BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05850.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485559 jgi|Araly1|485559|fgenesh2_kg.5__1551__AT2G05850.1 1910 0.0
Ahg323748 jgi|Araly1|323748|fgenesh1_pm.C_scaffold_5001292 1325 0.0
Ahg348300 jgi|Araly1|348300|fgenesh1_pg.C_scaffold_5001692 1291 0.0
Ahg938069 jgi|Araly1|938069|scaffold_502260.1 318 7e-86
> Ahg485559 jgi|Araly1|485559|fgenesh2_kg.5__1551__AT2G05850.1
Length=1508
Score = 1910 bits (1034), Expect = 0.0
Identities = 1366/1524 (90%), Gaps = 32/1524 (2%)
Strand=Plus/Plus
Query 25 AGAATGGGAAAACAACAAGATTGGTCCGTGACCGCTTGTATTTTCCTATCGTTGTCTCTA 84
||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 AGAATGGGAAAACGACATGATTGGTCCCTGACCGCTTGTATTTTCCTATTATTGTCTCTA 60
Query 85 GCATCACAAATCCATTGTAGTAGCCAAACACATTTTCCAAGCCACAAGGGAGGAGCTGGT 144
|||| ||||||||||||||||||||||| || ||||||||| || ||| |||||| |||
Sbjct 61 GCATTACAAATCCATTGTAGTAGCCAAATACGTTTTCCAAGTCATAAGCGAGGAGTTGGA 120
Query 145 TTGTCAGGTGACACAAGCCACTTCAATTCTGTTAGTCGCGAAAATGTGCTTTCGCTTAAG 204
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 TTGTCAGGTGACACAAGCCACTTCAATTCTATTCGTCGCGAAAATGTGCTTTCGCTTAAG 180
Query 205 GAGAAAGATCTAATCGAGAAGCTCCCCGGACAACCTTCCGGCATTAGTTTCAGACAGTAC 264
||||||||||||||| || |||||||||||||||||||| | ||||||||||||| ||
Sbjct 181 GAGAAAGATCTAATCAAGCAGCTCCCCGGACAACCTTCC-G--TTAGTTTCAGACAATAT 237
Query 265 GGTGGTTATGTGGCCGTAAACGAACCAGCCACTCGGTTTTTGTACTATTATTTTGTGGAA 324
|| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 238 GGCGGTTATGTGGCCGTAAACGAACCCGCCAGTCGGTTTTTGTACTATTATTTCGTGGAA 297
Query 325 GCCATCAAACCTAGTAAATCTACTCCTCTTGTGCTCTGGTTCAACGGAGGACCGGGGTGC 384
||||||||||| | ||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 298 GCCATCAAACCCAATAAATCTACTCCTCTTGTGCTTTGGTTCAACGGAGGACCTGCCTGC 357
Query 385 TCATCTGTAGGATTTGGGGCATTTGAAGAGCTTGGTCCATTTCGCGTACATAGCGATGGC 444
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 358 TCATCTGTAGGACTTGGGGCATTTGAAGAGCTTGGTCCATTCCGCGTACATAGCGACGGC 417
Query 445 AAAACGCTTTACCGCAATCCTTATTCATGGAACAACGAGGCGAACATGTTGTTCTTCGAA 504
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAAACGCTTTTCCGCAATCCGTATTCATGGAACAACGAGGCGAACATGTTGTTCTTCGAA 477
Query 505 GGGCCAATAAGTGTAGGATTCTCGTACTCGAGTACTCCTTTTGATTG-GGAGATATTTGG 563
||||| ||| ||||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 478 GGGCCGGTAACTGTAGGATTCTCGTACTCGAGTACTCCATTTGA-TGCGGAGAAATTTGG 536
Query 564 GGAACAAGCGGATAAGCTAACAGCAGAGGATAACTACATGTTCTTGGTGAATTGGCTTGA 623
|||||||| ||| ||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 537 GGAACAAGGGGACAAGCTGACTGCAGAGGATAACTACATGTTCTTTGTGAATTGGCTTGA 596
