BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05642.1
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322576 jgi|Araly1|322576|fgenesh1_pm.C_scaffold_5000120 776 0.0
Ahg907670 jgi|Araly1|907670|Al_scaffold_0002_751 278 1e-73
> Ahg322576 jgi|Araly1|322576|fgenesh1_pm.C_scaffold_5000120
Length=1560
Score = 776 bits (420), Expect = 0.0
Identities = 525/574 (91%), Gaps = 13/574 (2%)
Strand=Plus/Plus
Query 915 ATTCG-GGAGGGGCATGTAATATTATTGCATCAATATTCTCCATTGACACAAAAGTTCCA 973
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 784 ATTCGTGGAGGGGCATGTAACATTATTGCATCAATATTCTCCATCGACACAAAAGTTCCA 843
Query 974 TGGTTTTATATTGGTTGTAATATATGTTTCAAAAAAGTATCTCCTTATTTCAACCCTGAA 1033
||||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||
Sbjct 844 TGGTTTTATATTGGTTGTACTAAATGTTTCAAGAAAGTATCTCCTTACTTCAACCCTGAA 903
Query 1034 ACTGAAGAAATAGAAGCTGGAAAATATGAATGTGAAAAATGTGACACATTTGTTACTACT 1093
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 904 ACTGAAGAAATAGAAGCAGGAAAATATGAATGTGAAAAATGTGACACATTTGTAACTACT 963
Query 1094 ACAAGCACCAGGTTCAGGGTGCAAGTTACAGTTCTTGACCATACTGGGGA-AGCATCATT 1152
||||||||||||| || |||||||| |||||| ||||||||||| || | ||||||||
Sbjct 964 ACAAGCACCAGGTACAAGGTGCAAGCAACAGTTATTGACCATACT-GGTAGCGCATCATT 1022
Query 1153 TCTTCTTTTCGATCAGGATGTCATCAAGCTCATTCACAAATCCGCATATGAATTGCTCGA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1023 TCTTCTTTTCGATCAGGATGTCATCAAGCTCATTCACAAATCCGCATATGAGTTGCTCGA 1082
Query 1213 GCAACAAGTTCAGTTTAATCGTTCCGACAAAATTCCTCAAGAGCTGCTTGATTTAGAAGG 1272
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||
Sbjct 1083 GCAACAAGTTCAGTTTAATCGTTCAGACCAAATTCCGCAAGAGCTGCTTGATTTACAAGG 1142
Query 1273 GCGTCAATTTGTTTTCACGATACAAGGTTCAGACTCAACCAAATTCAGC-CGACCA-TCT 1330
|| |||||||||||||| |||||||||||||||||| |||||||||| | | || | |||
Sbjct 1143 GCTTCAATTTGTTTTCAAGATACAAGGTTCAGACTCGACCAAATTCAACTC-AC-AGTCT 1200
Query 1331 ATCTTT-AGGGT-TTATGAACTTACGGACAAACCCGAAATTGTTCAAAAGTTTCAGGAAA 1388
| | || || || || ||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1201 A-CGTTCAGAGTATT-TGAACTTACTGACAATCCCGAAATTGTTCAAAAGTTTCAGGATA 1258
Query 1389 AT-TTATTGCAAATGAACACAACTGATCCAAACACTCACATGGTCTCAAGCTTTTCAAAC 1447
|| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATATT-TTGCAAGTGAACAAAACTGATCCAAACACTCACATGGTCTCAAGCTTTTCAAAC 1317
Query 1448 TCAACTACCAGCGAGACTGAACCTGATTCAGACA 1481
|||||| ||||||| |||||||||||| ||||
Sbjct 1318 CCAACTATGAGCGAGATTGAACCTGATTCGGACA 1351
Score = 704 bits (381), Expect = 0.0
Identities = 478/525 (91%), Gaps = 6/525 (1%)
Strand=Plus/Plus
Query 125 ATGCCGCTGGAAATAACACCGGTTTCACAGCTGCA-TTCTCACCTGTCAACGTGCAAAGT 183
|||||||| ||| ||||||| ||||||||||| | || | |||| ||||| ||||||||
Sbjct 1 ATGCCGCTAGAAGTAACACCAGTTTCACAGCT-TAGTTTTGACCTCTCAACATGCAAAGT 59
Query 184 GAAAGTTCGAATTGCTCG-GTTATGGGCATACCACAAAAAAGACAGACCCAAAGATATTA 242
||||| || |||||||| | | ||||||||||| |||||||| |||| |||||||||||
Sbjct 60 TAAAGTCCGGATTGCTCGCG-TCTGGGCATACCATAAAAAAGATAGACTCAAAGATATTA 118
Query 243 TGGGAATAGACCTTCTATTGGTGGATGACAAGGGAGAGAGGATACAAGCCTCCATCAGAT 302
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 CGGGAATAGACCTTCTCCTGGTGGATGACAAGGGAGACAGGATACAAGCCTCCATCAGAT 178
Query 303 CGCAATTACTTTCAAAATTTC-AGGAGAAACTAGAAGAGGGAGATTGCTACATGATTATG 361
||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 179 CGCAATTACTTACAAAATTCCAAGGA-AAACTAGAAGAGGGAGATTGCTACATGATTATG 237
Query 362 AACTTTGAGATTTCAGATAATGGAGGGAGTTATAGAGCCAGTTCTCACCCCTACAAGATC 421
||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 AACTTTGAGATTTTATATAATGGAGGTAGTTATAGAGCCAGTTCTCACCCCTACAAGATC 297
Query 422 AACTTCATGTCCATGACACACATCATTGGAATGCAAGAACTTAAAGAGGTTAATGTTTCA 481
