BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05810.1
Length=2282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480195 jgi|Araly1|480195|fgenesh2_kg.3__2896__AT2G05810.1 3238 0.0
Ahg949350 jgi|Araly1|949350|scaffold_801237.1 344 2e-93
> Ahg480195 jgi|Araly1|480195|fgenesh2_kg.3__2896__AT2G05810.1
Length=2214
Score = 3238 bits (1753), Expect = 0.0
Identities = 2086/2242 (93%), Gaps = 42/2242 (2%)
Strand=Plus/Plus
Query 14 ACAAACTATGGCATCAAGAGAAATAGATTTGTCATCAAAGTACACATCACCTAAAAGTAA 73
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ACAAATTATGGCATCAAGAGAAATAGATTTGTCATCAAAGTACACATCACC-AAAAGT-A 58
Query 74 AAATAGACAAAAGAGACCTTGTCCTCACGCCTCTCTCTTTTTCCCGGCAACAACTAACAA 133
|||| ||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||
Sbjct 59 AAATTGACAAAACAGAGCTTGTCCTCACGCCTCTCTC-TTTTCCCGGCAACAA-T--TAA 114
Query 134 CAACACTTCTTTACCTTTCTCTCTAAGGCAAAACCCTTCTCTTATGTGACCACTCCTCCA 193
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CAACA---CTTTACCTTTCTCTCTAAGGCAAAACCCTTCTCTTATGTGACCACTCCTCCA 171
Query 194 TGCATCCCTCCTCCGCCGCCGTCTCCGGCGAACTCACAAAACCACCAACAGCTCCACTCC 253
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TGCATCACTCCTCCGCCGCCGTCTCCGGCGAACTCACAAAACCACCAACAGCTCCACTCC 231
Query 254 AACCACTTGTTGACCTAATAACAAACGtcctctccctcctcctcctctcttccctcACCG 313
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AACCACTTCTTGACTTAATCACAAACGTCCTCTCCCTCCTCCTCCTCTCTTCCCTCACCG 291
Query 314 TCCGTTCCTTCATCGGACGGTGGCAAATCCTCCGATCCAAACTCTTCACACTAAACTCAT 373
|||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 292 TCCGTTCCTTCATCGGCCGTTGGCAAATCCTCCGATCCAAACTCTTCTCACTAAACTCAT 351
Query 374 CTCTCTCTTCCTTATCCGAATCACCTCACTGGTCACAAAAtcctctcctccacactctcc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTCTCTCTTCCTTATCCGAATCACCTCACTGGTCACAAAATCCTCTCCTCCACACTCTCC 411
Query 434 tcccttctctcctctcaaatctccaacgcctctcttcactctccgaccaatgctcctccG 493
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 412 TTCCTTCTCTCCTCTCAAATCTCCAACGCCTCACTTCACTCTCCGACCAATGCTCCTCCG 471
Query 494 CTTCATTCTCCGGTGGTAAACTTCTCATGCAAAGCGACCTCGACATAGCTTCCTCTTCCC 553
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 472 CTTCATTCTCCGGTGGTAAACTTCTCATGCAAAGCGACCTCGATATCGCTTCCTCTTCAC 531
Query 554 TCTCTACTCACATAAGTGACCTTGACCTCCTCCTCAGATCCGGTGTCCTCCACCAACAAA 613
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 532 TCTCCACTCACATAAGCGACCTTGACCTCCTCCTCAGATCTGGTGTCCTCCACCAACAAA 591
Query 614 ACGCCATCGTTTTATCACTCCCACCACCAACATCAGATAAAGATGACATTGCCTTCTTCA 673
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 592 ACGCTATCGTTTTATCACTCCCACCTCCAACTTCAGATAAAGATGACATTGCTTTCTTCA 651
Query 674 TCAGAGACCTCTTCACTCGTCTCCAAATCGGTGGAGCTGAGTTCAA-AAAGAAATCTCTA 732
||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||| ||
Sbjct 652 TCAGAGATCTCTTCACTCGTCTCCAAATCGGTGGAGCTGAATTCAAGAAA-AAATCTTTA 710
Query 733 GAATCTCTTCTTCAACTTCTCACCGATAACGAAAAATCCGCAAGAATCATAGCTAAAGAA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GAATCTCTTCTTCAACTTCTCACCGATAACGAAAAATCCGCAAGAATCATAGCTAAAGAA 770
Query 793 GGTAATGTTGGTTACTTAGTAACTCTTCTTGATCTCCATCACCATCCTCTAATCCGTGAG 852
