BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05900.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905911 jgi|Araly1|905911|Al_scaffold_0003_3039 1242 0.0
> Ahg905911 jgi|Araly1|905911|Al_scaffold_0003_3039
Length=933
Score = 1242 bits (672), Expect = 0.0
Identities = 851/936 (91%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 10 GTGGGGCTCCATTCAGGCACCATTGACATGGAGTTTATAGGAGTTGAAGATCA-CGGGGA 68
|||||||||||| ||| |||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 10 GTGGGGCTCCATGCAGCCACCGTTGACATGGAGTTTATAGGAGTTGAAGAT-AGCGGGGA 68
Query 69 -CGAGGAGGGTAAACAGATTGCAGTTAGTGTCATCTCTTCAGGGAAAAATGCTGACAAAA 127
|| ||||| |||||| || ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 69 CCG-GGAGGATAAACAAATCGCAGTTAGTATCATCTCTTCAGGGAAAAATGCTGATAAAA 127
Query 128 CCGAAGATCCCGATTCATTAATATTTACCGGGTTTGGTGGTACGGACATGTATCATGGA- 186
|||||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||| ||
Sbjct 128 CCGAAGATCCGGATTCCTTGATATTTACGGGGTTTGGTGGTACGGACAAGTAACAT-GAT 186
Query 187 CAACCATGTAATCAGAAACTTGAGAGGTTGAATATTCCACTAGAAGCCGCTTTTCGGAAG 246
||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 187 CAACCATCTGATCAGAAACTTGAGAGGTTGAATATTCCACTAGAGGCAGCTTTTCGGAAG 246
Query 247 AAAAGTATTGTGAGAGTGGTTAGATGTATGAAGGATGAAAAAAGGACAAATGGTAATATT 306
|||||||||||||||||||||||| ||||||||||||| || |||||| |||||||| ||
Sbjct 247 AAAAGTATTGTGAGAGTGGTTAGAGGTATGAAGGATGAGAAGAGGACACATGGTAATGTT 306
Query 307 TACATATATGATGGAACATATATGATTACTAATAGGTGGGAAGAGGAAGGTCAAAATGGG 366
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 307 TACATATATGATGGAACATATATGATTACTAATATGTGGCAAGAGGAAGGTCAAAATGGG 366
Query 367 TTCATAGTGTTTAAATTCAAATTGGTGAGAGAGCCTGATCAAAAACCCGCTTTCGGTATT 426
||||| ||||| |||||| ||||||| ||||| |||||||||||||||||||| |||||
Sbjct 367 TTCATTGTGTTCAAATTCCAATTGGTTAGAGAACCTGATCAAAAACCCGCTTTTGGTATA 426
Query 427 TGGAAATCGA-TACAGAATTGGAGGAATGGTTTGAGTATAAGACCAGGTCTTATCCTTGA 485
|||||||| | || | ||||||| ||||| |||||||| ||||||||||||||| ||| |
Sbjct 427 TGGAAATC-AGTAAAAAATTGGAAGAATGATTTGAGTACAAGACCAGGTCTTATTCTTCA 485
Query 486 AGATCTCTCTAATGGAGCTGAGAATCTAAAGGTTTGTTTGGTGAATGAAGTTGACAAGGA 545
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 AGATCTCTCTAATGGAGCTGAGAATCTAAAGGTTTGTGTGGTGAATGAAGTTGACAAGGA 545
Query 546 GAATGGTCCTGCCTTGTTTAGGTATGTCACTTCACTTATA-CATGAAGTAATCAATAATA 604
|||||||||| | ||||||| ||||||||||| | | | ||||| |||||| ||||
Sbjct 546 GAATGGTCCTTCTTTGTTTACTTATGTCACTTCGC-TGCACCATGAGGTAATC---AATA 601
Query 605 TTCCATCGATGGTTGATCGTTGCGCTTGTGGACGTAGATCATGTGGTTCAAAACA-TGTA 663
||| | |||||||||||| |||||||||||||||||||||||||||| ||||| | |||
Sbjct 602 TTCGACCGATGGTTGATCCTTGCGCTTGTGGACGTAGATCATGTGGTCCAAAA-AGTGTC 660
Query 664 TTCAGAGAAAAGCTTAGTGTGTCATCGTCATTGGTGATTAGTGCAAAGAAGTCAGGTAAT 723
|| ||||| | ||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 661 TT-TGAGAATA--TTAGTGTTTCATCATCATTGGTGATTAGTGCAAAGAAGTCAGGAAAT 717
Query 724 GTGGCTCGATTTATGAACCATAGTTGCTCACCCAACGTGTTTTGGCAGTCTATTGCTCGT 783
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||
Sbjct 718 GTGGCTCGATTTATGAACCATAGTTGCTCACCCAACGTTTTTTGGCAGCCGATTTCTCGT 777
Query 784 GAACAAAATGGTTTATGGTGTCTTTACATTGGCTTTTTTGCAATGAAACATATTCCTCCA 843
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAAGAAAATGGTTTATGGTGTCTTTACATTGGCTTTTTTGCAATGAAACATATTCCTCCA 837
Query 844 TTAACGGAGTTGAGATATGATTATGGAAAATCTAGAGGTGGTGGGAAGAAGATGTGTCTA 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 TTAACGGAGTTGAGATATGATTATGGAAAATCTAGAGGAGGTGGGAAGAAGATGTGTCTA 897
Query 904 TGTAGAACGAAGAAATGTTGTGGTTCATTTGGATAA 939
|||||| | ||||||||||||||||| |||||||||
Sbjct 898 TGTAGATCAAAGAAATGTTGTGGTTCTTTTGGATAA 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5