BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05790.1
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480193 jgi|Araly1|480193|fgenesh2_kg.3__2894__AT2G05790.1 2638 0.0
Ahg900464 jgi|Araly1|900464|Al_scaffold_0004_1114 71.3 2e-11
> Ahg480193 jgi|Araly1|480193|fgenesh2_kg.3__2894__AT2G05790.1
Length=1796
Score = 2638 bits (1428), Expect = 0.0
Identities = 1696/1821 (93%), Gaps = 35/1821 (2%)
Strand=Plus/Plus
Query 16 AAGATGATACACATTATTTGACATGTCACATGTGaaaaaaaaaaaaTCTCAATACTAAAA 75
||| |||| || |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1 AAGGTGATGCAAATTATTTGACATGTCACATGTG----AAAATAAATCTCAATACTAAAA 56
Query 76 TAAGTACCTAATCAA-TTATTCACTTATTAATT-TCTTCTGGATAATAATAAGACCCAGT 133
|||| ||||||| || ||||||||||||| ||| ||| |||||||||||||||| ||||
Sbjct 57 TAAGAACCTAAT-AATTTATTCACTTATTGATTCCCTT-TGGATAATAATAAGACACAGT 114
Query 134 CTTCTTTACCActctccacaacaccactctctctttctctgtgtctccttcaaatcttca 193
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||
Sbjct 115 CTTCTTTACCACTCTCCACAACACCACTCTCTCTTTCTCTGTATTTCCTTAAAATCTCCA 174
Query 194 tctctctctccatctctcttctcCACAAGAAGCTGAGTATGGAtctcctcacaccactca 253
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 175 TCTCTCTCTCCAACTCTCTTCT-CACCAGAAGCTGAGTATGGATCTCCTCACACCTCTCA 233
Query 254 tcttcctcctcctcctcctctcaccattttcactct-caGATGCTGGTTCCATCGGAGTA 312
|||||||| |||| ||| ||| |||| || | |||| ||||||||||||||||||
Sbjct 234 TCTTCCTCATCCTTCTCTTCTTTTTTTTTTTTCT-TACAGAAGCTGGTTCCATCGGAGTA 292
Query 313 AACTACGGCCGAATCTCCGACGAACTCCCCTCCGCATTCAAAGTAGTCCAACTACTAAAA 372
|||||||| || ||||| |||||||| || || |||||||||||||||||||| ||||||
Sbjct 293 AACTACGGTCGTATCTCAGACGAACTACCATCAGCATTCAAAGTAGTCCAACTCCTAAAA 352
Query 373 TCCCAAGGAATC-ACGCGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCATT 431
|| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 353 TCTCAAGGAATCAAC-CGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCTTT 411
Query 432 ATCCGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGC 491
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATCTGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGC 471
Query 492 CAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGCAACGTAGCAGCTTATCATCCTTC 551
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 472 CAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGTAATGTAGCTGCTTATCATCCTTC 531
Query 552 AACACAGATCGAATCAATAGCTGTTGGTAACGAAGTCTTCGTTGATACACACAACACTAC 611
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 532 AACACAGATCGAATCAATCGCTGTTGGTAACGAAGTCTTTGTTGATACACACAACACTAC 591
Query 612 AAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCA 651
Query 672 CTCCGACATTAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTC 731
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTCTGACATCAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTC 711
Query 732 TTCCTCCGGTTCTTTCCGACCAGAACTTATTGACTCTGTTATCAAACCAATGCTTGACTT 791
|||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 712 TTCCTCTGGATCTTTCCGACCAGAACTTGTTGACTCTGTTATCAAACCGATGCTTGACTT 771
Query 792 CTTACGTGAAACTGGTTCAAGACTTATGATCAATGTCTATCCTTTCTTTGCTTATGAAGG 851
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 772 CTTACGTGAAACTGGTTCAAGACTTATGATCAATGTGTATCCTTTCTTTGCTTACGAAGG 831
Query 852 AAACTCTGACGTCATTCCTTTAGATTATGCTTTGCTTAGAGAGAATCCAGGAATGGTTGA 911
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 832 AAACTCTGACGTCATTCCTTTAGACTACGCTTTGCTTAGAGAGAATCCAGGAATGGTTGA 891
