BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05645.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896243 jgi|Araly1|896243|Al_scaffold_0005_209 278 4e-74
Ahg896230 jgi|Araly1|896230|Al_scaffold_0005_196 278 4e-74
> Ahg896243 jgi|Araly1|896243|Al_scaffold_0005_209
Length=594
Score = 278 bits (150), Expect = 4e-74
Identities = 362/460 (79%), Gaps = 32/460 (7%)
Strand=Plus/Minus
Query 4 AAGGTGGATGCTTTGATTTCCGGTCCTAGAGTCTCGCATCTCAAGC-GTTG-G-AAGCTT 60
|||||||| ||| |||||| ||||||||| ||||||||||| |||| | | | |||||
Sbjct 447 AAGGTGGAGGCTGTGATTTTCGGTCCTAGCGTCTCGCATCTTAAGCTGCGGAGCAAGCTG 388
Query 61 TTGTTTGTAGATCTGTTTTGGGGT-GCCTTCTTTCTGGTGTTTCA-GGTGGTCGAGCGTG 118
||||||||||||||| | | | |||||||| ||||||||| | | | |||||| |||
Sbjct 387 TTGTTTGTAGATCTG-TCCCAGATCGCCTTCTTCCTGGTGTTT-ACGATCGTCGAGAGTG 330
Query 119 CTTTCCTAT-GCTGT--AAT---GTGGTGTCGCCTCTCCTCCTT-AAC-CGGTCACATTT 170
||| ||| | ||||| | |||||||||| |||||| ||| | ||| | |||||
Sbjct 329 CTTCCCT-TGGCTGTGCCGTGCCGTGGTGTCGCTTCTCCT-CTTCTGCTCGGACTCATTT 272
Query 171 TTTCCAAGATCTCTCTTGGTCTAACCCCTGCATTTT-GGCTCTTGCCTGCTGGAGTTATG 229
|||||||||||||||||||||||||| | | ||| ||||| || |||| ||||| ||
Sbjct 271 TTTCCAAGATCTCTCTTGGTCTAACCG-TCCCGTTTCGGCTCGTGTCTGCCGGAGTCCTG 213
Query 230 GGTTTCTTTGTGTCGAGTTGTTCGCATTGAGGACAACTTACTCCCACACGCTTAAAGCTT 289
|||||| ||||||| ||||||||| ||||||||| ||||||||||||||| |||| |
Sbjct 212 GGTTTCACTGTGTCGGGTTGTTCGCCTTGAGGACAGCTTACTCCCACACGCCGGAAGCCT 153
Query 290 TTGTCCACTTTGTACGTGTTGATTTTGTGTGTTGGAGTTTGAATCGAGAGGTTTTCTTTG 349
|||||||| || ||||| ||||| |||||||||||||| |||||| ||| ||||||||
Sbjct 152 CTGTCCACTCCGTGCGTGTCGATTTCGTGTGTTGGAGTTTCAATCGAAAGGCTTTCTTTG 93
Query 350 G-TGTTGTGGATGGTTCGCCATCAT--TGGTTAGGGTTGTCCATCGACCCTTT-GTGCTT 405
| | || ||||||||| | || | | || || ||||| || |||||||| | ||||
Sbjct 92 GCTCTT-TGGATGGTTTGGCAGCCTCCTG-TTGGGGTT-TC----GACCCTTTTGAGCTT 40
Query 406 TTGATGCCTC-GACCTCTCCTCTCTAGCCCTCATTCGCAT 444
|||| |||| | |||||| | | | |||||| |||||||
Sbjct 39 CTGATTCCTCAG-CCTCTCTTTTGTGGCCCTCCTTCGCAT 1
> Ahg896230 jgi|Araly1|896230|Al_scaffold_0005_196
Length=594
Score = 278 bits (150), Expect = 4e-74
Identities = 362/460 (79%), Gaps = 32/460 (7%)
Strand=Plus/Minus
Query 4 AAGGTGGATGCTTTGATTTCCGGTCCTAGAGTCTCGCATCTCAAGC-GTTG-G-AAGCTT 60
|||||||| ||| |||||| ||||||||| ||||||||||| |||| | | | |||||
Sbjct 447 AAGGTGGAGGCTGTGATTTTCGGTCCTAGCGTCTCGCATCTTAAGCTGCGGAGCAAGCTG 388
Query 61 TTGTTTGTAGATCTGTTTTGGGGT-GCCTTCTTTCTGGTGTTTCA-GGTGGTCGAGCGTG 118
||||||||||||||| | | | |||||||| ||||||||| | | | |||||| |||
Sbjct 387 TTGTTTGTAGATCTG-TCCCAGATCGCCTTCTTCCTGGTGTTT-ACGATCGTCGAGAGTG 330
Query 119 CTTTCCTAT-GCTGT--AAT---GTGGTGTCGCCTCTCCTCCTT-AAC-CGGTCACATTT 170
||| ||| | ||||| | |||||||||| |||||| ||| | ||| | |||||
Sbjct 329 CTTCCCT-TGGCTGTGCCGTGCCGTGGTGTCGCTTCTCCT-CTTCTGCTCGGACTCATTT 272
Query 171 TTTCCAAGATCTCTCTTGGTCTAACCCCTGCATTTT-GGCTCTTGCCTGCTGGAGTTATG 229
|||||||||||||||||||||||||| | | ||| ||||| || |||| ||||| ||
Sbjct 271 TTTCCAAGATCTCTCTTGGTCTAACCG-TCCCGTTTCGGCTCGTGTCTGCCGGAGTCCTG 213
Query 230 GGTTTCTTTGTGTCGAGTTGTTCGCATTGAGGACAACTTACTCCCACACGCTTAAAGCTT 289
|||||| ||||||| ||||||||| ||||||||| ||||||||||||||| |||| |
Sbjct 212 GGTTTCACTGTGTCGGGTTGTTCGCCTTGAGGACAGCTTACTCCCACACGCCGGAAGCCT 153
Query 290 TTGTCCACTTTGTACGTGTTGATTTTGTGTGTTGGAGTTTGAATCGAGAGGTTTTCTTTG 349
|||||||| || ||||| ||||| |||||||||||||| |||||| ||| ||||||||
Sbjct 152 CTGTCCACTCCGTGCGTGTCGATTTCGTGTGTTGGAGTTTCAATCGAAAGGCTTTCTTTG 93
Query 350 G-TGTTGTGGATGGTTCGCCATCAT--TGGTTAGGGTTGTCCATCGACCCTTT-GTGCTT 405
| | || ||||||||| | || | | || || ||||| || |||||||| | ||||
Sbjct 92 GCTCTT-TGGATGGTTTGGCAGCCTCCTG-TTGGGGTT-TC----GACCCTTTTGAGCTT 40
Query 406 TTGATGCCTC-GACCTCTCCTCTCTAGCCCTCATTCGCAT 444
|||| |||| | |||||| | | | |||||| |||||||
Sbjct 39 CTGATTCCTCAG-CCTCTCTTTTGTGGCCCTCCTTCGCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5