BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05812.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480195 jgi|Araly1|480195|fgenesh2_kg.3__2896__AT2G05810.1 2891 0.0
Ahg949350 jgi|Araly1|949350|scaffold_801237.1 344 1e-93
> Ahg480195 jgi|Araly1|480195|fgenesh2_kg.3__2896__AT2G05810.1
Length=2214
Score = 2891 bits (1565), Expect = 0.0
Identities = 1791/1899 (94%), Gaps = 20/1899 (1%)
Strand=Plus/Minus
Query 17 GAAGATACTCTTTAACCGATTACCGGCGGCGAGTCTCTGAACCGCTTTCTTAGCACCGGG 76
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 GAAGATACTCTTTAACCGATTACCGGCGGCGAGTCTCTGAACCGCTTTCTTAGCACCGGA 1824
Query 77 AACTTCCATTTCCTCCAGAGATTGAAGATAACGATCAGCTCCTAAACCAATCAACTTCGT 136
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1823 AACTTCCATTTCCTCCAGAGATTGTAGGTAACGATCAGCTCCTAAACCAATCAACTTCGT 1764
Query 137 CCTCGCCGCATAACTTCCACCTGATAAAATCGCCGTCACAACCATCACCGGAAGCTCTTT 196
||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1763 CCTCGCCGCGTAACTTCCACCGGATAAAATCGCCGTCACAATCATCACCGGAAGCTCTTT 1704
Query 197 ATTATTCATCCTCTCATTCCTCGGATCCAACATTTGCACCAATCGAATCACACTCTTCTC 256
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1703 ATTCGCCATCCTCTCATTCCTCGGATCTAACATTTGCACCAATCGAATCACACTCTTCTC 1644
Query 257 ATCTCTCATCAACTCCTTCCGATTTGATCTAACGGTCAACAACGACTTCGCCGCCTCCGT 316
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1643 GTCTCTCATCAACTCTTTCCGATTTGATCTAACCGTCAACAACGACTTAGCCGCCTCCGT 1584
Query 317 CGCCGCTTCTTGTAACCCCGCCGGTTTCGGCGATTCCATTAACCGAATCAACGAGCTTAA 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 TGCCGCTTCTTGTAACCCCGCCGGTTTCGGCGATTCCATTAACCGAATCAACGAGCTTAA 1524
Query 377 ACAATCAGCGACGGCTCGTTTGTTACCGTCGCTGATTGTTAAATTCGATAAAAGAGAAGT 436
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1523 ACAATCAGCGACGGCTCGTTTGTTTCCGTCGCTGATTGTTAAATTCGATAAAAGAGAAGA 1464
Query 437 TGAGATCTGTTGAAGGATTACGTTTCCGTGTTTTATCAATTCACCTAATCGGATTATGAA 496
|||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct 1463 TGAGATCTGTTGAAGGATCACGTTTCCGTGCTTGATTAATTCACCTAATCGGATTATGAA 1404
Query 497 CCTTGTTGATGAAGATAAAACCCTAGAAACTGTTTCCATGGCAGAGATCTGAGAGAGAGC 556
|||||||||| |||||||||||||||| |||||||||||| ||||| |||| ||||||
Sbjct 1403 TGTTGTTGATGATGATAAAACCCTAGAAATTGTTTCCATGGCGGAGATTTGAGTGAGAGC 1344
Query 557 AAGCAAACAGTGTTCGATCGTATCGGGATTTGATGATTCTTGAACTAAATGAATCAGAAT 616
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AAGCAAAGAGTGTTCGATTGTATCGGGATTTGATGATTCTTGAACTAAATGAATCAGAAT 1284
Query 617 CTGTAATCCTCCTCTTTCTCTAACAATCAAATCTCTGTAATACTCACCGGAAGATGAGAT 676
||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1283 CTGTAATCCTC-T-TT-CTCTAACAATCAAATCTCTGAAATACTCACCGGAAGATGAGAT 1227
Query 677 CAAGGAGATGAAATTCGCGGT-TTTCTCTTGTA-CCGATGATGAACCGGAGATTAAGAGT 734
