BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G05440.2

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930858 jgi|Araly1|930858|scaffold_303315.1                        479    1e-134
  Ahg342855 jgi|Araly1|342855|fgenesh1_pg.C_scaffold_3002618           383    1e-105
  Ahg930849 jgi|Araly1|930849|scaffold_303306.1                        121    9e-27 


> Ahg930858 jgi|Araly1|930858|scaffold_303315.1
Length=430

 Score =  479 bits (259),  Expect = 1e-134
 Identities = 336/370 (91%), Gaps = 18/370 (5%)
 Strand=Plus/Plus

Query  33   GTTATTAGAACTTGCAAAAAATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCTCAG  92
            |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  1    GTTATTAGAACTTGAAAAAAATGGCTTCCAAGGCTTTGATTCTGTTGGGTCTCTTCGCAG  60

Query  93   TTCTTCTCGTCGTCTCCGAAGTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGA  152
            |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   TTCTTCTCGTCGTCTCGGAAGTGTCTGCCGCAAGGCAGTCGGGCATGGTGAAGCCAGAGA  120

Query  153  GTGAGGAAACTGTGCAACCTGAAGGTTATGGCGGTGGCCACGGAGGACATGGTGGTCACG  212
            |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||
Sbjct  121  GTGAGGAAACTGTGCAACCTGAAGGTTATGGCGGTGGTTACGGAGGACATGGTGGTTACG  180

Query  213  GAGGGGGAGGAGGCCACGGACATGGAGGACACAACggaggagggggccacggacttgacg  272
            ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||
Sbjct  181  GAGGGGGAGGAGGCCACGGAGGTGGAGGACACAAAGGAGGAGGGGGCCACGGACTTGACG  240

Query  273  gatacggaggagg---tggaggacactatggaggaggtggaggacactacggaggaggtg  329
            |||||||||||||   ||| ||  ||   |||||   |||||||||| ||||||||||||
Sbjct  241  GATACGGAGGAGGAAATGGTGGTTAC---GGAGG---TGGAGGACACCACGGAGGAGGTG  294

Query  330  g---aggacactacggaggaggtgg---aggacactacggaggaggtgg---aggacact  380
            |   |||||||||||||||||||||   |||||||||||||||||||||   ||||||| 
Sbjct  295  GTGGAGGACACTACGGAGGAGGTGGTGGAGGACACTACGGAGGAGGTGGTGGAGGACACC  354

Query  381  acggaggagg  390
            ||||||||||
Sbjct  355  ACGGAGGAGG  364


> Ahg342855 jgi|Araly1|342855|fgenesh1_pg.C_scaffold_3002618
Length=411

 Score =  383 bits (207),  Expect = 1e-105
 Identities = 330/383 (86%), Gaps = 33/383 (9%)
 Strand=Plus/Plus

Query  53   ATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCTCAGTTCTTCTCGTCGTCTCCGAA  112
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  1    ATGGCTTCCAAGGCTTTGATTCTGTTAGGGCTCTTCGCAGTTCTTCTCGTCGTCTCCGAA  60

Query  113  GTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGAGTGAGGAAACTGTGCAACCT  172
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTGTCTGCCGCAAGGCAGTCGGGCATGGTGAAGCCAGAGAGTGAGGAAACTGTGCAACCT  120

Query  173  GAAGGTTATGGCGGTGGCCACGGAGGACATGGTGGTCACGGAGGGGGAGGAGGCCACGGA  232
            |||||  |||| ||||||||||||||||||||||||||||||||   |||   |||||||
Sbjct  121  GAAGGACATGGTGGTGGCCACGGAGGACATGGTGGTCACGGAGG---AGG---CCACGGA  174

Query  233  CATGGAGGACACAACggaggagggggccacggacttgacggatacggaggaggtggagga  292
            |||||||||||| |||||||||||||||||||||||||||||||||||||   ||||   
Sbjct  175  CATGGAGGACACCACGGAGGAGGGGGCCACGGACTTGACGGATACGGAGG---TGGA---  228

Query  293  cactatggaggaggtggaggacactacggaggaggtggaggacactacggaggaggt--g  350
            ||||| ||||||||   |||||||||||||||||| ||||| | | |||||  |  |  |
Sbjct  229  CACTACGGAGGAGG---AGGACACTACGGAGGAGGAGGAGG-C-C-ACGGAC-AC-TACG  280

Query  351  gaggacactacggaggaggtgga-ggacactacggaggaggtggtgg--a-ggacac---  403
            |||||    | ||||||||   | ||||||||||||||||| || ||  | ||||||   
Sbjct  281  GAGGAGG--A-GGAGGAGGCC-ACGGACACTACGGAGGAGGAGGAGGCCACGGACACTAC  336

Query  404  ggaggtggaggacactacggagg  426
            |||||||||  |||| |||||||
Sbjct  337  GGAGGTGGAAAACACCACGGAGG  359


> Ahg930849 jgi|Araly1|930849|scaffold_303306.1
Length=388

 Score =  121 bits (65),  Expect = 9e-27
 Identities = 154/194 (79%), Gaps = 17/194 (9%)
 Strand=Plus/Plus

Query  44   TTGCAA-AAAATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCT-CAGTTCTTCTCG  101
            ||| || ||||||||||||||| ||||| |||| || |||||||| | || ||||| || 
Sbjct  11   TTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTT-TGCATTTCTTTTCA  69

Query  102  TCGTCTCCGAAGTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGAGTGAGGAAA  161
            ||||||| ||| ||   ||||| | |    |||||| ||||||| |||||||||||||||
Sbjct  70   TCGTCTCAGAAATG---GCCGC-A-G----CGGGCACGGTGAAGTCAGAGAGTGAGGAAA  120

Query  162  CTGTGCAACCTGAAGGTTATGGCGGTGGCCACGGAGGACA-TGGTGG-T-CA-CGGAGGG  217
            |||||||||||||     |||| ||| || |||| | ||| ||| || | || |||||||
Sbjct  121  CTGTGCAACCTGATCAACATGGTGGTCGCTACGGTG-ACAATGGAGGCTACAGCGGAGGG  179

Query  218  GGAGGAGGCCACGG  231
            |||||||||| |||
Sbjct  180  GGAGGAGGCCGCGG  193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26762287734


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5