BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05430.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905870 jgi|Araly1|905870|Al_scaffold_0003_2998 745 0.0
Ahg930857 jgi|Araly1|930857|scaffold_303314.1 464 6e-130
> Ahg905870 jgi|Araly1|905870|Al_scaffold_0003_2998
Length=543
Score = 745 bits (403), Expect = 0.0
Identities = 476/512 (93%), Gaps = 1/512 (0%)
Strand=Plus/Plus
Query 475 AGAGAGTAAATCAACACTTTCTCATCATGGTACTGCATATGATGAGGATTTGGACAATGA 534
|||||||||||| | | ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 33 AGAGAGTAAATCGATAGTTTCTCATCCTGGTACTGCATATGATGAGGATTGGGACAATGA 92
Query 535 TGAAATCGTGAACATAAAAGGCTTTTGGATTTTCCGATCAAAGTTAGGTCTAGCGAAACG 594
||||||||||| |||||| || |||||||||||||||||| |||||| ||||||||||||
Sbjct 93 TGAAATCGTGAGCATAAACGGGTTTTGGATTTTCCGATCACAGTTAGATCTAGCGAAACG 152
Query 595 AGTCTTTGAGAAACATCCAGAGACGACAACAAAATTTTGTCTAAAGAGTGAATTTGCCAA 654
| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 153 AATCTTTGAGAAACATCCAGAGACGGCATCAAATTTTTGTCTAAAGAGTGAATTTGCCAA 212
Query 655 GGAAACTTACTTGACTGCCCTACTAGACCTCATTGACATGATAAACATGTTACCTCAGCA 714
|||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||
Sbjct 213 GGAAACATACTTGACTGCGTTACTAGATCTCATCGACATGATGAACATGTTACCTCAGCA 272
Query 715 ATCTCTCTTCGAAGCCGAACTAAAAGAAGCAGAAAACACAATTTTGGACCTTGAAGCTGC 774
||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 273 ATCACTCTTTGAAGCCGAACTAAAAGAAGCACAAAACACAATTTTGGACCTGGAAGCCGC 332
Query 775 CGGTTTCAAGTTGGATTGGTTGAAAAGGAAGCTTGAGGAGATTCGTGTTACTAAGAAGAA 834
||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 333 CGGTTTCAAATTGGATTGGTTGAAAAGGAACCTTGAGGAGATTCGTTTTACTAAGAAGAA 392
Query 835 AGCGAAGAACCGCACGACTCGGATGAGAGAACTAGACCGAAAGATTCAGAAGCATTTGGA 894
|| |||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 393 AGTGAAGGACCGCACGGCTCGGATGAGAGAACTAGACCGAAATATCCAGAAGCATTTGGA 452
Query 895 GGAGTTGTCGGTCCTTCAAGAAGAAATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACAA 954
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GGAGTTGTCAGTCCTTCAAGAAGAAATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACAA 512
Query 955 ACCTGAATATTATTTAGACTCACTTTGTTTGA 986
|||||||||| |||||||||||||| ||||||
Sbjct 513 ACCTGAATATCATTTAGACTCACTT-GTTTGA 543
> Ahg930857 jgi|Araly1|930857|scaffold_303314.1
Length=566
Score = 464 bits (251), Expect = 6e-130
Identities = 468/570 (82%), Gaps = 25/570 (4%)
Strand=Plus/Plus
Query 449 TTGGTCGTGA-CAATGTCGAAGATA-TCAGAGAGTAAATCAACACTTTCTCATCATGGTA 506
|||||||| | |||||||||||||| | |||||||||||||||||||||| ||| | |||
Sbjct 9 TTGGTCGT-ATCAATGTCGAAGATAGT-AGAGAGTAAATCAACACTTTCTTATCCTAGTA 66
Query 507 CTGCATATGATGAG-GATTTGGACAATGATGAAATCGTGAACATAAAAGGCTTTTGGATT 565
|| || || || | ||||| |||| |||||||| |||||||||||| || |||||||||
Sbjct 67 CTTCACATTTTG-GCGATTTTGACACTGATGAAACCGTGAACATAAACGGTTTTTGGATT 125
Query 566 TTCCGATCAAAGTTAGGTCTAGCGAAA-CGAGTCTTTGAGA-AACATCCAGAGACGACAA 623
| ||||||| ||||||||| ||| ||| | | ||||| | | |||||||||||||| |
Sbjct 126 TGCCGATCACAGTTAGGTCAAGC-AAAGCTAATCTTT-AAAGAACATCCAGAGACGGCTT 183
Query 624 CAAAATTTTGTCTAAAGAGTGAATTTGCCAAGGAAACTTACTTGACTGCCCTACTAGACC 683
|||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 184 CAAATTTTTGTCTAAAGAGTTTCTTTGCCAAGGAAACTTACTTGACTGCCCTTTTAAACC 243
Query 684 TCATTGACATGATAAACATGTTACCTC-AGCAATCTCTCTTCGAAGCCGAACTAAAAGAA 742
|||| |||| ||| ||||||||| ||| | |||||||||| | ||| ||| ||||| |||
Sbjct 244 TCATCGACAAGATGAACATGTTATCTCTA-CAATCTCTCTCCAAAGACGATCTAAAGGAA 302
Query 743 GCAGAAAACACAATTTTGGACCTTGAAGCTGCCGGTTTCAAGTTGGATTGGTTGAAAAGG 802
| ||| |||||||||||||| |||||||| || |||||||| |||||||||| |||| |
Sbjct 303 GTAGACAACACAATTTTGGATCTTGAAGCCGCTGGTTTCAAACTGGATTGGTTAAAAAAG 362
Query 803 AAGCTTGAGGAGATTCGTGTTACTAAGAAGAAAGCGAAGAACCGC-ACGACTCGGATGAG 861
|| |||||||||||||||||| | |||||||||| || |||| | | ||||||||||
Sbjct 363 AAATTTGAGGAGATTCGTGTTATTGTGAAGAAAGCGCAGGACCGTGAGG-CTCGGATGAG 421
Query 862 AGAACTAGACCGAAAGATTCAG-AAGCATTTGGAGGAGTTG-TCGGTCCTTCAAGA-AGA 918
|||||||||||||||||| | | ||| | || | |||||| | ||| ||| |||| | |
Sbjct 422 AGAACTAGACCGAAAGATCC-GTAAGAAGATGCATGAGTTGGT-GGTTCTTGAAGACA-A 478
Query 919 AATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACA-AACCTGAATATTATTTA-GACTCA 976
|||||||||||||||| ||||||||| | || | ||| || |||||||| | ||||
Sbjct 479 AATGAAGAAGGAGCAGCTTGAGGCTAAATCCGA-AGAACTTGGATATTATT-ACGACTTT 536
Query 977 CTTTGTTTGAATGAAGTCACATGTGACTCT 1006
||| |||||| ||||| ||||||| |||
Sbjct 537 -TTTATTTGAAGGAAGTTGCATGTGATTCT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5