BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05755.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480191 jgi|Araly1|480191|fgenesh2_kg.3__2892__AT2G05755.1 2032 0.0
> Ahg480191 jgi|Araly1|480191|fgenesh2_kg.3__2892__AT2G05755.1
Length=1326
Score = 2032 bits (1100), Expect = 0.0
Identities = 1260/1336 (94%), Gaps = 16/1336 (1%)
Strand=Plus/Plus
Query 11 GTTTTCGTAGCCATGGCTTCTTCGTCTCCGGAGACCAGAATCGCCGACGAACACCTCTCC 70
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 3 GTTTTCGTAGCCATGGCTTCTTCCTCTCCGGAGACCAGAATCACCGACGAACACCTCGCC 62
Query 71 CTTGAGCTTACCGTTCGCGATCTAGAATCTACGGCGTTAGAAAG-CGCCTCCTCCGCCCC 129
|||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 63 CTTGAGCTTACCGTTCGCGATCTAGAATCTCCGGCGTTAG-AAGACGCCTCCTCCGCCCC 121
Query 130 TGAATTATCTTCCGACGAAATTATCCCTCTCCTGAATCAAAACCAAAGACCTAGAATCAA 189
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGACTCATCTTCCGACGAAATCATCCCTCTCCTGAATCAAAACCAAAGACCTAGAATCAA 181
Query 190 CATCTTCTCCGCCTCCTACACTCGACGCAAACCAAGTGAGCAAGTGATTAAAGTGACTGA 249
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct 182 CATCTTCTCCGCTTCCTATACTCGACGCAAACCAAGAGAGCAAGTGATTAAAGTAACAGA 241
Query 250 AACTGAGATATCACCTGTAACTCAGTTTTCTTCATGGATTTGGAGTGGTTCTCGTTACTC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AACTGAGATATCACCTGTAACTCAGTTTTCTTCATGGATTTGGAGTGGTTCTCGTTACTC 301
Query 310 TGGCTTACTGTGTATGGCATTGTCATCTACATTGTATCTGATCATGGAGTTAGTTTCAGA 369
||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 302 TGGCTTACTGTGTATGGTGTTGTCATCGACACTGTATCTCATCATGGAGTTAGTTTCAGA 361
Query 370 TACTTTTTCTGTTCAGCCAATTCCTTTGTTTGAGACCGCGTTCATGAGATGCACAATTAT 429
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TACTTTTTCTGTTCAGCCGATTCCTTTGTTTGAGACCGCGTTCATGAGATGCACAATTAT 421
Query 430 CTTGATACTGTCATACCTTTGGTTGAAAAGAATTGGGCAACCGATATTTGGACCTGCTCA 489
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 422 CTTGATACTGTCATACCTTTGGTTGAAAAGAATTGGACAACCAATTTTTGGACCTGCGCA 481
Query 490 TGCAAGGAAGCTTTTGGTTTCAAGAGCCCTCGTGGGTTATCTTTCATTGTTTAGTTTCAT 549
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 482 TGCCAGGAAGCTTTTGGTTTCAAGAGCCCTTGTGGGTTACCTTTCATTGTTTAGTTTCAT 541
Query 550 CTTTAGCATTCAAATGTTGCCGTTGTCCCAAGCTATTGTACTAAGCTTCTTGAATCCAAT 609
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTTTAGCATTCAAATGTTACCGTTGTCCCAAGCTATTGTACTAAGCTTCTTGAATCCAAT 601
Query 610 TATGGCTTCCATTGCAGCACGTGTTGTTATGCATGAGAAGTTGAAAATAACTGATATTGG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 TATGGCTTCCATTGCAGCACGTGTTGTTATGCATGAGAAGTTGAAAATAACTGATATCGG 661
Query 670 AGGTCTTGCTTGCAGTTTCTTTGGCGTGCTTTTTATTTTTGGCCCAACACTTACTGTCCA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGGTCTTGCTTGCAGTTTCTTTGGCGTGCTTTTTATTTTTGGCCCAACACTTACTGTCCA 721
Query 730 AGTTGGATTAGAAGGAAAGAATGAAAACCTTAAAGGAAACCATCATATTTATGCGTTCTT 789
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 722 AGTTGGATCAGAAGGAACGAATGAAAATCTTAAAGGAAACCATCATATTTATGCATTCTG 781
Query 790 GTTGGGTTTATTTTCATCAATCACTGGAGGAATCACCTATTGTCTCATAAAGGCAGCCGC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 GTTGGGTTTATTTTCATCAATCACTGGAGGAATCACCTATTGTCTCATAAAGGCAGCTGC 841
Query 850 TAAAGCATCGGAACAGCCAGTGATTACTGTCCTCTCTTTTGGCTTGGTAGCTTGCCCCGC 909
||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 842 TAAAGCATCGGAACAGCCAGTGATTACTGTCTTCTCGTTTGGTTTGGTAGCTTGCCCCGC 901
Query 910 TACAGCAATTTGCATGTTTTCCTTCGAGAGCTTCGTGCTGCCAGCATTTGACACGCTCGT 969
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 902 CGCAGCAATTTGCATGTTTTCCTTCGAGAGCTTTGTGCTGCCAGCGTTTGACACGCTCAT 961
Query 970 TAGCATGATTGTGCTAGGGTTGCTAGCGTTTTGCGCAGAGGTACTTTTGGCACGTGGTCT 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TAGCATGATTGTGCTAGGGTTGCTAGCGTTTTGCGCAGAGGTACTTTTGGCACGTGGTCT 1021
Query 1030 TCAGCTTGAGAAAATCAGCAAAGCTGCTAACGTATTGTACATCGAGGTGGTTTTATCGCA 1089
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1022 TCAGCTTGAGAAAATCAGCAAAGCGGCAAACGTATTGTACATCGAGGTGGTGTTATCGCA 1081
Query 1090 GTTATGGTTAGTCAGCACGGGAAAAACAGGATCGCCAGGTTTGTTTAGCCGGCTTGTTGG 1149
||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1082 GTTATGGATAGTCAGCACGGGAAAAGCAGGATCACCAGGTTTGTTTAGCCGGCTTGTTGG 1141
Query 1150 GTGTTTGCTCATTCTCCTATCGGTAGGCTACACAGTTTACATCGGACCTGCCAAAGATAC 1209
||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1142 ATGTTTGCTCGTTCTCATATCGGTAAGCTACACAGTTTACATGGGACCTGCCAAAGATAC 1201
Query 1210 TGAGTCATCAATACCATAGAAGTGT--T-CCATTCTTTTCTCAtttttttACTATGCTTC 1266
|||||| ||||||| ||||||||| | |||||||||| ||||||||| |||| ||||
Sbjct 1202 CGAGTCACCAATACCGTAGAAGTGTAATTCCATTCTTTT-TCATTTTTTGACTACACTTC 1260
Query 1267 TTGTTTGAGGCAATGCAAACGCCACACTCCCCATTTCACATTTCTGAGTATAAAATTTCA 1326
|||||||| ||||||||||| | | | ||||||||||| ||||||||||||||||
Sbjct 1261 TTGTTTGATGCAATGCAAAC-C-A-A------ATTTCACATTT-TGAGTATAAAATTTCA 1310
Query 1327 TTGATTTTCGTTTGCC 1342
||||| ||||||||||
Sbjct 1311 TTGATCTTCGTTTGCC 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5