BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05840.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930892 jgi|Araly1|930892|scaffold_303349.1 1314 0.0
Ahg493620 jgi|Araly1|493620|fgenesh2_kg.7__3053__AT5G35590.1 815 0.0
> Ahg930892 jgi|Araly1|930892|scaffold_303349.1
Length=781
Score = 1314 bits (711), Expect = 0.0
Identities = 750/769 (98%), Gaps = 1/769 (0%)
Strand=Plus/Plus
Query 127 AGAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCAC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AGAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCAC 72
Query 187 CGGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCA 246
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 73 CGGAAGGTCGTCTCTTCCAAGTAGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCA 132
Query 247 CATCGATCGGTGTCCGAGGGAAAGATTCAGTATGCGTCGTTACGCAGAAGAAAGTTCCGG 306
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 133 CATCGATCGGTGTTCGAGGGAAAGATTCAGTATGCGTCGTTACCCAGAAGAAAGTTCCGG 192
Query 307 ACAAGCTTTTGGATCAGTCTAGTGTATCTCACCTTTTCCCTGTTACCAAGTACCTTGGAT 366
|||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 193 ACAAGCTTCTAGATCAGTCTAGTGTATCTCACCTTTTTCCTGTTACTAAGTACCTTGGAT 252
Query 367 TGTTAGCCACTGGCATGACAGCTGATTCAAGGTCATTGGTACAACAAGCTAGGAATGAGG 426
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 253 TATTAGCCACTGGCATGACAGCTGATTCAAGGTCGTTGGTACAACAAGCAAGGAATGAGG 312
Query 427 CTGCTGAGTTTAGGTTCCAATATGGTTATGAGATGCCTGCAGATATTCTTGCTAAATGGA 486
| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 313 CAGCTGAGTTTAGGTTCCAATATGGATACGAGATGCCTGCGGATATTCTTGCTAAATGGA 372
Query 487 TTGCAGATAAGTCTCAGGTTTACACACAACATGCTTACATGAGACCCCTTGGAGTAGTTG 546
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 373 TTGCAGATAAGTCACAGGTTTACACTCAACATGCTTATATGAGACCCCTTGGAGTAGTTG 432
Query 547 CCATGGTTCTAGGTATTGATGAAGAGAGAGGACCTCTACTTTACAAGTGTGACCCAGCTG 606
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CCATGGTTCTGGGTATTGATGAAGAGAGAGGACCTCTACTTTACAAGTGTGACCCAGCTG 492
Query 607 GACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATT 552
Query 667 TCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTACAGACTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTACAGACTG 612
Query 727 CTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGGTGG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGGTGG 672
Query 787 GAGTTGTGAGAGCTGATGACCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGACGAGC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GAGTTGTGAGAGCTGATGACCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGACGAGC 732
Query 847 ACTTGACGGCCATTAGTGAACGTGACTGATCACTTT-CACTGGAACATT 894
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 733 ACTTGACGGCCATTAGTGAACGTGACTGATCACTTTTCACTGGAACATT 781
> Ahg493620 jgi|Araly1|493620|fgenesh2_kg.7__3053__AT5G35590.1
Length=1029
Score = 815 bits (441), Expect = 0.0
Identities = 655/758 (86%), Gaps = 16/758 (2%)
Strand=Plus/Plus
Query 128 GAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCACC 187
|||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 43 GAAGAAGATGAGTAGAGGAAGCGGCGCTGGTTATGATCGTCACATCACCATCTTCTCACC 102
Query 188 GGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCAC 247
||||||||||||||| ||||| || ||||| ||||| ||||||||| ||||||| || ||
Sbjct 103 GGAAGGTCGTCTCTTTCAAGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTAC 162
Query 248 ATCGATCGGTGTCCGAGGGAAAGATTCAGTATGCGTCGTTACGCAGAAGAAAGTTCCGGA 307
|| ||||| || || ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 163 TTCAATCGGAGTTCGTGGGAAAGATTCCGTTTGCGTCGTTACCCAGAAGAAAGTTCCGGA 222
Query 308 CAAGCTTTTGGATCAGTCTAGTGT-ATCTCACCTTTTCCCTG-TTACCAAGTACCTTGGA 365
|||||||||||||||||||||||| | | || || ||||| | ||||||||||| |||||
Sbjct 223 CAAGCTTTTGGATCAGTCTAGTGTTA-CACATCTGTTCCC-GATTACCAAGTACATTGGA 280
Query 366 TTGTTAGCCACTGGCATGACAGCTGATTCAAGGTCATTGGTACAACAAGCTAGGAATGAG 425
||| |||| |||||||| ||||||||| ||||||| ||||| |||||||| |||||| |
Sbjct 281 TTGGTAGCTACTGGCATTACAGCTGATGCAAGGTCTTTGGTCCAACAAGCAAGGAATCAA 340
Query 426 GCTGCTGAGTTTAGGTTCCAAT-ATGGTTATGAGATGCCTG-CAGATATTCTTGCTAAAT 483
|| ||||| ||| ||||| | | |||| || |||||||||| | || |||||||||||||
Sbjct 341 GCAGCTGAATTTCGGTTC-ACTTATGGATACGAGATGCCTGTC-GACATTCTTGCTAAAT 398
Query 484 GGATTGCAGATAAGTCTCAGGTTTACACACAACATGCTTACATGAGACCCCTTGGAGTAG 543
|||| || || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 399 GGATAGCGGACAAGTCACAGGTCTACACTCAACATGCTTACATGAGACCCCTTGGAGTTG 458
Query 544 TTGCCATGGT-TCTAGGTATTGATGAAGAGAGA-GGACCTCT-ACTTTACAAGTGTGACC 600
|| ||| | | | || |||||||||||| | || || || ||||||||| |||||||
Sbjct 459 GCGCTATGTTATTT-GGCGTTGATGAAGAGA-ATGGTCC-CTTACTTTACAAATGTGACC 515
Query 601 CAGCTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAG 660
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 516 CAGCTGGACATTTTTACGGTCACAAGGCAACGAGTGCTGGTATGAAGGAACAAGAAGCAG 575
Query 661 TCAATTTCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTAC 720
||||||||||||| |||||||||||||||||||| || ||||||| ||||||||| || |
Sbjct 576 TCAATTTCTTGGAAAAGAAAATGAAAGAAAACCCAGCTTTCACATTTGATGAAACCGTGC 635
Query 721 AGACTGCTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTG 780
||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| ||||
Sbjct 636 AGACTGCCATATCCGCTTTGCAATCTGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTG 695
Query 781 AGGTGGGAGTTGTGAGAGCTGATGA-CCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATC 839
|||| ||||| |||||||| || || ||| |||||| | ||| ||| ||||||||
Sbjct 696 AGGTAGGAGTGGTGAGAGCAGA-GAACCCAGAATTCCGTGCATTGACAACGGAGGAGATT 754
Query 840 GACGAGCACTTGACGGCCATTAGTGAACGTGACTGATC 877
|| ||||| ||||| |||||||||||||| ||||||||
Sbjct 755 GAGGAGCATTTGACAGCCATTAGTGAACGAGACTGATC 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5