||||||||||||||||| || ||| |||| || |||| ||||||||||||||||||||
Sbjct 1226 TAAGGAGATGAAATTCGCCGTCTTT-TCTT-TAACCGACGATGAACCGGAGATTAAGAGA 1169
Query 735 TGGATAAGAACCGGTATAGCTCCTTCTTCAGCTAATGTTGTTCTGATTTCTTCAACGGCG 794
||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1168 GGGAGAAGAACCGGTATAGCTCCTTCTTCAGCTAGTGTTGTTCTGATTTCTTCCACGGCG 1109
Query 795 GCGATGTTGCTTATAGCACCAGCGATGTGTTCTTGTACTTGTTTAGATCCTGATCTACAA 854
| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1108 GAGATATTGCTTATAGCACCAGCGATGTGTTCTTGTACTTCTTTAGATCCTGATCTACAA 1049
Query 855 GCTTCGATTAATACGGTTACGCCTCCGTAAGCTGAGATAGCCCAAGCGGTTGCTGGATCG 914
||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1048 GCTTCGATTAACACGGTTACGCCGCCGTAAGCTGAGATAGCCCAAGCGGTTTCTGGATCG 989
Query 915 GCGGTTATAGCTTCAATCGCTATTGCTGCTCTTGTTTTGAACGGTGAAGATCCGGTTTCT 974
|||||||||||||||||||| | || ||||||||||| ||||||| ||||||||||||
Sbjct 988 GCGGTTATAGCTTCAATCGCCACCGCAGCTCTTGTTTTCAACGGTGGAGATCCGGTTTCG 929
Query 975 AGCAATCGTAGTAATGGACCTAATCCGCCTTGTTCGAACACCGTCTTTCTCGAGTCGGCG 1034
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 928 AGTAATCGTAGTAATGGACCTAATCCGCCTTGTTCGAACACCGTCTTTCTCGAATCGACG 869
Query 1035 CTCGATGAAGTTAACA-GCGAGACGGCGGCGAGTGCGTGCTCACGGATTAGAGGATGGTG 1093
|| ||||||||||| | | ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 868 CTTGATGAAGTTAATAAG-GAGACGGCGGCGAGTGCATGCTCACGGATCAGAGGATGGTG 810
Query 1094 ATGGAGATCAAGAAGAGTTACTAAGTAACCAACATTACCTTCTTTAGCTATGATTCTTGC 1153
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 809 ATGGAGATCAAGAAGAGTGACTAAGTAACTAACATTACCTTCTTTAGCTATGATTCTTGC 750
Query 1154 GGATTTTTCGTTATCGGTGAGAAGTTGAAGAAGAGATTCTAGAGATTTCTTT-TTGAACT 1212
||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct 749 GGATTTTTCGTTATCGGTGAGAAGTTGAAGAAGAGATTCTAAAGATTT-TTTCTTGAATT 691
Query 1213 CAGCTCCACCGATTTGGAGACGAGTGAAGAGGTCTCTGATGAAGAAGGCAATGTCATCTT 1272
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 690 CAGCTCCACCGATTTGGAGACGAGTGAAGAGATCTCTGATGAAGAAAGCAATGTCATCTT 631
Query 1273 TATCTGATGTTGGTGGTGGGAGTGATAAAACGATGGCGTTTTGTTGGTGGAGGACACCGG 1332
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 630 TATCTGAAGTTGGAGGTGGGAGTGATAAAACGATAGCGTTTTGTTGGTGGAGGACACCAG 571
Query 1333 ATCTGAGGAGGAGGTCAAGGTCACTTATGTGAGTAGAGAGGGAAGAGGAAGCTATGTCGA 1392
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||
Sbjct 570 ATCTGAGGAGGAGGTCAAGGTCGCTTATGTGAGTGGAGAGTGAAGAGGAAGCGATATCGA 511
Query 1393 GGTCGCTTTGCATGAGAAGTTTACCACCGGAGAATGAAGCggaggagcattggtcggaga 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GGTCGCTTTGCATGAGAAGTTTACCACCGGAGAATGAAGCGGAGGAGCATTGGTCGGAGA 451
Query 1453 gtgaagagaggcgttggagatttgagaggagagaagggaggagagtgtggaggagaggaT 1512
