BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05530.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480173 jgi|Araly1|480173|fgenesh2_kg.3__2874__AT2G05530.1 525 1e-148
Ahg930849 jgi|Araly1|930849|scaffold_303306.1 231 3e-60
> Ahg480173 jgi|Araly1|480173|fgenesh2_kg.3__2874__AT2G05530.1
Length=549
Score = 525 bits (284), Expect = 1e-148
Identities = 426/490 (87%), Gaps = 28/490 (6%)
Strand=Plus/Plus
Query 41 AGAATGGCTTCCAAGGCTTTAGTTCTGTTTGGTCTATTTGCAGTTCTTCTCGTCGTCACA 100
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 20 AGAATGGCTTCCAAGGCTTTAGTTCTGTTGGGTCTATTTGCAGTTCTTCTCGTCGTCTCA 79
Query 101 GAAGTTG-C-C-GCTGCATCCGGTACAGTGAAGTCAGAGAGTGGGGAAACCGTGCAACCT 157
||||| | | | ||||||||||||||||| ||||| ||||||| |||||||||| || ||
Sbjct 80 GAAGTCGCCGCTGCTGCATCCGGTACAGTTAAGTCCGAGAGTGAGGAAACCGTGAAAACT 139
Query 158 GATCAATATAATGGCGGTCACGGCGG-CAATggaggctacaacggaggaggaggttacaa 216
||||||||| ||| | || ||||| | |||||||||||||||||||||||| |||||
Sbjct 140 GATCAATATGGTGGTGACCATGGCGGTC-GTGGAGGCTACAACGGAGGAGGAGGCTACAA 198
Query 217 cggaggaggaggtcacaacggaggaggttacaacggaggaggaggatacaatggaggagg 276
||||||||||||| |||| |||||||| ||||| |||||||| |||||||| ||
Sbjct 199 CGGAGGAGGAGGTTACAATGGAGGAGGACACAACAGAGGAGGAAGATACAAT------GG 252
Query 277 acacggaggaAGACATGGTTACTGTCGCTATGGCTGTTGCTACAGAGGTTACCATGGCTG 336
| ||| | | ||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 253 --A-GGA-G--G---TGGTTACTGCCGCTATGGCTGCTGCTACAGAGGTTACCGTGGCTG 303
Query 337 TTCAAGGTGTTGTTCGTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTCACTAAATTAA 396
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTCAAGGTGTTGTTCTTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTCACTAAA---- 359
Query 397 ACAATATAATAAGTTGACCACCATGCATGATTGTACCTAGATATACACTTACGTGTATAT 456
|||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||
Sbjct 360 -CAATATAATAAGTTGACCACCATGCATGATGGTATCTAAATATACACTTATGTGTATAT 418
Query 457 GACTATAGGTTAATTAATTATGGTGCGTTTGTAATGAAGTGCCTTAT-AAG--TAATGGG 513
|||||||||| || |||| ||||||||||||||||||||| | ||| ||| |||||||
Sbjct 419 GACTATAGGTAAAGTAATCATGGTGCGTTTGTAATGAAGTACGTTAAGAAGAGTAATGGG 478
Query 514 AATAAAGTTT 523
||||||||||
Sbjct 479 AATAAAGTTT 488
> Ahg930849 jgi|Araly1|930849|scaffold_303306.1
Length=388
Score = 231 bits (125), Expect = 3e-60
Identities = 300/379 (79%), Gaps = 33/379 (9%)
Strand=Plus/Plus
Query 43 AATGGCTTCCAAGGCTTTAG-TTCTGTTT-GGTCTATTTGCAGTTCTTCTCGTCGTCACA 100
||||||||||||| |||| | |||| ||| ||||| |||||| ||||| || ||||| ||
Sbjct 20 AATGGCTTCCAAGACTTT-GCTTCT-TTTGGGTCTCTTTGCATTTCTTTTCATCGTCTCA 77
Query 101 GAAGTTGCCGCTGCATCCGGTACAGTGAAGTCAGAGAGTGGGGAAACCGTGCAACCTGAT 160
||| || || ||| | || || |||||||||||||||| |||||| ||||||||||||
Sbjct 78 GAA-ATG--GCCGCAGCGGGCACGGTGAAGTCAGAGAGTGAGGAAACTGTGCAACCTGAT 134
Query 161 CAATATAATGG-CGGTCACGGCGGCAATggaggctacaacgga---ggagga------gg 210
||| || ||| || | |||| | |||||||||||||| |||| |||||| ||
Sbjct 135 CAACATGGTGGTCGCT-ACGGTGACAATGGAGGCTACAGCGGAGGGGGAGGAGGCCGCGG 193
Query 211 ttacaacggaggaggagg-tca-caacggaggaggttacaacggaggaggaggatacaat 268
| | ||||||||||||| | | ||| |||||||| | | ||||||||||| |
Sbjct 194 TGGCCACGGAGGAGGAGGAT-ACCAA-GGAGGAGG--AGGA-GGAGGAGGAGG--GGGA- 245
Query 269 ggaggag-gacacggagga-AGACATGGTTACTGTCGCTATGGCTGTTGCTACAGAGGTT 326
|| || | ||| ||||||| | | |||||||| ||| | ||||| ||||||| |||||
Sbjct 246 GGTGG-GCGACGCGGAGGAGGGGGA-GGTTACTGCCGCCACGGCTGCTGCTACAAAGGTT 303
Query 327 ACCATGGCTGTTCAAGGTGTTGTTCGTATGCTGGAGAAGCTGTTCAGACTCAGCCTGGTC 386
||| |||||| |||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 304 ACCGTGGCTGCTCAAGGTGTTGTTCATACGCCGGAGAAGCTGTTCAGACTCAGCCTGGTC 363
Query 387 ACTAAAT-TAAACAATATA 404
||||||| || | ||||||
Sbjct 364 ACTAAATCTACATAATATA 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5