATGTCAATGGGTTTCAAGTTCTTCC-TCA-A-AT-AGAATCGGTGAATCGTTTGTTTGCA 540
||||||| ||||||||||||||||| ||| | | | || |||||||| | |||| |
Sbjct 527 ATGTCAAGGGGTTTCAAGTTCTTCCTTCACAGTTGGGTAT-TGTGAATCGCATCTTTG-A 584
Query 541 -AAACACCTAGATATTGCATCCA-AATTTC-GTCCAAAGAAACC-ATATA-TGAAGA-CG 594
||||||| || | ||||| | || | | || ||||| |||| | | | || ||| |
Sbjct 585 GAAACACCCGGAGACTGCAT-TAGAA-TGCTGTACAAAG-AACCAAGA-ACTG-AGAGCA 639
Query 595 GCGTACATGAATGTTC-TCCTAAGCTTAACCAAGACGCTGTGCCAATCGCCTCAAGATCT 653
| ||||| |||| || || | ||| ||| ||||| ||| | | || | |||| || |
Sbjct 640 TCATACATAAATG-TCATCTTTAGCCTAATCAAGATGCTCTACAAAGGGGCTCAGGAACA 698
Query 654 CTCCA-ATGATGATATATCTGGTGCAGGCGCTGCACTGACATATTTGAGAGAA-GCAGGG 711
||||| | ||||| | |||| ||||| | ||| ||| |||| ||| | || | ||||
Sbjct 699 CTCCACA-CATGATCTGTCTGATGCAGAAGGTGCTCTGGCATACATGA-AAAATGTAGGG 756
Query 712 TTTAAGTTGGATTGGTTGGAGAAGAAACATGGTGA-GATAAAGGAAAAGAAGAAGAA 767
|||||||||||||||||||||||||||| || ||| | |||| |||| ||||||||
Sbjct 757 TTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAAG-TAAAAGAAATCAAGAAGAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5