BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G05540.1

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342859 jgi|Araly1|342859|fgenesh1_pg.C_scaffold_3002622           396    1e-109


> Ahg342859 jgi|Araly1|342859|fgenesh1_pg.C_scaffold_3002622
Length=447

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 270/297 (91%), Gaps = 3/297 (1%)
 Strand=Plus/Plus

Query  110  ATGGCTTCAAAAGCATTGCtttttttAAGTCTCATTGTTGTTCTTCTTATAGCTTCTGAG  169
            |||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct  1    ATGGCTTCAAAAGCTTTGCTTTTTTTAAGTCTCATTGTTGTTCTTCTCATCGCGTCTGAG  60

Query  170  GTGGTAGCCAGAGACCTCGCTGAGAAATCGGCAGAGCAGAAAAACAATGAAAGAGACGAA  229
            ||||||||||||||||||||||| ||||| |||||| | ||||| ||||| |||||||||
Sbjct  61   GTGGTAGCCAGAGACCTCGCTGAAAAATCCGCAGAGTATAAAAAAAATGAGAGAGACGAA  120

Query  230  GTAAAGCAAACGGAGCAGTTTGGCGGGTTTCCaggaggagggtatggagggttcccggga  289
            ||||||||||| ||||||||||| ||||  || ||||||||||||||||||| |||||||
Sbjct  121  GTAAAGCAAACTGAGCAGTTTGGAGGGTACCCGGGAGGAGGGTATGGAGGGTACCCGGGA  180

Query  290  ggagggtatggaggaaaccctggtggaggatatggaAACCGTGGTGGTGGATATAGAAAC  349
            ||||||||||||||||||||||||||||| ||||||||||| |||||   |||| |||||
Sbjct  181  GGAGGGTATGGAGGAAACCCTGGTGGAGGGTATGGAAACCGCGGTGG---ATATGGAAAC  237

Query  350  CGTGATGGAGGATATGGAAACCGCGGTGGAGGATATGGAAACCGAGGAGGAGGATAT  406
            |||| |||||||||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct  238  CGTGGTGGAGGATATGGAAACCGCGGTGGTGGATATGGAAACCGTGGTGGAGGTTAT  294


 Score =  339 bits (183),  Expect = 2e-92
 Identities = 205/216 (95%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  302  ggaaaccctggtggaggatatggaAACCGTGGTGGTGGATATAGAAACCGTGATGGAGGA  361
            ||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| 
Sbjct  232  GGAAACCGTGGTGGAGGATATGGAAACCGCGGTGGTGGATATGGAAACCGTGGTGGAGGT  291

Query  362  TATGGAAACCGCGGTGGAGGATATGGAAACCGAGGAGGAGGATATTGTCGCTATGGTTGC  421
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||
Sbjct  292  TATGGAAACCGCGGTGGTGGATATGGAAACCGAGGAGGAGGATACTGTCGCTACGGCTGC  351

Query  422  TGCTACAGAGGCTACTACGGTGGCTGCTTCAGGTGTTGTGCTTATGCTGGTCAGGCTGTT  481
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  352  TGCTACAGAGGCTACTACGGTGGCTGCTCCAGGTGTTGTGCTTATGCTGGTCAGGCTGTT  411

Query  482  CAAACTCAGCCACAGAGTACTGAGCCGGGTCACTAA  517
            |||||||||||||||||||||||||| |||||||||
Sbjct  412  CAAACTCAGCCACAGAGTACTGAGCCTGGTCACTAA  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27867852327


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5