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 298 AACTTCATGTCCATGACACACATAATTGGAATCCATGAACTTAAAGAGGTTAATGTTTCG 357
Query 482 GGGCGACAAACAAAGTTATTAAATTTACAGCTTAGAGATCTTGGAGAATCAGTCATCGAT 541
||| | || || |||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 358 GGGAGGCAGACCAAGTTATTGAATTTACAGCTGAGAGATCTTGGGGAATCAGTCATCGAT 417
Query 542 GTTACTTTGTGGGAAAAATGGGCAGAAGATCTGTACTCTTATGTTAAGGGCTACAAAGAT 601
|||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 418 GTTATTTTGTGGGGAAAATGGGCAGAAGATTTGTACTCTTATGTTAAGGGCTATAAAGAT 477
Query 602 GGTTCAATTGTTTTAGTTGGAAGCTTGATGAAGATAAAGACATAT 646
|||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 478 GGTTCAATTGTTTTAGTTGGAAGCTTGATGAAGACAAAGCCATAT 522
Score = 291 bits (157), Expect = 2e-77
Identities = 196/214 (92%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 1514 ACA-AATCA-GATTGACACTGA-ATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCG 1570
||| ||||| ||||||| | | |||||||||||||||||| ||||||||||||||| ||
Sbjct 1349 ACACAATCACTATTGACAGT-ACATCTTCCGAGGCGGCTAATTATGAAAACAGCAACACG 1407
Query 1571 TCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAAATTGACTCCAACGTCAAAACGA 1630
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1408 TCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAATTTGACTACGACGTCAAAACGA 1467
Query 1631 GCACTAACTTCATCGAAAGATAATGCAGCTCAAAAGTCATCTACAAAGCCTAAATTGTTG 1690
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1468 TCACTAACTTCATCGGAAGATAATGCAGCTCAACAGTCATCTACAAAGCCTAAATTGTTG 1527
Query 1691 TCCAAGGCTGAGATAAAGAAAGaaaa-aaaGTGA 1723
|||||||| ||||| ||||||||||| ||| |||
Sbjct 1528 TCCAAGGCCGAGATTAAGAAAGAAAAGAAA-TGA 1560
Score = 265 bits (143), Expect = 1e-69
Identities = 185/205 (90%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 717 ATCTCTGTCCAAAAT-CATCATTTTCGACCAAGCTCTTTATCAATTCCTCAATTGCCGAG 775
|||||||| |||||| | ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 553 ATCTCTGTACAAAATGCTTCATTTTCGACCAAGCTGTTTATCAATTCCCCAATTGCCGAG 612
Query 776 ATAACTGAGTTTAAAGAAAGTTTGGCCAAATCTGATTGTTTAGCTTTAACAACGATTTCA 835
||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 613 ATAACAGAGTTTAAAGAAAGTTTGGCCAAATCTGATCATTTAGCTTTAACTACGATTTCA 672
Query 836 ACAATTACGTCTTCAAGTTCAAGCAAGCATTCAAAACCTTCATTCTCTTTG-CGAGATCA 894
||||||||||||||||| ||||||||| |||| ||| |||||||||| ||| | | ||||
Sbjct 673 ACAATTACGTCTTCAAGCTCAAGCAAGAATTCTAAAGCTTCATTCTCCTTGGCAA-ATCA 731
Query 895 AAAAACGATTGCAGATATAAATTCG 919
|||||| ||||||||||| |||||
Sbjct 732 AAAAACAATTGCAGATATTCATTCG 756
> Ahg907670 jgi|Araly1|907670|Al_scaffold_0002_751
Length=231
Score = 278 bits (150), Expect = 1e-73
Identities = 208/235 (89%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 125 ATGCCGCTGGAAATAACACCGGTTTCACAGCTGCATTCTC-ACCTGTCAACGTGCAAAGT 183
|||||||| ||| ||||||| ||||||||||| |||| | |||| ||||| ||||||||
Sbjct 1 ATGCCGCTAGAAGTAACACCAGTTTCACAGCTTAATTC-CGACCTCTCAACATGCAAAGT 59
Query 184 GAAAGTTCGAATTGCTCG-GTTATGGGCATACCACAAAAAAGACAGACCCAAAGATATTA 242
||||| || |||||||| | | ||||||||||| |||||||| ||||||| ||||||||
Sbjct 60 TAAAGTCCGGATTGCTCGCG-TCTGGGCATACCATAAAAAAGATAGACCCAGAGATATTA 118
Query 243 TGGGAATAGACCTTCTATTGGTGGATGACAAGGGAGAGAGGATACAAGCCTCCATCAGAT 302
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 CGGGAATAGACCTTCTCCTCGTGGATGACAAGGGAGATAGGATACAAGCCTCCATCAGAT 178
Query 303 CGCAATTACTTTCAAAATTTCAGGAGAAA-CTAGAAGAGGGAGATTGCTACATGA 356
||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 179 CGCAATTACTTACAAAATTTCAGG-GAAAACTAGAAGAGGG-GATTGCTACATGA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70962126435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5