BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G05430.1 Length=1192 Score E Sequences producing significant alignments: (Bits) Value Ahg905870 jgi|Araly1|905870|Al_scaffold_0003_2998 745 0.0 Ahg930857 jgi|Araly1|930857|scaffold_303314.1 464 6e-130 > Ahg905870 jgi|Araly1|905870|Al_scaffold_0003_2998 Length=543 Score = 745 bits (403), Expect = 0.0 Identities = 476/512 (93%), Gaps = 1/512 (0%) Strand=Plus/Plus Query 475 AGAGAGTAAATCAACACTTTCTCATCATGGTACTGCATATGATGAGGATTTGGACAATGA 534 |||||||||||| | | ||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 33 AGAGAGTAAATCGATAGTTTCTCATCCTGGTACTGCATATGATGAGGATTGGGACAATGA 92 Query 535 TGAAATCGTGAACATAAAAGGCTTTTGGATTTTCCGATCAAAGTTAGGTCTAGCGAAACG 594 ||||||||||| |||||| || |||||||||||||||||| |||||| |||||||||||| Sbjct 93 TGAAATCGTGAGCATAAACGGGTTTTGGATTTTCCGATCACAGTTAGATCTAGCGAAACG 152 Query 595 AGTCTTTGAGAAACATCCAGAGACGACAACAAAATTTTGTCTAAAGAGTGAATTTGCCAA 654 | ||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| Sbjct 153 AATCTTTGAGAAACATCCAGAGACGGCATCAAATTTTTGTCTAAAGAGTGAATTTGCCAA 212 Query 655 GGAAACTTACTTGACTGCCCTACTAGACCTCATTGACATGATAAACATGTTACCTCAGCA 714 |||||| ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| Sbjct 213 GGAAACATACTTGACTGCGTTACTAGATCTCATCGACATGATGAACATGTTACCTCAGCA 272 Query 715 ATCTCTCTTCGAAGCCGAACTAAAAGAAGCAGAAAACACAATTTTGGACCTTGAAGCTGC 774 ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| || Sbjct 273 ATCACTCTTTGAAGCCGAACTAAAAGAAGCACAAAACACAATTTTGGACCTGGAAGCCGC 332 Query 775 CGGTTTCAAGTTGGATTGGTTGAAAAGGAAGCTTGAGGAGATTCGTGTTACTAAGAAGAA 834 ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 333 CGGTTTCAAATTGGATTGGTTGAAAAGGAACCTTGAGGAGATTCGTTTTACTAAGAAGAA 392 Query 835 AGCGAAGAACCGCACGACTCGGATGAGAGAACTAGACCGAAAGATTCAGAAGCATTTGGA 894 || |||| |||||||| ||||||||||||||||||||||||| || |||||||||||||| Sbjct 393 AGTGAAGGACCGCACGGCTCGGATGAGAGAACTAGACCGAAATATCCAGAAGCATTTGGA 452 Query 895 GGAGTTGTCGGTCCTTCAAGAAGAAATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACAA 954 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 GGAGTTGTCAGTCCTTCAAGAAGAAATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACAA 512 Query 955 ACCTGAATATTATTTAGACTCACTTTGTTTGA 986 |||||||||| |||||||||||||| |||||| Sbjct 513 ACCTGAATATCATTTAGACTCACTT-GTTTGA 543 > Ahg930857 jgi|Araly1|930857|scaffold_303314.1 Length=566 Score = 464 bits (251), Expect = 6e-130 Identities = 468/570 (82%), Gaps = 25/570 (4%) Strand=Plus/Plus Query 449 TTGGTCGTGA-CAATGTCGAAGATA-TCAGAGAGTAAATCAACACTTTCTCATCATGGTA 506 |||||||| | |||||||||||||| | |||||||||||||||||||||| ||| | ||| Sbjct 9 TTGGTCGT-ATCAATGTCGAAGATAGT-AGAGAGTAAATCAACACTTTCTTATCCTAGTA 66 Query 507 CTGCATATGATGAG-GATTTGGACAATGATGAAATCGTGAACATAAAAGGCTTTTGGATT 565 || || || || | ||||| |||| |||||||| |||||||||||| || ||||||||| Sbjct 67 CTTCACATTTTG-GCGATTTTGACACTGATGAAACCGTGAACATAAACGGTTTTTGGATT 125 Query 566 TTCCGATCAAAGTTAGGTCTAGCGAAA-CGAGTCTTTGAGA-AACATCCAGAGACGACAA 623 | ||||||| ||||||||| ||| ||| | | ||||| | | |||||||||||||| | Sbjct 126 TGCCGATCACAGTTAGGTCAAGC-AAAGCTAATCTTT-AAAGAACATCCAGAGACGGCTT 183 Query 624 CAAAATTTTGTCTAAAGAGTGAATTTGCCAAGGAAACTTACTTGACTGCCCTACTAGACC 683 |||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 184 CAAATTTTTGTCTAAAGAGTTTCTTTGCCAAGGAAACTTACTTGACTGCCCTTTTAAACC 243 Query 684 TCATTGACATGATAAACATGTTACCTC-AGCAATCTCTCTTCGAAGCCGAACTAAAAGAA 742 |||| |||| ||| ||||||||| ||| | |||||||||| | ||| ||| ||||| ||| Sbjct 244 TCATCGACAAGATGAACATGTTATCTCTA-CAATCTCTCTCCAAAGACGATCTAAAGGAA 302 Query 743 GCAGAAAACACAATTTTGGACCTTGAAGCTGCCGGTTTCAAGTTGGATTGGTTGAAAAGG 802 | ||| |||||||||||||| |||||||| || |||||||| |||||||||| |||| | Sbjct 303 GTAGACAACACAATTTTGGATCTTGAAGCCGCTGGTTTCAAACTGGATTGGTTAAAAAAG 362 Query 803 AAGCTTGAGGAGATTCGTGTTACTAAGAAGAAAGCGAAGAACCGC-ACGACTCGGATGAG 861 || |||||||||||||||||| | |||||||||| || |||| | | |||||||||| Sbjct 363 AAATTTGAGGAGATTCGTGTTATTGTGAAGAAAGCGCAGGACCGTGAGG-CTCGGATGAG 421 Query 862 AGAACTAGACCGAAAGATTCAG-AAGCATTTGGAGGAGTTG-TCGGTCCTTCAAGA-AGA 918 |||||||||||||||||| | | ||| | || | |||||| | ||| ||| |||| | | Sbjct 422 AGAACTAGACCGAAAGATCC-GTAAGAAGATGCATGAGTTGGT-GGTTCTTGAAGACA-A 478 Query 919 AATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACA-AACCTGAATATTATTTA-GACTCA 976 |||||||||||||||| ||||||||| | || | ||| || |||||||| | |||| Sbjct 479 AATGAAGAAGGAGCAGCTTGAGGCTAAATCCGA-AGAACTTGGATATTATT-ACGACTTT 536 Query 977 CTTTGTTTGAATGAAGTCACATGTGACTCT 1006 ||| |||||| ||||| ||||||| ||| Sbjct 537 -TTTATTTGAAGGAAGTTGCATGTGATTCT 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44489444139 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5