Query 624 AAGGTTTCCGGAATATAAAGGACGAGACGTTTACATCTCCGGTCAGAGTTACGCTGGCCA 683
|||||||||||||||||||||| |||| |||||||| ||||| |||||||||| || ||
Sbjct 597 AAGGTTTCCGGAATATAAAGGAAGAGAAATTTACATCGCCGGTGAGAGTTACGCCGGTCA 656
Query 684 CTATATTCCCCAACTGGCCCAGATCATCCTTCACCGTAACAACCAAACCTTCATCAATCT 743
|||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 CTATATTCCCGAACTTGCCCAGATCATCCTTCACCGTAACAAGCAAACCTTCATCAATCT 716
Query 744 ACGAGGCATTTCGATCGGTAATCCAGGTCTCGATTTACTTATCGAGGC-TGATAATGAGA 802
|| |||||||| ||| |||||||||||||| || |||||| ||| || ||||||||| |
Sbjct 717 ACAAGGCATTTTGATTGGTAATCCAGGTCTGGACGTACTTACCGA-GCATGATAATGAAA 775
Query 803 ATAAATTTATTTTAAGTCATGGTTTGGTTTCCCAAAAAGATTTTGAAGAGTACAGTAAAG 862
| ||||||| ||||| |||||||||||| ||||||||||| ||||||||| || |||||
Sbjct 776 ACGAATTTATGTTAAGCCATGGTTTGGTTACCCAAAAAGATATTGAAGAGTCCAATAAAG 835
Query 863 TCTGCGATTTTGCCAACT-A-T-GATATGGACGAATGCCCAAAGATAA---TGCCTAAAT 916
||||| ||| | ||| | | ||||||| |||||| ||||||||| || ||||||
Sbjct 836 TCTGC---CTTGGCGACTCATTCAATATGGAAGAATGCACAAAGATAATGGTGGCTAAAT 892
Query 917 TTAGTATTGA-ACATA-A-CAAACACTTGGACGTTTACAACATATACGCTCCCGTGTGCC 973
|| | ||| | ||| | | |||| ||||||| |||||||||||||||||| |||||||
Sbjct 893 TT-G-ATT-ATACAGACAGCAAAGTCTTGGACATTTACAACATATACGCTCTTGTGTGCC 949
Query 974 TAAACTCCACGTTAAGCAGCGAACCCAAGAAATGCACCACAATAATGGAGGTTGATCCGT 1033
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AAAACTCCACGTTGAGCAGCGAACCCAAGAAATGCACCACAATAATGGAGGTTGATCCGT 1009
Query 1034 GCCGTTCCAACTACGTGAAGGCTTATCTTAACAGCGAAAATGTTCAAGAAGCGATGCATG 1093
|| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1010 GCAGAAGCAACTACGTGAAGGCTTATCTTAACAGAGAAAATGTTCAAGAAGCGATGCATG 1069
Query 1094 CCAACACCACAAAATTACCGTACGAGTGGAAGGCTTGCAATCACTACTTGAATTCCGTAT 1153
|||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||
Sbjct 1070 CCAACACCACAAAATTACCGTACGAGTGGAAGTCTTGCAATGAAGACTTGAATTATTTAT 1129
Query 1154 GGATCGACGCTGATAAAGATGCCTCAATGGTTCCTATCCTTCACGACCTGATGGGTGAGG 1213
||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 1130 GGAACGAAACTGATAAAGATGCCTCAATGATTCCTATCCTTCACGAGCTGATGGGTAAGG 1189
Query 1214 GTGTCCGAGT-ATTGGTGTATAGTGGGGACGTGGATGC-GGCTATTCCGTTTACAGCTAC 1271
|||||||||| || | | || ||||| |||||||| | ||| ||||||||||||||||
Sbjct 1190 GTGTCCGAGTCAT-GATCTACAGTGGAGACGTGGAC-CTGGCGGTTCCGTTTACAGCTAC 1247
Query 1272 AATGGCCGTGCTGAAG-ACGATGAATCTAACGGTTGTAAACGAATGGCGTCCGTGGTTTA 1330
| |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1248 AGTGGCCGTGCTGAAGGA-GATGAATCTAACGGTTGTAAAGGAATGGCGTCCGTGGTTTA 1306
Query 1331 CCGGAGGACAACTGGGAGGGTTCACAGAGGATTACGAACGGAACTTAACGTATGCAACTG 1390