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 771 GGTAATGTTAGTTACTTAGTCACTCTTCTTGATCTCCATCACCATCCTCTGATCCGTGAG 830
Query 853 CACGCACTCGCCGCCGTCTCGC-TGTTAACTTCATCGAGCGCCGACTCGAGAAAGACGGT 911
|| ||||||||||||||||| | | ||||||||||| |||| ||| ||||||||||||||
Sbjct 831 CATGCACTCGCCGCCGTCTC-CTTATTAACTTCATCAAGCGTCGATTCGAGAAAGACGGT 889
Query 912 GTTCGAACAAGGCGGATTAGGTCCATTACTACGATTGCTAGAAACCGGATCTTCACCGTT 971
|||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 890 GTTCGAACAAGGCGGATTAGGTCCATTACTACGATTACTCGAAACCGGATCTCCACCGTT 949
Query 972 CAAAACAAGAGCAGCAATAGCGATTGAAGCTATAACCGCCGATCCAGCAACCGCTTGGGC 1031
||||||||||| || | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 950 GAAAACAAGAGCTGCGGTGGCGATTGAAGCTATAACCGCCGATCCAGAAACCGCTTGGGC 1009
Query 1032 TATCTCAGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACA 1091
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1010 TATCTCAGCTTACGGCGGCGTAACCGTGTTAATCGAAGCTTGTAGATCAGGATCTAAAGA 1069
Query 1092 AGTACAAGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAAC 1151
||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1070 AGTACAAGAACACATCGCTGGTGCTATAAGCAATATCTCCGCCGTGGAAGAAATCAGAAC 1129
Query 1152 AACATTAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATC 1211
|||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1130 AACACTAGCTGAAGAAGGAGCTATACCGGTTCTTCTCCCTCTCTTAATCTCCGGTTCATC 1189
Query 1212 ATCGG-TACAAGAGAAA-ACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTAT 1269
|||| || |||| ||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1190 GTCGGTTA-AAGA-AAAGACGGCGAATTTCATCTCCTTAATCTCATCTTCCGGTGAGTAT 1247
Query 1270 TACAGAGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGATTCATTTAGTTCAA 1329
| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 1248 TTCAGAGATTTGATTGTTAGAG-AA-A-GAGGATTACAGATTCTGATTCATTTAGTTCAA 1304
Query 1330 GAATCATCAAATCCCGATACGATCGAACACTGTTTGCTTGCTCTCTCTCAGATCTCTGCC 1389
|||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||| |||
Sbjct 1305 GAATCATCAAATCCCGATACAATCGAACACTCTTTGCTTGCTCTCACTCAAATCTCCGCC 1364
Query 1390 ATGGAAACAGTTTCTAGGGTTTTATCTTCATCAACAAGGTTCATAATCCGATTAGGTGAA 1449
||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1365 ATGGAAACAATTTCTAGGGTTTTATCATCATCAACAACATTCATAATCCGATTAGGTGAA 1424
Query 1450 TTGATAAAACACGGAAACGTAATCCTTCAACAGATCTCAACTTCTCTTTTATCGAATTTA 1509
|| || || ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1425 TTAATCAAGCACGGAAACGTGATCCTTCAACAGATCTCATCTTCTCTTTTATCGAATTTA 1484
Query 1510 ACAATCAGCGACGGTAACAAACGAGCCGTCGCTGATTGTTTAAGCTCGTTGATTCGGTTA 1569
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 ACAATCAGCGACGGAAACAAACGAGCCGTCGCTGATTGTTTAAGCTCGTTGATTCGGTTA 1544
Query 1570 ATGGAATCGCCGAAACCGGCGGGGTTACAAGAAGCGGCGACGGAGGCGGCGAAGTCGTTG 1629
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1545 ATGGAATCGCCGAAACCGGCGGGGTTACAAGAAGCGGCAACGGAGGCGGCTAAGTCGTTG 1604
Query 1630 TTGACCGTTAGATCAAATCGGAAGGAGTTGATGAGAGATGAGAAGAGTGTGATTCGATTG 1689
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1605 TTGACGGTTAGATCAAATCGGAAAGAGTTGATGAGAGACGAGAAGAGTGTGATTCGATTG 1664
Query 1690 GTGCAAATGTTGGATCCGAGGAATGAGAGGATGAATAATAAAGAGCTTCCGGTGATGGTT 1749
