BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05830.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480197 jgi|Araly1|480197|fgenesh2_kg.3__2898__AT2G05830.1 2141 0.0
> Ahg480197 jgi|Araly1|480197|fgenesh2_kg.3__2898__AT2G05830.1
Length=1391
Score = 2141 bits (1159), Expect = 0.0
Identities = 1296/1361 (95%), Gaps = 14/1361 (1%)
Strand=Plus/Plus
Query 1 GTCGGTTGGTGTGTTTCACGCCGGCTTGGTGCTCTAGGCATCTATCTGATTCTCACTATC 60
||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1 GTCGGTTGGTGCGTTTCACGCCGGCTTGGTGCTCTAGG---C-ATCTGATTCTCACTGT- 55
Query 61 ACTACTGACACAAATCCTTTTCCTTTTGTTCCTCTTTCTCTAAACCAATCTTTAAAACAA 120
| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 56 -C-ACTGACCCAAATCTTTTTCCTTTTGTTCCTCTTTCTCTAAACCAATCTTTGAAACAA 113
Query 121 CTTATTCGTCTTCAAGATTTCTCCAACAAGTCCTA-CCATGTCCGGCGAAGGAGACACGA 179
||||||| ||||||||||| |||| |||||||| | ||||||| | |||||||||||||
Sbjct 114 CTTATTCCTCTTCAAGATTACTCC-ACAAGTCC-ATCCATGTCTAGTGAAGGAGACACGA 171
Query 180 CCCTCAAAGCTATCTGTTACAAGCCTGGCTCTCTCCAGTTACTCGATCAGAGGAAGCTTC 239
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 172 CCCTCAAAGCTATCTGCTACAAGCCTGGCTCTCTTCAATTACTCGATCAGAGGAAGCTTC 231
Query 240 CTTTAGAGACTATTTACTTAGAGATTCGTGATGCTTCAGATGGATGGAGTGCTATTCAGG 299
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 232 CTTTAGAGACCATTTACTTAGAGATTCGTGATTCTTCAGATGGATGGAGTGCTATTCAGG 291
Query 300 AAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCTTTGGCTGTTG 351
Query 360 AAGTTTTCAACTTTCATGGTTTTGATGGATCAGCTTCAGATGCTGTTGCTTTTCTTGAGA 419
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 352 AAGTTTTCAACTTTAATGGTTTTGATGGATCAGCTGCAGATGCTGTTGCTTTTCTTGAGA 411
Query 420 ACAAGTTGGATTATTTAGTGTCAAGCCGTCCAACAGCAGTTAATCTTGCAGATGCTGCTT 479
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 412 AGAAGTTGGATTATTTAGTGTCAAGTCGTCCAACAGCAGTTAATCTTGCAGATGCTGCAT 471
Query 480 TGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTT 539
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||
Sbjct 472 TGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTATTGCCACTGAACCCAAATCTATTT 531
Query 540 TCAAGGCATATATTGAAGCTAG-TGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAA 598
| |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 532 TTAAGGTATATATTGAAGCG-GCTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAA 590
Query 599 GCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTT 658
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GCAATAGGAACCTTTGGTTCAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTT 650
Query 659 TCTGTTTTGACCCATTGCAACACTGGCAGCCTTGCTACCGCCGGATATGGTACTGCCCTC 718
|||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 651 TCTGTTCTGACCCATTGCAACACTGGCAGCCTTGCTACTGCTGGATATGGTACTGCCCTC 710
Query 719 GGTGTCATCCGTGCACTCCATACTCAAGGAATCTTAGAAAGAGCATACTGCACAGAAACT 778
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 711 GGTGTCATCCGCGCACTCCACACTCAAGGAGTCTTAGAAAGAGCATACTGCACAGAAACT 770
Query 779 CGTCCATTTAATCAAGGATCGAGGCTTACAGCGTTTGAGTTGGTGCATGAGAAAATCCCT 838
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 CGTCCATTCAATCAAGGATCGAGGCTTACAGCGTTTGAGTTAGTGCATGAGAAAATCCCT 830
Query 839 GCAACTCTCATTGCAGACTCAGCTGCAGCTGCACTGATGAAAGATGGTCGTGTTGATGGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 831 GCAACTCTCATTGCAGACTCAGCTGCAGCTGCACTGATGAAAGATGGTCGTGTCGATGGT 890
Query 899 GTCATCGTTGGAGCTGATCGTGTGGCTTCAAATGGCGATACTGCTAACAAGATTGGGACT 958
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 891 GTCATTGTTGGAGCTGATCGCGTGGCTTCAAATGGTGATACTGCTAACAAGATTGGGACT 950
Query 959 TACAGTCTCGCCTTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTT 1018
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TACAGTCTCGCCCTGTGCGCAAAACATCACGGGATCCCATTTTATGTTGCTGCACCTCTT 1010
Query 1019 ACCTCAGTTGATCTGTCACTTTCATCCGGGAAAGAAATCGTGATAGAGGAAAGATCTCCA 1078
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1011 ACCTCAGTTGATCTGTCACTTTCATCCGGGAAAGAAATCGTAATAGAGGAAAGATCTCCA 1070
Query 1079 AAGGAGTTGATGCACACACACGGAGGACTTGGTGAACGCATTGCAGCACCAGGGATCTCA 1138
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AAGGAGTTGCTGCACACACATGGAGGACTTGGTGAACGCATTGCAGCACCAGGGATCTCA 1130
Query 1139 GTTTGGAACCCAGCTTTTGATATGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAG 1198
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GTTTGGAACCCAGCTTTTGATGTGACTCCAGCAGAGCTGATTGCAGGAATCATAACCGAG 1190
Query 1199 AAAGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAG 1258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AAGGGGGTCATAACAAAGAATGGCAATGATACATTTGACATAAGCAGCTTTGCCAAGAAG 1250
Query 1259 ATAACAGGAAACTCATCTCGTTGAAGTTAGAGTCAGCATTGCGACTTGCGGATGTTCCCC 1318
|| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1251 ATGACAGGAAACTCATCTGGTTGAAGTTAGAGTCAGCATTGCGGCTTGCGGATGTTCCCC 1310
Query 1319 TCTCTCTATATACTTGCAACAAAGCAAATTACTTTGTAATG 1359
||||| ||||||||||||||||||||||||||||||||||
Sbjct 1311 TCTCT--ATATACTTGCAACAAAGCAAATTACTTTGTAATG 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5