|||||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct 1307 CCGGAGGACAGCTGGGAGGGTTCACAGAGGATTACAAAGGGAACTTGACGTATGCAACTG 1366
Query 1391 TGAAAGGATCAGGTCATTCTG-TTCCTTTGGACCAACCTGTACATGCTCTTAATCTATTT 1449
|||||||| |||||||| || ||||| |||||||||| |||||||||||||| | |||
Sbjct 1367 TGAAAGGAGCAGGTCATA-TGGTTCCTACGGACCAACCTATACATGCTCTTAATATCTTT 1425
Query 1450 ACCAG-TTTCATCCGTAACACTCCTCTCCCTCAAACACCCTGATTTGTAACATGTACCAC 1508
||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1426 ACCAGCTTT-ATCCGTAACACTCCTCTCCCTCAAACACCCTGATTTGTAACTTGTACCAC 1484
Query 1509 CTCTATTGACTGATCAAGATACTT 1532
||||||||||||| ||| ||||||
Sbjct 1485 CTCTATTGACTGAACAAAATACTT 1508
> Ahg323748 jgi|Araly1|323748|fgenesh1_pm.C_scaffold_5001292
Length=1446
Score = 1325 bits (717), Expect = 0.0
Identities = 1245/1491 (84%), Gaps = 72/1491 (5%)
Strand=Plus/Plus
Query 28 ATGGGAAAACAACAAGATTGGTCCGTGACCGCTTGTATTTTCCTA-TCGTTGTCTCTAGC 86
|||||| ||| |||||||||||||||||| |||||| |||||||| || |||||| | ||
Sbjct 1 ATGGGACAACGACAAGATTGGTCCGTGACTGCTTGTGTTTTCCTATTC-TTGTCTTTGGC 59
Query 87 ATCACAAATCCATTGTAGTAGCCAAACACATTTTCCAAGCCACAAGGGAGGAGCTGGTTT 146
|||||||||||||||||| ||||||| || |||||||||||| ||| |||| | |||||
Sbjct 60 ATCACAAATCCATTGTAGGAGCCAAATACTTTTTCCAAGCCATAAGCGAGGGGTTGGTTC 119
Query 147 GTCAGGTGACACAAGCCACTTCAATTCTG-TTAGTCGCGAAAATGTGCTTTCGCTTAAGG 205
|||||| ||||| ||||||||||| | || || |||| |||| ||||| ||||| ||||
Sbjct 120 GTCAGGCGACACGAGCCACTTCAA-TGTGATTCGTCGTGAAAGTGTGCCTTCGCCAAAGG 178
Query 206 AGAAAGATCTAATCGAGAAGCTCCCCGGACAACCTTCCGGCATTAGTTTCAGACAGTACG 265
|||||||||||||| || ||||||||||||||||||||| | ||| ||||| |||||| |
Sbjct 179 AGAAAGATCTAATCAAGCAGCTCCCCGGACAACCTTCCGACGTTACTTTCAAACAGTATG 238
Query 266 GTGGTTATGTGGCCGTAAACGAACCAGCCACTCGGTTTTTGTACTATTATTTTGTGGAAG 325
| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 239 GCGGTTATGTGGCCGTAAACGAACCAGCCGGTAGGTTTTTGTACTATTATTTCGTGGAAG 298
Query 326 CCATCAAACCTAGTAAATCTACTCCTCTTGTGCTCTGGTTCAACGGAGGACCGGGGTGCT 385
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 299 CCATCAAACCCAGTAAATCTACTCCTCTTGTGATCTGGTTCAACGGAGGACCGGCCTGCT 358
Query 386 CATCTGTAGGATTTGGGGCATTTGAAGAGCTTGGTCCATTTCGCGTACATAGCGATGGCA 445
||||| |||| | ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 359 CATCTCTAGG-T--GGGGCATTTAAAGAGCTTGGTCCATTCCGCGTACATAGCGATGGCA 415
Query 446 AAACGCT-TTACCGCAATCCTTATTCATGGAACAACGAGGCGAACATGTTGTTCTTCGAA 504
||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 416 AAACGCTGTT-CCGCAATCCTTATTCATGGAACAACGAGGCGAACGTGTTGTTCTTAGAA 474
Query 505 GGGCCAATAAGTGT-AGGATTCTCGTACTCGAGTACTCCTTTTGATTGGGAGATATTTGG 563
