BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05760.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480192 jgi|Araly1|480192|fgenesh2_kg.3__2893__AT2G05760.1 2477 0.0
> Ahg480192 jgi|Araly1|480192|fgenesh2_kg.3__2893__AT2G05760.1
Length=1725
Score = 2477 bits (1341), Expect = 0.0
Identities = 1598/1718 (93%), Gaps = 33/1718 (2%)
Strand=Plus/Plus
Query 60 ATGGCGGAGATAAGTCATCCTCCAATGGAACAGCTTCAAGACCTTGAATATTGCATCGAC 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 ATGGCGGAGATTAGTCATCCTCCAATGGAACAGCTTCAAGACCTTGAATATTGCATCGAC 96
Query 120 TCTAACCCTCCTTGGCCCGAGACGGTGTTACTAGCATTCCAAAACTACATACTAATGCTT 179
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||| ||||
Sbjct 97 TCTAATCCTCCTTGGCCTGAAACGGTGTTACTAGCATTCCAAAACTACATTCTAACGCTT 156
Query 180 GGAACAAGTGCTTTTATACCCGCATTGCTCGTTCCAGCTATGGGTGGCTCTGATGGGGAC 239
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 157 GGAACAAGTGCTTTTATACCCGCATTGCTCGTCCCTGCTATGGGTGGCTCTGATGGGGAC 216
Query 240 AGAGCGCGGGTTATACAGACATTACTCTTTGTAGCTGGTATCAAAACACTTCTTCAAGCT 299
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGGGCGCGGGTTATACAGACTTTACTCTTTGTAGCTGGTATCAAAACACTTCTTCAAGCT 276
Query 300 CTCTTTGGTACAAGGTTGCCTGCTGTTGTTGGAGGCTCTCTTGCTTATGTTGTCCCTATT 359
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 277 CTTTTTGGTACGAGGTTGCCTGCTGTTGTTGGAGGCTCTTTTGCTTATGTTGTCCCTATT 336
Query 360 GCTTATATCATCAATGACTCTTCTTTGCAAAAGATATCTAATGATCATGAGAGATTTATT 419
||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 337 GCTTACATTATCAATGACTCTTCTTTGCAAAAGATTTCCAATGATCATGAGAGATTTATT 396
Query 420 CATACAATGCGTGCTATACAAGGGGCGTTGATTGTAGCATCAAGCATACAGATTATTCTA 479
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 397 CATACGATGCGTGCTATACAAGGGGCGTTGATTGTAGCATCGAGCATACAGATTATTCTT 456
Query 480 GGATATAGCCAAGTTTGGGGTCTTTTCTCAAGGTTCTTCAGTCCTCTAGGAATGGCACCG 539
|| || |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 457 GGTTACAGCCAAGTATGGGGACTTTTCTCAAGGTTTTTCAGTCCTCTAGGAATGGCACCG 516
Query 540 GTTGTCGGATTGGTTGGTCTCGGGATGTTTCAGCGAGGATTTCCTCAGCTCGGGAACTGC 599
||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 517 GTTGTTGGATTAGTAGGTCTCGGGATGTTTCAGCGAGGAGTTCCTCAGCTCGGGAACTGC 576
Query 600 ATCGAGATTGGACTACCGATGCTATTGCTTGTCATTGGACTAACCCAATATCTAAAACAT 659
|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 577 ATTGAGATTGGACTACCGATGTTATTGCTTGTCATCGGACTAACCCAATATCTAAAACAT 636
Query 660 GTTAGACCATTTAAAGATGTCCCAATCTTTGAAAGATTTCCGATATTGATCTGTGTTA-C 718
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 637 GTCAGACCATTTAAAGATGTCCCAATCTTTGAAAGATTTCCGATATTGATCTGTG-TAGC 695
Query 719 AATTGTTTGGATCTACGCTGTAATTCTGACCGCAAGTGGTGCTTATAGAGGCAAACCATC 778
||||||||||||||| || ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 696 AATTGTTTGGATCTATGCCGTAATTCTGACTGCAAGTGGAGCTTACAGAGGCAAACCATC 755
Query 779 ACTTACACAGCATAGTTGTCGAACAGACAAAGCTAATCTTATTTCAACAGCTCCATGGTT 838
||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||| |
Sbjct 756 ACTCACACAGCATAGTTGTCGAACAGACAAAGCAAATCTTATATCCACAGCTCCATGGGT 815
Query 839 TAAGTTTCCATACCCTCTCCAGTGGGGACCTCCTACATTTTCAGTAGGCCATTCGTTTGC 898