Query 912 TTCTGGTAATGGTTTGAGATACTTTAATCTCTTCGACGCTCAAATCGACGCCGTTTTCGC 971
||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 892 TTCAGGCAATGGTTTAAGGTACTTTAATCTCTTTGACGCTCAAATCGACGCCGTTTTCGC 951
Query 972 AGCAATGTCGGCTTTAAAGTACGATGATATCGAAATCATTGTCACGGAAACTGGTTGGCC 1031
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 952 AGCAATGTCGGCTTTAAAATACGATGATATCGAAATCATTGTGACGGAAACTGGTTGGCC 1011
Query 1032 GTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTCTAGCTAACGCAGCTTCTTACAACGG 1091
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1012 GTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTTTAGCAAACGCAGCTTCTTACAACGG 1071
Query 1092 AAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCT 1131
Query 1152 AACGGTCTATCT-TTTCGCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGA 1210
|| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GACAGTGTATCTCTTT-GCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGA 1190
Query 1211 GAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAG 1250
Query 1271 -AGGGGTTGAAACATTACCGTGACGGTGGTCATACTCCGGTCACTGGAGGAGATCAGGTT 1329
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1251 AAGGGCTT-AAACATTACCGTGACGGTGGTCATACTCCGGTCACCGGAGGAGATCAGACC 1309
Query 1330 A-CA--AAGCCTCCGATGAGTGGAGGCGTGTCGAAGAGTTTGAATGGTTATACTTGGTGT 1386
| || |||||||| ||||| ||||| |||||||||||||| |||||| |||||||||||
Sbjct 1310 ACCACGAAGCCTCCAATGAGCGGAGGTGTGTCGAAGAGTTTAAATGGTCATACTTGGTGT 1369
Query 1387 GTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGT 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 GTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGT 1429
Query 1447 GAAGGTGGTGCTGATTGTC-GTCCTATTCAACCTGGTGCTAACTGTTATAGTCCTGATAC 1505
||||||||||||||||| | || | ||||||||||||||||||||||| |||||||||||
Sbjct 1430 GAAGGTGGTGCTGATTG-CAGTTCGATTCAACCTGGTGCTAACTGTTACAGTCCTGATAC 1488
Query 1506 ACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTACCAGAAGAAGGGTCGTGCCGG 1565
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1489 ACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTATCAGAAGAAGGGTCGTGCCGG 1548
Query 1566 TGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAG 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAG 1608
Query 1626 ATGCGAGTTTCCGACAGGATATTAAGGAAGAAGAAGATTTAAGTTTAGATTAATTTCTGC 1685
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1609 ATGCGAGTTTCCGACAGGATATTAAGGAAGAAGAAGATTTGAGTTTAGATTAATTTCTGC 1668
Query 1686 TATATAATATATTCgttttttgatgtattttgtttggtgggaagttttagttaatttttg 1745
|||||||||||||||| ||||||||| |||| |||| | || |||| || || || ||
Sbjct 1669 TATATAATATATTCGTATTTTGATGTTTTTTTTTTGTT---AATTTTT-GT-AAGTTCTG 1723
Query 1746 taacaatgactttttaatgtTGTGTTGTTAATACCAACTTAGACGATGTTATTGATATTT 1805
| || |||| |||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct 1724 -A-CA----CTTT--AATGTTATGTTGTTAATATCAACTGAGACGATGTTCTTGATATTT 1775
Query 1806 GATATTTAGGTAATGAAATTA 1826
||||||||||||||||||||
Sbjct 1776 AATATTTAGGTAATGAAATTA 1796
> Ahg900464 jgi|Araly1|900464|Al_scaffold_0004_1114
Length=1182
Score = 71.3 bits (38), Expect = 2e-11
Identities = 45/48 (94%), Gaps = 2/48 (4%)
Strand=Plus/Plus
Query 1016 CGGAAACTGGTTGGCCGTCGAAAGGAGATGAGAATGA-AGTCGGAGCT 1062
||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 797 CGGAAACCGGTTGGCCGTCGAAAGGAGATGAGAATGAGA-TCGGAGCT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69209975165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5