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1665 GTGCAAATGTTAGATCCGAGGAATGAGAGGATGGCGAATAAAGAGCTTCCGGTGATGATT 1724
Query 1750 GTGACGGCGATTTTATCAGGTGGAAGTTATGCGGCGAGGACGAAGTTGATTGGTTTAGGA 1809
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1725 GTGACGGCGATTTTATCCGGTGGAAGTTACGCGGCGAGGACGAAGTTGATTGGTTTAGGA 1784
Query 1810 GCTGATCGTTATCTTCAATCTCTGGAGGAAATGGAAGTTCCCGGTGCTAAGAAAGCGGTT 1869
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1785 GCTGATCGTTACCTACAATCTCTGGAGGAAATGGAAGTTTCCGGTGCTAAGAAAGCGGTT 1844
Query 1870 CAGAGACTCGCCGCCGGTAATCGGTTAAAGAGTATCTTCTTCACTAGACCATGGAAAGAT 1929
||||||||||||||||||||||||||||||||||||||| | | ||| | |||||||||
Sbjct 1845 CAGAGACTCGCCGCCGGTAATCGGTTAAAGAGTATCTTCA-C-C-AGAGCTTGGAAAGAT 1901
Query 1930 CACT-A-AAAGGTATGAAGGTTTCAATTTGTGGAAGGAGAATATTCCGATTTCTCATACT 1987
|||| | |||||| |||||| || ||||||||||||| ||| | ||||||| ||||||||
Sbjct 1902 CACTGATAAAGGTGTGAAGGATTAAATTTGTGGAAGGCGAAGAATCCGATTACTCATACT 1961
Query 1988 CTAAATACAACACATTCACATCAACAACCAATTGttttttttttcttttcttttCTAAAT 2047
||| |||||||||||||||||| |||| ||||||||||| |||| ||| || ||||
Sbjct 1962 CTATATACAACACATTCACATCTACAAACAATTGTTTTTGTTTT-TTT-CT-----AAAT 2014
Query 2048 ATGAAAATCCTAATATTTATTTTTTAACTATTATCAAAAGTCA-TGGATGCAGGTTTTAT 2106
|||||||||||||||||| |||||||| |||| | | | ||||||||||||||||
Sbjct 2015 ATGAAAATCCTAATATTTTTTTTTTAA-TATTTTTTTTTTTTAATGGATGCAGGTTTTAT 2073
Query 2107 AGTATCCTTCTTCTGTTTTGT-TTATTTATTTATAAAGTGGAGAGttttttttttttttt 2165
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2074 AGTATCCTTCTTCTGTTTT-TATTATTTATTTATAAAGTGGAGAGTTTTTTTTTTTTTTT 2132
Query 2166 t-ACATGTATT-T--GTGTGATTATATAT--GTAAATGACTCTTGAGTTTTGATCTGTAG 2219
||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2133 CCACATGTATTATTTGTGTGATTATATATATGTAAATGACTCTTGAGTTTTGATCTGTGG 2192
Query 2220 GAGTACTTAATATTGTAACTGT 2241
||||||| ||||||||||||||
Sbjct 2193 GAGTACTAAATATTGTAACTGT 2214
> Ahg949350 jgi|Araly1|949350|scaffold_801237.1
Length=484
Score = 344 bits (186), Expect = 2e-93
Identities = 251/281 (89%), Gaps = 10/281 (4%)
Strand=Plus/Plus
Query 1038 AGCTTACGGAGGCGTAACCGTATTAATCGAAGCTTGTAGATCAGGATCTAAACAAGTACA 1097
||||||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 185 AGCTTACGGTGGCGTAACCATATTAATCAAAGCTTGTAGATCAGGATCTGAAGAAGTACA 244
Query 1098 AGAACACATCGCTGGTGCTATAAGCAACATCGCCGCCGTTGAAGAAATCAGAACAACAT- 1156
||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |
Sbjct 245 AGAACACATCGCTGGTGCTATTAGCAATATCTCCGCCGTGGAAGAAATCAGAACAAC-TC 303
Query 1157 TAGCTGAAGAAGGAGCTATACCGGTTCTTATCCAACTCTTAATCTCCGGTTCATCATCGG 1216
||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| | ||
Sbjct 304 TAGCTGAAGAAGGAGCTGTACCGGTTCTTCTCCCTCTCTTAATCTCCGGTTCATCGTTGG 363
Query 1217 T-ACAAGAGAAA-ACCGCGAATTTCATCTCCTTGATCTCATCTTCCGGTGAGTATTACAG 1274
| | |||| ||| || | ||||||||||||||| || ||||||||||||||||||| |||
Sbjct 364 TTA-AAGA-AAAGACGGTGAATTTCATCTCCTTAATATCATCTTCCGGTGAGTATTTCAG 421
Query 1275 AGATTTGATTGTTAGAGAAAGAGGAGGATTACAGATTCTGA 1315
||||||||||||||||||||||||| ||||||||| |||
Sbjct 422 AGATTTGATTGTTAGAGAAAGAGGA---TTACAGATT-TGA 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85931592720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5