BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05580.1
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480174 jgi|Araly1|480174|fgenesh2_kg.3__2875__AT2G05580.1 440 9e-123
> Ahg480174 jgi|Araly1|480174|fgenesh2_kg.3__2875__AT2G05580.1
Length=829
Score = 440 bits (238), Expect = 9e-123
Identities = 390/459 (85%), Gaps = 28/459 (6%)
Strand=Plus/Plus
Query 124 AAGTTGGTGAAAAC-CAAGTGGAGGAGTCAAAGTCGACATGCAAGTATGGAAATTGTGCA 182
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 183 AAGTTGGTGAAAACTC-AGTGGAGGAGTCAAAGTCGACATGCAAGTACGGAAATTGTGCA 241
Query 183 CA-GTATGGAGAGAATCATTTTGTAGAAACAGATGAAGTCCTTGATGGGGAAGAAGAAGA 241
|| | ||||||||| || |||||||||| |||||||||||||| ||| | ||||||||
Sbjct 242 CATG-ATGGAGAGATTCCTTTTGTAGAAGTAGATGAAGTCCTTGGTGG--A-GAAGAAGA 297
Query 242 AGAATCCAAAAATAACCAAGGTGGAATTGGGAGAGGCCaaggaggacaaaaaggcggtgg 301
|||||||||| | |||||| ||||||||| ||||||||||||||||| || ||||||||
Sbjct 298 AGAATCCAAATCTGACCAAGTTGGAATTGGAAGAGGCCAAGGAGGACAGAAGGGCGGTGG 357
Query 302 tggtggtggccaaggaggacaaaaaggcggtggcggtggtggccaaggaggACAAAAGGG 361
||| || |||||||||||| || || | ||| ||||| |||||||||||||| |||||
Sbjct 358 TGGCGG---CCAAGGAGGACAGAA-GG-G-TGGTGGTGGCGGCCAAGGAGGACAGAAGGG 411
Query 362 TGGCGGTGGTGGCCAAGGAGGACAAAAGGGTGGCGGTGGTGGCCAAGGAGGACAAAAGGG 421
|| || || |||||||||||||| ||||| || || || |||||||||||||| |||||
Sbjct 412 CGGTGGCGGCGGCCAAGGAGGACAGAAGGGCGGTGGCGGCGGCCAAGGAGGACAGAAGGG 471
Query 422 CGGTGGCGGTGGTGGCCaagggggacagaagggcggtggcggtggtggacaagggggaca 481
||||||||| || |||||| |||||||||||||| ||||| ||||| |||||
Sbjct 472 CGGTGGCGGCGG---CCAAGGAGGACAGAAGGGCGGCGGCGGC------CAAGGAGGACA 522
Query 482 gaagggtggtggtgggggcggcCAAGGAGGACAGAAGGGTGGCGGGGGCCAAGGAGGACA 541
|||||| || || ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 523 GAAGGGCGGCGG------CGGCCAAGGAGGACAGAAGGGCGGCGGCGGCCAAGGAGGACA 576
Query 542 GAAGGGTGGCGGGGGCCAAGGAGGACAGAAGGGCGGCGG 580
|||||| ||||| |||||||| |||||||||||| ||||
Sbjct 577 GAAGGGCGGCGGCGGCCAAGGCGGACAGAAGGGCCGCGG 615
Score = 353 bits (191), Expect = 1e-96
Identities = 327/388 (84%), Gaps = 28/388 (7%)
Strand=Plus/Plus
Query 342 ggccaaggaggACAAAAGGGTGGCGGTGGTGGCCAAGGAGGACAAAAGGGTGGCGGTGGT 401
|||||||||||||| ||||| || ||||| |||||||||||||| |||||||| |||||
Sbjct 332 GGCCAAGGAGGACAGAAGGGCGGTGGTGGCGGCCAAGGAGGACAGAAGGGTGGTGGTGGC 391
Query 402 GGCCAAGGAGGACAAAAGGGCGGTGGCGGTGGTGGCCaagggggacagaagggcggtggc 461
|||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||
Sbjct 392 GGCCAAGGAGGACAGAAGGGCGGTGGC---GGCGGCCAAGGAGGACAGAAGGGCGGTGGC 448
Query 462 ggtggtggacaagggggacagaagggtggtggtgggggcggcCAAGGAGGACAGAAGGGT 521
|| || ||||| |||||||| | || ||||| |||||||||||||||||||||||
Sbjct 449 ---GGCGGCCAAGGAGGACAGAA--G-GGCGGTGGCGGCGGCCAAGGAGGACAGAAGGGC 502
Query 522 GGCGGGGGCCAAGGAGGACAGAAGGGTGGCGGGGGCCAAGGAGGACAGAAGGGCGGCGGT 581
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 503 GGCGGCGGCCAAGGAGGACAGAAGGGCGGCGGCGGCCAAGGAGGACAGAAGGGCGGCGGC 562
Query 582 GGCCAAGGAGGACAGAAGGGCGGCGGTGGCCGCGGCCAAGGAGGA-ATGAA-GG--GCGG 637
|||||||||||||||||||||||| | |||||||||| ||| | ||| || ||||
Sbjct 563 GGCCAAGGAGGACAGAAGGGCGGC----G--GCGGCCAAGGCGGACA-GAAGGGCCGCGG 615
Query 638 CGGTGGCGGCGGCCAAGGAGGACATAAG-GGCGG---C---GGAGGTGGTGGTGGCCAAG 690
|||||| || || |||||||| | | || || | || ||||||||||||||||
Sbjct 616 CGGTGGTGGTGGACAAGGAGGTGGT-GGTGGTGGACACAAAGGCGGTGGTGGTGGCCAAG 674
Query 691 GAGGACACAAAGGCGGTGGAGGTGGTGG 718
||||||||||||| || ||||| |||||
Sbjct 675 GAGGACACAAAGGTGGCGGAGGAGGTGG 702
Score = 200 bits (108), Expect = 2e-50
Identities = 120/126 (95%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1 GTCAATTAATTTTGCATGTTGCAAAGACAATGAAGATGAATTCGCGAGCTTTAATAGTTT 60
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1 GTCAATAAATTTTGCATGTTGCAAAGAAAATGAAGATGAATTCGCGAGCTTTAATAGTGT 60
Query 61 GGTTTCTATTGTTGTCGGCTGTTTTCGCCATCAAGGTTGTTGCCTCCATCGATGACACAA 120
||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 61 GGTTTCTATTGTTGTCGGCAGTTTTCGCCATCACGGTTGTTGCCTCCGTCGATGACACAA 120
Query 121 AACAAG 126
||||||
Sbjct 121 AACAAG 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5