||| || | | ||||||||||||||||| || ||| || | ||| ||
Sbjct 475 ACGCCGGTAGG-GACAGGATTCTCGTACTCGAATAGTCCA----AT----A--TAT--GG 521
Query 564 GGAACAAGCGGATAAGCTAACAGCAGAGGATAACTACATGTTCTTGGTGAATTGGCTTGA 623
| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GAAACAAGGGGACAAGCCAACAGCAGAGGATAACTACATGTTCTTGGTGAATTGGCTTGA 581
Query 624 AAGGTTTCCGGAATATAAAGGACGAGACGTTTACATCT-CCGGTCAGAGTTACGCTGGCC 682
|||||||||||||||||||||| |||| ||||||| | |||||||||||||||| ||||
Sbjct 582 AAGGTTTCCGGAATATAAAGGAAGAGAAATTTACAT-TACCGGTCAGAGTTACGCCGGCC 640
Query 683 ACTATATTCCCCAACTGGCCCAGATCATCCTTCACCGTAACAACCAAACCTTCATCAATC 742
||||| |||||||||| |||||||| ||| ||||||||||||| ||||| |||||||| |
Sbjct 641 ACTATGTTCCCCAACTTGCCCAGATTATCATTCACCGTAACAAGCAAACTTTCATCAACC 700
Query 743 TACGAGGCATTTCGATCGGTAATCCAGGTCTCGATTTACTTATCGAGG-CT--GAT-AAT 798
|||||||||||| ||| ||||| ||| || | || || | ||| | || |||
Sbjct 701 TACGAGGCATTTTGATTGGTAACCCA--TCAC--TTAAC--AGGGAGATCCAAGAAGAAT 754
Query 799 GAG--AATAAATTTAT-TTTAAGTCATGGTTTGGTTTCCCAAAAAGATTTTGA-AGAGTA 854
| || |||||||| |||| ||||||||||| | |||||| || | | || | | ||
Sbjct 755 TCGGCAACAAATTTATGTTTA-GTCATGGTTTGATATCCCAACAACAAATGGACA-ATTA 812
Query 855 CAGTAAAGTCTGCGATTTT-GCCA-ACTATGATATGG-ACGAA-TGCCCAAAGATAATG- 909
| ||| |||| | | | | | |||||| ||| || || ||| ||| | |
Sbjct 813 TAACAAATTCTGT-ACCTACGACTTA-TATGAT-TGGGAC-AAGTGC--AAAT-TGGCGT 865
Query 910 CCTAAATTTAGTATTGAACAT-AACAAACAC--TTGGACGTTTACAACATATACGCTCCC 966
|| ||| || || ||| || || |||||| |||||| |||||||||||||||||||
Sbjct 866 CCCAAA---AG-ATAGAAGATCAAAAAACACGCTTGGACATTTACAACATATACGCTCCA 921
Query 967 GTGTGCCTAAACTCCACGTTAAGCAGCGAACCCAAGAAATGCACCACAATAATGGAGGTT 1026
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 922 GTGTGCCTAAACTCCACATTGAGCAGCGAACCCAAGAACTGCACCACAATAATGGAGGTT 981
Query 1027 GATCCGTGCCGTTCCAACTACGTGAAGGCTTATCTTAACAGCGAAA-ATGTTCAAGAAGC 1085
||||||||| || |||||| |||||||||||||||||| ||||| | |||||||||||
Sbjct 982 GATCCGTGCAGTGGCAACTATTTGAAGGCTTATCTTAACA-CGAAAGAGGTTCAAGAAGC 1040
Query 1086 GATGCATGCCAACACCACAAAATTACCGTACGAGTGGAAGGCTTGCAATCACTA-CTTGA 1144
|| |||||||||||||| ||||||||||| ||||||| |||||||| | | || |
Sbjct 1041 AATACATGCCAACACCACGAAATTACCGTATGAGTGGACCTCTTGCAATAAGAAACTGGG 1100
Query 1145 ATTCCGTATGGATCGACGCTGATAAAGATGCCTCAATGGTTCCTATCCTTCACGACCTGA 1204
|| | ||||| | | ||||||| ||| |||| || ||||||||||| || ||||
Sbjct 1101 -TTGGGAATGGAACAAAAATGATAAATATGTCTCATTGACACCTATCCTTCAAGAGCTGA 1159
Query 1205 TGGGTGAGGGTGTCCGAGT-ATTGGTGTATAGTGGGGACGTGGATGC-GGCT-ATTCCGT 1261
||||||||||||||||||| || | |||| | ||| |||||||| | || | ||||| |