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 GTGAAGTGAGGCGTTGGAGATTTGAGAGGAGAGAAGGAAGGAGAGTGTGGAGGAGAGGAT 391
Query 1513 TTTGTGACCAGTGAGGTGATTCGGATAAGGAAGAGAGAGATGAGTTTAGTGTGAAGAGTT 1572
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 390 TTTGTGACCAGTGAGGTGATTCGGATAAGGAAGAGAGAGATGAGTTTAGTGAGAAGAGTT 331
Query 1573 TGGATCGGAGGATTTGCCACCGTCCGATGAAGGAACGGACGGTgagggaagagaggagga 1632
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 330 TGGATCGGAGGATTTGCCAACGGCCGATGAAGGAACGGACGGTGAGGGAAGAGAGGAGGA 271
Query 1633 ggagggagaggaCGTTTGTTATTAGGTCAACAAGTGGTTGGAGTGGAGCTGTTGGTGGTT 1692
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 270 GGAGGGAGAGGACGTTTGTGATTAAGTCAAGAAGTGGTTGGAGTGGAGCTGTTGGTGGTT 211
Query 1693 TTGTGAGTTCGCCGGAGACGGCGGCGGAGGAGGGATGCATGGAGGAGTGGTCACATAAGA 1752
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 210 TTGTGAGTTCGCCGGAGACGGCGGCGGAGGAGTGATGCATGGAGGAGTGGTCACATAAGA 151
Query 1753 GAAGGGTTTTGCCTTAGAGAGAAAGGTAAAGAAGTGTTGTTGTTAGTTGTTGCCGGGAAA 1812
||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 150 GAAGGGTTTTGCCTTAGAGAGAAAGGTAAAG---TGTTGTTA--A-TTGTTGCCGGGAAA 97
Query 1813 AAGAGAGAGGCGTGAGGACAAGGTCTCTTTTGTCTATTTTTACTTTTAGGTGATGTGTAC 1872
| |||||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||
Sbjct 96 A-GAGAGAGGCGTGAGGACAAGCTCTGTTTTGTCAATTTT-ACTTTT-GGTGATGTGTAC 40
Query 1873 TTTGATGACAAATCTATTTCTCTTGATGCCATAGTTTGT 1911
||||||||||||||||||||||||||||||||| |||||
Sbjct 39 TTTGATGACAAATCTATTTCTCTTGATGCCATAATTTGT 1
> Ahg949350 jgi|Araly1|949350|scaffold_801237.1
Length=484
Score = 344 bits (186), Expect = 1e-93
Identities = 251/281 (89%), Gaps = 10/281 (4%)
Strand=Plus/Minus
Query 610 TCAGAATCTGTAATCCTCCTCTTTCTCTAACAATCAAATCTCTGTAATACTCACCGGAAG 669
||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 458 TCA-AATCTGTAA---TCCTCTTTCTCTAACAATCAAATCTCTGAAATACTCACCGGAAG 403
Query 670 ATGAGATCAAGGAGATGAAATTCGCGGT-TTTCTCTTGT-ACCGATGATGAACCGGAGAT 727
|||| || ||||||||||||||| | || ||| |||| | ||| | ||||||||||||||
Sbjct 402 ATGATATTAAGGAGATGAAATTCACCGTCTTT-TCTT-TAACCAACGATGAACCGGAGAT 345
Query 728 TAAGAGTTGGATAAGAACCGGTATAGCTCCTTCTTCAGCTA-ATGTTGTTCTGATTTCTT 786
|||||| ||| ||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 344 TAAGAGAGGGAGAAGAACCGGTACAGCTCCTTCTTCAGCTAGA-GTTGTTCTGATTTCTT 286
Query 787 CAACGGCGGCGATGTTGCTTATAGCACCAGCGATGTGTTCTTGTACTTGTTTAGATCCTG 846
| ||||||| ||| ||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 285 CCACGGCGGAGATATTGCTAATAGCACCAGCGATGTGTTCTTGTACTTCTTCAGATCCTG 226
Query 847 ATCTACAAGCTTCGATTAATACGGTTACGCCTCCGTAAGCT 887
|||||||||||| |||||||| ||||||||| |||||||||
Sbjct 225 ATCTACAAGCTTTGATTAATATGGTTACGCCACCGTAAGCT 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5