BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05590.2
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480175 jgi|Araly1|480175|fgenesh2_kg.3__2876__AT2G05590.2 1404 0.0
> Ahg480175 jgi|Araly1|480175|fgenesh2_kg.3__2876__AT2G05590.2
Length=1250
Score = 1404 bits (760), Expect = 0.0
Identities = 1111/1271 (87%), Gaps = 62/1271 (5%)
Strand=Plus/Plus
Query 1 ATCTCCGAGCATCTGGCTTCTCTGT--C-GCATC-TTCTCTTCCCTTTCCCCCACCGAC- 55
|||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||
Sbjct 1 ATCTCCTAGCATCTGGCTTCTCTGTCGCAGCATCTTTCTCTTCCCTTT-CCCCACCGACA 59
Query 56 A----ATT--C-T-ATTCATCTCCGATCAAAAACTATTCCTTTCTGATCACAATGCATGC 107
| ||| | | ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 60 ATTCTATTGACATCATTCATCTCCGATCAAAAACTCCT-CTTTCTGATCACAATGCATGC 118
Query 108 TCTCAAGGACAAAGTCTCACAAAAACTCTCTAATCTCTTCGCCGATTCTCCAAGCCAATC 167
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 119 TCTCAAGGACAAAGTCTCACAAAAACTTTCCAATCTCTTCGCCGATTCCCCAAGCCAATC 178
Query 168 TGCTTCTCCTCGTTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGG 227
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGCTTCTCCTCGCTATTCCAACTCCGATTCTCCAAAGGCTAGGTTGAATTCAAGTGTAGG 238
Query 228 CAAATCATTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAACGAGGAGGATTC 287
|||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 239 CAAATCGTTGTCTTCGTATTTCTCATTTGTTGTTCCTCAATCTGGGAATGATGATGATTC 298
Query 288 TGAGTTATGTCCACCTCTACCCATTAGAACAGAGAGCTATGAGTGTATTGAGAATTGCAA 347
||| | ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 299 TGAATCATGCCCACCTCTACCCATTAGAACAGAAAGCTATGAGTCTATTGAGAATTGCAA 358
Query 348 ATCTGCTAATGGGCAAGCTAAAGCTGGAACCTTTATCTCAATTGGTGAAGATAAGGATTG 407
||||| |||||||| | | ||||||| ||||||| || | ||||||||||||
Sbjct 359 ATCTGGAAATGGGCATGATCAAGCTGGGACCTTTA-AGGAA----T-CAGATAAGGATTG 412
Query 408 TGAGTTACGTGTTTCTGCGAAAGTAGAAGAAAGTGGTAATGATTACTTTGAT-GGGGTGA 466
|||||||||||||||||||||||| |||||||| ||||| ||||||||| | |||||||
Sbjct 413 TGAGTTACGTGTTTCTGCGAAAGTCGAAGAAAGCGGTAACGATTACTTT-CTAGGGGTGA 471
Query 467 AGAAGATGAGGGAATTAACAG-AGAGCTCTGTGTTTATTACTGCTAACTTGTTTGAATTC 525
|| |||||||||||||||| | || ||||||| ||||||||||||||||||| |||||||
Sbjct 472 AGCAGATGAGGGAATTAACGGAAG-GCTCTGTTTTTATTACTGCTAACTTGTGTGAATTC 530
Query 526 TTGCATGCGAGTCTTCCTAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACG 585
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGCATGCGAGTCTTCCGAATATTGTAAGAGGATGCAAATGGATCTTGTTGTATAGTACG 590
Query 586 TTGAAACATGGTATATCACTTCGTACGCT-TTTGCGAAGAAGTGGAGAGCTTCCTGGTCC 644
||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 591 TTGAAACATGGCATATCACTTCGTACGCTGCTT-CGAAGAAGCGGAGAGCTTCCTGGTCC 649
Query 645 TTGTTTACTGGTTGCTGGAGACAAACAAGGTGCAGTGTTTGGAGCTCTGTTGGAA-TGTC 703
||||||||||||||||||||||||| ||||||| || ||||| |||||| ||||| | ||
Sbjct 650 TTGTTTACTGGTTGCTGGAGACAAAAAAGGTGCGGTTTTTGGCGCTCTGCTGGAATTTTC 709
Query 704 C--ACTGCAACCTACTCCT-A-A-G--AGGAAAT-ATCAGGGTACAAGCCAGACATTCTT 755
| | ||| | ||| | | | | || || ||||||||||||||||||||||
Sbjct 710 CTTATTGC-TGATTCTCTTCACATGTTTTTTGATGAT-AGGGTACAAGCCAGACATTCTT 767
Query 756 GTTCACAACTATTTATGGTGAACCACGCATATTTA-GACCTACCGGTGCCA-ACCGATAT 813
||||||||||||||||| | | | | | |||| || | || ||| | |||
Sbjct 768 GTTCACAACTATTTATGCAG-AGTA-ACTTGTTTAGGA--GA--AGTTCCAGAAGGAT-G 820
Query 814 TACC-TGA-TG-TGTATGAATGA-ATTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACT 869
||| | | || | | || |||| |||||||||||||||||||||||||||||||||||
Sbjct 821 CACCTTTACTGTTTTTTGGATGACTTTTTTGGCGTTTGGAGGTGGAGGAAACTTTGCACT 880
Query 870 ATGTTTAGACGAAGATTTGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 ATGTTTAGACGAAGATTTGTTGAAGGCAACAAGTGGACCTTCTGAAACATTTGGGAACGA 940
Query 930 ATGTTTGGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGCTCTGGGGATTTGCACA 989
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 941 ATGCTTAGCTAGCAGCACGGAGTTTGAGTTAAAGAATGTCGAGCTCTGGGGGTTTGCGCA 1000
Query 990 TGCGTCTCAATACCTCTCGTA---ATCTTGGAGATCCCTTACTTTGTCGAGAATCAAGAT 1046
||| |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||
Sbjct 1001 TGCATCTCAATACCTCTCCTCCTGATCTTGGAGATCCCTTTCTTTGTCAAGAATCGAGAT 1060
Query 1047 AACTCAATAGAAAGAAAAGCTTACTA-TCGTTTTTTAATCAGTTAATTGTTT-CAAAGTT 1104
| |||||||||||||||||||||| | |||||||| |||| ||||||||||| |||| ||
Sbjct 1061 ACCTCAATAGAAAGAAAAGCTTAC-AGTCGTTTTTCAATCCGTTAATTGTTTTCAAACTT 1119
Query 1105 ATGATTAGGCTTAAG-ACACTTTCTCA-GGCTTTAATCTGTTGAAAGAGTGACAATATTA 1162
||||||||||||||| ||| ||| | | ||||||||||||||||||||||| |||||| |
Sbjct 1120 ATGATTAGGCTTAAGGACAGTTTTTTAAGGCTTTAATCTGTTGAAAGAGTGCCAATATAA 1179
Query 1163 TATGTTTGTATCATCTGTGAATT---ACTGAGAATACTAATTCAGCTAAGACCTTATTGA 1219
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1180 CATGTTTGTATAATCTGTGAATTTTTAATGAGAATACTAATTCAGCTAAGACCTTATTGA 1239
Query 1220 ACATTTATTTG 1230
||| || ||||
Sbjct 1240 ACACTTGTTTG 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5