BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05910.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905913 jgi|Araly1|905913|Al_scaffold_0003_3041 870 0.0
> Ahg905913 jgi|Araly1|905913|Al_scaffold_0003_3041
Length=576
Score = 870 bits (471), Expect = 0.0
Identities = 541/576 (94%), Gaps = 0/576 (0%)
Strand=Plus/Plus
Query 16 ATGAAAGCAGTGGTGAGCAAGTTGTATTGTTCCTCGATGGAGGAAGTGATGGTGGTGAGA 75
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAAGCAGTGGTGAGCAAGTTGCATTGTTCCTCGATGGAGGAGGTGATGGTGGTGAGA 60
Query 76 CGACGGCCACACGTGGTTAACGGCGGTGGCTTTGTGGTGACAGATTACAAAGAAAAGATA 135
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 61 CGGCGGCCACACGTGGTTAACGGCGGTGGCTTTGTGGTGACAGATTTCAAAGAAAATATC 120
Query 136 GTTTTCAAGATCGACGGTTGTGGAGTTCTTGGAACCAAAGGAGAGTTAGTTCTCAGAGAT 195
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GTTTTCAAGATCGACGGTTGTGGAGTTCTTGGCACCAAAGGAGAGTTAGTTCTCAGAGAT 180
Query 196 AGTGATGGCAACGATTTGCTTCTCATCCACAAAAAGGGAGGAGTGGTGCAGGCTTTGAGC 255
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 181 GGTGATGGCAACGATTTGCTTCTCATCAACAAAAAGGGAGGAATGGTGCAGGCTTTGAGC 240
Query 256 ATTCATAACAAGTGGAAAGGTTATAGTTACGACTACCAAGGAAGTCCTAAACCGGTTTTC 315
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ATTCATAACAAGTGGAAAGGTTATAGTTACGACTACCAAGGGAGTCCTAAACCGGTTTTC 300
Query 316 ACGTTGAGGGATCCCAAACACTCTTGCTTCTCCATAACCAGTTCAATCCGCATCTCGGTT 375
| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 301 TCATTGAGGGATCCTAAACACTCTTGCTTCTCCATAATCGGTTCAATCCGCATCTCGGTC 360
Query 376 GGACCGGGGAATTGCTACTTTGATGTTAAAGGGTATTTCCCGGATAGGGATTGTAGCATC 435
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 361 CAACCGGGGAATTGCTACTTTGATGTTAAAGGATATTTCCCGGATAGGGATTGTGGCATC 420
Query 436 GTTGATTCCAAAGGAAATGTCATTGCACAAGTAAAAGAATGGATTGGGAGTAGAGATATA 495
||||||||| |||||| ||||||| |||||||||||||||||||| || ||||| |||
Sbjct 421 ATTGATTCCACCGGAAATATCATTGCTCAAGTAAAAGAATGGATTGGTAGCAGAGACATA 480
Query 496 TATAAGGTGGTGACAAAACCAAGTGTGGATAAAGCTTTTGTTTTTGGAGTAATCGCGGTT 555
||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 481 TATAAGGTGGTGATAAAACCAAGTGTAGATAAAGCTTTTGTTTTTGGAGTTATCGCGGTA 540
Query 556 CTTGACTATATATATGGTGAATCTACAAGTTGTTGA 591
|| |||||||| ||||||||||||||||||||||||
Sbjct 541 CTCGACTATATCTATGGTGAATCTACAAGTTGTTGA 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5