Sbjct 1160 TGGGTGAGGGTGTCCGAGTCAT-GCTGTACAATGGAGACGTGGAC-CTGG-TGATTCCAT 1216
Query 1262 TTACAGCTACAATGGCCGTGCTGAAGACGATGAATCTAACGGTTGTAAACGAATGGCGTC 1321
||||| | | |||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 1217 TTACATCGGTAGTGGCCGTGCTGAAGTCGATGAATCTGACGGTTGTAAAGGAATGGCGTC 1276
Query 1322 CGTGGTTTACCGGAGGACAACTGGGAGGGTTCACAGAGGATTACGAACGGAACTTAACGT 1381
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |
Sbjct 1277 CGTGGTTTACCGGAGGACAGCTGGGAGGGTTCACAGAGGATTACAAAGGGAACTTAACCT 1336
Query 1382 ATGCAACTGTGAAAGGATCAGGTCATTCTGTTCCTTTGGACCAACCTGTACATGCTCTTA 1441
|| |||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 1337 TTGTAACTGTGAAAGGATCAGGTCATAGTGTTCCTACGGACCAACCTATACATGCTCTTA 1396
Query 1442 ATCTATTTACCAG-TTTCATCCGTAACACTCCTCTCCCTCAAACACCCTGA 1491
|| | |||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 1397 ATATTTTTACCAGCTTT-ATCCGTAATACTCCTCTCCCTCAAACACCCTGA 1446
> Ahg348300 jgi|Araly1|348300|fgenesh1_pg.C_scaffold_5001692
Length=1464
Score = 1291 bits (699), Expect = 0.0
Identities = 1245/1500 (83%), Gaps = 72/1500 (5%)
Strand=Plus/Plus
Query 28 ATGGGAAAACAACAAGATTGGTCCGTGACCGCTTGTATTTTCCTA-TCGTTGTCTCTAGC 86
|||||||||| ||||||||||||| ||||||||||| |||| ||| || |||||| | ||
Sbjct 1 ATGGGAAAACGACAAGATTGGTCCCTGACCGCTTGTGTTTTTCTATTC-TTGTCTTTGGC 59
Query 87 ATCACAAATCCATTGTAGTAGCCAAACACATTTTCCAAGCC------A-----C-AAGGG 134
|||||||||||||||||| ||||||||||||||| ||| || | | |||
Sbjct 60 ATCACAAATCCATTGTAGGAGCCAAACACATTTTTCAAACCGTTTGGAGCGGTCGAAGCA 119
Query 135 AGGAGCTGGTTTGTCAGGTGACACAAGCCACTTCAATTCTG-TTAGTCGCGAAAATGTGC 193
||||| ||||| ||||||||| || || |||||| | || || || || |||||
Sbjct 120 AGGAGATGGTTCGTCAGGTGATACGAG---CTTCAA-TGTGCTTCGT--CG----TGTGC 169
Query 194 TTTCGCTTAAGGAGAAAGATCTAATCGAGAAGCTCCCCGGACAACCTTCCGGCATTAGTT 253
|||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 170 TTTCGCCAAAGGAGAAAGATCTAATCAAGAAGCTCCCCGGACAACCTTCCGGCGTTAGTT 229
Query 254 TCAGACAGTACGGTGGTTATGTGGCCGTAAACGAACCAGCCACTCGGTTTTTGTACTATT 313
|||||||||| || ||||||||||| ||||||||| || || | |||||||||||||||
Sbjct 230 TCAGACAGTATGGCGGTTATGTGGCTGTAAACGAAACAACCGGTAGGTTTTTGTACTATT 289
Query 314 ATTTTGTGGAAGCCATCAAACCTAGTAAATCTACTCCTCTTGTGCTCTGGTTCAACGGAG 373
|||| |||||||||||||| || | |||||| |||||||||||| |||||||||||||||
Sbjct 290 ATTTCGTGGAAGCCATCAACCCCAATAAATCCACTCCTCTTGTGATCTGGTTCAACGGAG 349
Query 374 GACCGGGGTGCTCATCTGTAGGATTTGGGGCATTTGAAGAGCTTGGTCCATTTCGCGTAC 433
|||||| ||||||||| |||| |||||||||| ||||||||||||||| || ||||
Sbjct 350 GACCGGCCTGCTCATCTCTAGG---TGGGGCATTTCTAGAGCTTGGTCCATTCCGTGTAC 406