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 816 TAAGTTTCCATACCCACTCCAATGGGGGCCTCCAACATTTTCAGTAGGCCATTCGTTTGC 875
Query 899 TATGATGTCTGCGGTTCTTGTATCCATGGTCGAGTCTACTGGAGCTTACATTGCGGCTTC 958
|||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 876 TATGATGTCTGCAGTTCTTGTATCCATGATCGAGTCAACTGGAGCTTACATGGCGGCTTC 935
Query 959 AAGATTAGCTATAGCCACGCCGCCTCCTGCTTATGTATTGAGTAGAGGCATTGGATGGCA 1018
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AAGATTAGCCATAGCTACGCCGCCTCCTGCTTATGTATTGAGTAGAGGCATTGGATGGCA 995
Query 1019 GGGCATTGGTGTATTGCTTGATGGTCTATTTGGAACAGGCACAGGCTCTACTGTTCTAGT 1078
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| | ||
Sbjct 996 GGGCATTGGTGTGTTGCTTGATGGTCTATTCGGAACAGGCACAGGTTCTACTGTTTTGGT 1055
Query 1079 TGAAAATGTAGGACTTCTAGGGTTAACAAGAGTTGGTAGTCGTCGTGTTGTTCAAGTATC 1138
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1056 TGAAAATGTAGGACTTCTTGGGTTAACAAGAGTTGGTAGCCGTCGTGTTGTTCAAGTATC 1115
Query 1139 TGCAGGCTTCATGATTGTTTTCTCAACATTGGGCAAATTCGGAGCTGTTTTCGCATCGAT 1198
|||||||||||||||| | ||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 1116 TGCAGGCTTCATGATTCTATTCTCAATATTTGGCAAATTCGGAGCTGTTTTTGCATCGAT 1175
Query 1199 ACCAGTCCCGATATACGCAGCGTTGCACTGCATCCTCTTCGGCCTTGTTGCTGCGGTTGG 1258
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1176 ACCAGTCCCGATATACGCAGCATTGCACTGCATCCTCTTCGGCCTTGTTGCTGCGGTTGG 1235
Query 1259 TCTCTCATTTCTTCAGTTCACAAACATGAACTCAATGAGAAACCTAATGATCACCGGACT 1318
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1236 TCTCTCATTTCTTCAGTTCACAAACATGAACTCCATGAGAAACTTAATGATCACCGGTCT 1295
Query 1319 TTCGCTCTTTCTCGGAATCTCCATACCTCAATTCTTCGCTCAGTACTGGGACGCTAGACA 1378
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 1296 TTCGCTCTTTCTCGGAATCTCCATACCGCAGTTCTTCGTTCAGTACTGGGACGCTAGACA 1355
Query 1379 TTACGGATTAGTTCACACAAACGCAGGATGGTTCAACGCATTCTTGAACACGTTATTCAT 1438
|||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1356 TTACGGGCTAGTACACACAAACGCAGGATGGTTCAACGCTTTCTTGAACACAATATTCAT 1415
Query 1439 GTCACCAGCAACAGTTGGTCTAATCATTGCAGTATTCATGGACAACACAATGGAAGTAGA 1498
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1416 GTCACCAGCAACAGTTGGTCTAATCATTGCGGTATTCATGGACAACACAATGGAAGTAGA 1475
Query 1499 GAGATCAAAGAAAGATAGAGGCATGCCTTGGTGGGTCAAGTTTAGAACTTTCAGAGGTGA 1558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GAGATCAAAGAAAGACAGAGGCATGCCTTGGTGGGTCAAGTTTAGAACTTTCAGAGGTGA 1535
Query 1559 TAATCGTAATGAAGAGTTCTACACTTTGCCTTTTAACCTCAACAGATTCTTCCCTCCTAC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 TAATCGTAATGAAGAGTTCTACACTTTGCCTTTTAACCTCAACAGATTCTTCCCTCCTAC 1595
Query 1619 ATAGTTAGTAAACTTAATCAATAATAAAACTTTGATTGGTTTATGATTATTCTTTTTTGA 1678
|| |||| ||| | || | | |||| | |||||||||||||||||
Sbjct 1596 ---GT-AGTA--CTT--T---TA-T-----T--GATT--T--ATGATTATTCTTTTTTGG 1632
Query 1679 TTAAGTGGTCTCTAATTTATAACCATCGTTGGAAGTAGATT---ACTTCAACATTCAATT 1735
||| |||||||||||||||| ||| ||||||||||||| || ||||||||| | ||
Sbjct 1633 TTA-GTGGTCTCTAATTTATGACCCTCGTTGGAAGTAGTTTTTTACTTCAACA---A-TT 1687
Query 1736 TTATCACttttttttGTCTGTAGATTCAATAAAGATCA 1773
| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1688 TCATCTCTTTTTTTTTTCTGTAGATTCAATAAAGATCA 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5