Query 434 ATAGCGATGGCAAAACGCTTTACCGCAATCCTTATTCATGGAACAACGAGGCGAACATGT 493
||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 407 ATAGCGACGGCAAAACGCTTTTCCGCAATCCTTATTCATGGAACAACGAGGCAAACGTGT 466
Query 494 TGTTCTTCGAAGGGCCAATAAGTG-TAGGATTCTCGTACTCGAGTACTCCTTTTGATTGG 552
||||||| ||| ||| ||| | ||||||||||||||||| |||||| |||||| |
Sbjct 467 TGTTCTTAGAATCGCCGGTAA-CGACAGGATTCTCGTACTCGAATACTCCAATTGATTTG 525
Query 553 GA-GATATTTGGGGAA-CAAGCGGATAAGCTAACAGCAGAGGATAACTACATGTTCTTGG 610
|| || | || ||||| |||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 526 GAGGA-A-TTCGGGAACCAAGGGGACAAGGTAACAGCAGAGGATAACTACATGTTCTTGG 583
Query 611 TGAATTGGCTTGAAAGGTTTCCGGAATATAAAGGACGAGACG-TTTACATCTCCGGTCAG 669
|||||||||||||||| |||||||||||||||||| |||| | ||||||| ||||||||
Sbjct 584 TGAATTGGCTTGAAAGATTTCCGGAATATAAAGGAAGAGA-GATTTACATAGCCGGTCAG 642
Query 670 AGTTACGCTGGCCACTATATTCCCCAACTGGCCCAGATCATCCTTCACCGTAACAACCAA 729
|||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 643 AGTTACGCCGGCCACTATGTTCCCCAACTTGCCCAGATCATCCTTCACCGTAACAAGCAA 702
Query 730 ACCTTCATCAATCTACGAGGCATTTCGATCGGTAATCCAGGTCTCGATTTACTTATCGAG 789
||||||||||| |||| |||||||| ||||||||||||| |||| ||| ||| ||
Sbjct 703 ACCTTCATCAACCTACAAGGCATTTTGATCGGTAATCCATCACTCGCCGCACTGATCCAG 762
Query 790 G--CTGATAATGAGA-ATAAATTTATTTTAAGTCATGGTTTGGTTTCCCAAAAAGATTTT 846
| | ||| | | | |||||||| ||||||||||||||| | |||||| || | |
Sbjct 763 GAGC-GAT--TCACCTACAAATTTATGTTAAGTCATGGTTTGATGTCCCAACAACAAATG 819
Query 847 GA-AGAGTACAGTAAAGTCTGCGATTTTGCCA--ACT-AT--GATA-TGGACGAA-TGCC 898
|| | | || | ||| ||||| || || | ||| || |||| || || || |||
Sbjct 820 GACA-ATTATAACAAATTCTGC-ATGA-GCGAGGACTTATATGATAATG-AC-AAGTGCA 874
Query 899 CAAAGATAATGCCTAAATTTAGTAT-TGAACATAACAAA-CACTTGGACGTTTACAACAT 956
|| | | | | ||||| || | | | || || || ||||||||| |||||||||
Sbjct 875 CATTGCTGACACAAAAATTC-GTCTAT-A-CA-AA-AACGCACTTGGACACTTACAACAT 929
Query 957 ATACGCTCCCGTGTGCCTAAACTCCACGTTAAGCAGCGAACCCAAGAAATGCACCACAAT 1016
||||||||| |||||||||||||||||||| || ||| || ||||||||||||||||| |
Sbjct 930 ATACGCTCCTGTGTGCCTAAACTCCACGTTGAGAAGCAAATCCAAGAAATGCACCACAGT 989
Query 1017 AATGGAGGTTGATCCGTGCCGTTCCAACTACGTGAAGGCTTATCTTAACAGCGAAAATGT 1076
||||||||||||||||||| || | ||||| ||||||||||||||||||| |||| ||
Sbjct 990 AATGGAGGTTGATCCGTGCAGTGGCGACTACATGAAGGCTTATCTTAACAGAAAAAAGGT 1049
Query 1077 TCAAGAAGCGATGCATGCCAACACCACAAAATTACCGTACGAGTGGAAGGCTTGCAATCA 1136
|||| ||||||| |||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1050 TCAAAAAGCGATACATGCCAACACCACAAAATTACCGTACGAGTGGACCTCTTGCCATGA 1109
Query 1137 CT-ACTTGAATTCCGTATGGATCGAC-GCTGATAAAGATGCCTCAATGGTTCCTATCCTT 1194
| | |||| | ||||||| | || | || |||||||| ||||||| |||||||||
Sbjct 1110 CGCA-TTGAGTGAGGTATGGAGC-ACTGATGTTAAAGATGTCTCAATGACACCTATCCTT 1167
Query 1195 CACGACCTGATGGGTGAGGGTGTCCGAGT-ATTGGTGTATAGTGGGGACGTGGATGC-GG 1252
||||| || |||||||||||||| ||||| || | | | | ||| |||||||| | ||
Sbjct 1168 CACGAGCTTATGGGTGAGGGTGTTCGAGTCAT-GATCCACAATGGAGACGTGGAC-CTGG 1225
Query 1253 CTATTCCGTTTACAGCTACAATGGCCGTGCTGAAGACGATGAATCTAACGGTTGTAAACG 1312
||||| ||| || ||||| |||||||||||||||| |||||||| ||||||||||| |
Sbjct 1226 AGATTCCATTTCCATCTACAGTGGCCGTGCTGAAGACAATGAATCTGACGGTTGTAAAGG 1285
Query 1313 AATGGCGTCCGTGGTTTACCGGAGGACAACTGGGAGGGTTCACAGAGGATTACGAACGGA 1372
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||
Sbjct 1286 AATGGCGTCCGTGGTTTACCGGAGGACAGCTGGGAGGGTTCGCAGAGGATTACAAAGGGA 1345
Query 1373 ACTTAACGTATGCAACTGTGAAAGGATCAGGTCATTCTGTTCCTTTGGACCAACCTGTAC 1432
||||||| | || ||||||||||||| |||||||| ||||||| |||||||||| |||
Sbjct 1346 ACTTAACCTTTGTAACTGTGAAAGGAGCAGGTCATAGTGTTCCTACGGACCAACCTATAC 1405
Query 1433 ATGCTCTTAATCTATTTACCAG-TTTCATCCGTAACACTCCTCTCCCTCAAACACCCTGA 1491
||||||||||| | |||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 1406 ATGCTCTTAATATTTTTACCAGCTTT-ATCCGTAATACTCCTCTCCCTCAAACACCCTGA 1464
> Ahg938069 jgi|Araly1|938069|scaffold_502260.1
Length=335
Score = 318 bits (172), Expect = 7e-86
Identities = 275/323 (85%), Gaps = 13/323 (4%)
Strand=Plus/Plus
Query 1174 GCCTCAATGGTTCCTATCCTTCACGACCTGATGGGTGAGGGTGTCCGAGTATTGGTGTAT 1233
||||||||| |||||||||| ||||| |||||| |||||||||||||||| | ||||||
Sbjct 16 GCCTCAATGATTCCTATCCTCCACGAGCTGATGAGTGAGGGTGTCCGAGTCTGGGTGTAC 75
Query 1234 AGTGGGGACGTGGATGC-GGCTA-TTCCGTTTACAGCTACAATGGCCGTGCTGAAGACGA 1291
| ||| || |||| | ||| | |||| ||| || ||||||||| ||||||||||| ||
Sbjct 76 AATGGAGATTTGGA-CCTGGC-AGTTCCATTTTCATCTACAATGGACGTGCTGAAGAAGA 133
Query 1292 TGAATCTAACGGTTGTAAACGAATGGCGTCCGTGGTTTACCGGAGGACAACTGGGAGGGT 1351
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 134 TGAATCTAACGATTGTAAAGGAATGGCGTCCGTGGTTTACCGGAGGACAGCTGGGAGGGT 193
Query 1352 TCACAGAGGATTACGAACGGAACTTAACGTATGCAACTGTGAAAGGATCAGGTCATTCTG 1411
||||| | |||||| || |||| || ||||||||||||||||||||| |||||||| ||
Sbjct 194 TCACACAAGATTACCAAGGGAATTTTACGTATGCAACTGTGAAAGGAGCAGGTCATGATG 253
Query 1412 TTCCTTTGGACCAACCTGTACATGCTCTTAATCT----A-T-TT-ACCAG-TTTCATCCG 1463
| ||| |||||||||| |||||||||||||||| | | || ||||| |||| || |
Sbjct 254 TGCCTAAGGACCAACCTATACATGCTCTTAATCTCTTTAGTCTTTACCAGCTTTCTTC-G 312
Query 1464 TAACACTCCTCTCCCTCAAACAC 1486
|||||||||||| ||||||||||
Sbjct 313 TAACACTCCTCTACCTCAAACAC 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5