BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G05914.1 Length=1392 Score E Sequences producing significant alignments: (Bits) Value Ahg320270 jgi|Araly1|320270|fgenesh1_pm.C_scaffold_4000327 623 1e-177 Ahg331707 jgi|Araly1|331707|fgenesh1_pm.C_scaffold_8001050 176 4e-43 > Ahg320270 jgi|Araly1|320270|fgenesh1_pm.C_scaffold_4000327 Length=927 Score = 623 bits (337), Expect = 1e-177 Identities = 708/881 (80%), Gaps = 49/881 (6%) Strand=Plus/Plus Query 455 CACCGCAATTGTCTTCGCAAGCT-TCAGATTGCCGCCTCTCCCCTT-TCCTGTCTTGGCA 512 |||||||| | |||||||||| | || || |||||| | ||| | ||||| ||||| Sbjct 11 CACCGCAAATCTCTTCGCAAG-TCTCGGACAGCCGCCGC-ATTCTTCTTCTGTCGTGGCA 68 Query 513 TTCCAAAGAGAAACTAGGGTTTTTCCCAGTGGACCTACTTTCTTC--TTTTGGCCCAA-C 569 ||||||| |||||||||||||| ||||||||||||| |||| | |||||||||| | Sbjct 69 ATCCAAAGTGAAACTAGGGTTTTCCCCAGTGGACCTA--TTCTCCAACTTTGGCCCAATC 126 Query 570 CCTATTTAGAAGGCCCAAGCCCATCAATTGGATTAACTATCTTAAGACaaaaaaaT-TCA 628 || | |||||||||||||| || | |||| |||| |||||||| | || | | ||| Sbjct 127 CC-ACCAAGAAGGCCCAAGCCTATTAGTTGGTTTAAAAATCTTAAGGC-TAATATTCTCA 184 Query 629 GGTCTGTTTCCTTTATTTC-TATGTTAAATCCAAGACATAACTTGTGTCGATCTTCTCTA 687 |||| |||| | ||| ||| |||||||| ||||| ||| | |||||||||||| ||||| Sbjct 185 GGTCCGTTTTCATTA-TTCTTATGTTAAGCCCAAGTCATTATTTGTGTCGATCTCCTCTA 243 Query 688 ATCCGTGGT-TATGGACTCCATGTGAGAGAGTTATCACCATTGTTGTCTTGACTTTGCAT 746 ||| |||| | |||||| ||||||||||| |||||||||||||| |||| |||||||| Sbjct 244 CTCCATGGTCGA-GGACTCTATGTGAGAGAGGTATCACCATTGTTGCCTTGGCTTTGCAT 302 Query 747 ATA-T-TGTGGGATATTCCTGGTTTTAGTTGTATTTAGGGGCTTATGGTATGTTTACAAA 804 ||| | | | || | ||||||| |||||||| ||||||| ||| ||||||| ||||||| Sbjct 303 ATATTCTATACGA-A-TCCTGGTATTAGTTGTTTTTAGGGACTTGTGGTATGCTTACAAA 360 Query 805 GGCTTGAAGAACCT-TGATCGAAATATCTCGAACCGATTGTGCCGAAGTGTTTTTTGTGG 863 ||||||||||| || |||| || |||||||||||| || ||||| ||||| |||||| Sbjct 361 GGCTTGAAGAA-CTATGATTTAATTATCTCGAACCGTTTTTGCCGGAGTGTGAATTGTGG 419 Query 864 CT-TTCGACCACTTGTGCTT-A-TCGACC--ATTATGCTCCAATTAGCTCATCGAGCGTC 918 | || ||| | || || || | | | || ||| | | |||| ||||||| | ||| Sbjct 420 -TATTGGACTAGTT-TGGTTCAGT-GTCCAAATT-T-CACCAAGCAGCTCAT--A-TGTC 471 Query 919 GCTCTCAAGCAGCGT-ACCTTCACCATCATCTCCATCA-TCAAGTTCCTAAACGT-TAAA 975 | | ||||||| | | ||| |||||| ||||||||||| || || ||||| | | ||| Sbjct 472 GTTTTCAAGCATCTTAACC-TCACCACCATCTCCATCATTC-AGATCCTATGC-TACAAA 528 Query 976 GTTCTTATTGC-ATTTTATTGGAGATG-TCTAAACCT-TTCGCTTTGGGTTTCAAAGCTA 1032 |||| | | || | ||||| ||||| | ||||||||| || ||||||||||||||||||| Sbjct 529 GTTCATGTCGCGA-TTTATCGGAGA-GATCTAAACCTGTT-GCTTTGGGTTTCAAAGCTA 585 Query 1033 TCATCAATCGACTATAGCACCATAGTCTCCCGAATCCTTGTTATTGTGCTACCTTGGTTA 1092 || |||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||| || Sbjct 586 TCCTCAACCGACTATAGAACCATAGTCTCTCGAATCCTTGTTATTGCGCTACCATGGGTA 645 Query 1093 GTGCAGCTCTCTATGTTGAGAAACTTATCATTGATTCCTTC-GTTAACGTCTCAGGGTCC 1151 |||||||| || | |||||||| || ||||||||| ||| | |||||| ||| ||| Sbjct 646 CTGCAGCTCACTCCGATGAGAAACGTAACATTGATTCATTCAG-CAACGTCACAGCGTCT 704 Query 1152 TATGACCATGACTAATCTGGCGTCCTTCGAATCCTTCGAGGATGCTTTCTCGATTCACCG 1211 | |||||||||| |||||| |||| ||||||||| ||||||||| | |||||||||||| Sbjct 705 TTTGACCATGACCAATCTGTCGTCATTCGAATCCCTCGAGGATGATCACTCGATTCACCG 764 Query 1212 TGATCTCACTTGTTTCAATGCGCTTCCAAGCTATGGTTTCAAAGCTCTCATGGATTTAAA 1271 ||||||||| ||| |||||| |||||||||| | || |||||||||||||||||||||| Sbjct 765 TGATCTCACATGTCTCAATGTGCTTCCAAGCCCTTGTCTCAAAGCTCTCATGGATTTAAA 824 Query 1272 ATCGATGTATCGTATCTTTCATTTTATGACATTGGGGAATG 1312 ||||||| | | ||||| || ||||||| |||||||||||| Sbjct 825 ATCGATGAACCTTATCTATCTTTTTATGGCATTGGGGAATG 865 > Ahg331707 jgi|Araly1|331707|fgenesh1_pm.C_scaffold_8001050 Length=762 Score = 176 bits (95), Expect = 4e-43 Identities = 139/160 (87%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 1154 TGACCATGACTAATCTGGCGTCCTTCGAATCCTTCGAGGATGCTTTCTCGATTCACCGTG 1213 |||||||||| |||||| |||||||||||||| ||||||||| | ||||||||||||||| Sbjct 584 TGACCATGACCAATCTGTCGTCCTTCGAATCCCTCGAGGATGATCTCTCGATTCACCGTG 643 Query 1214 ATCTCACTTGTTTCAATGCGCTTCCAAGCT-ATGGTTTCAAAGCTCTCATGGATTTAAAA 1272 ||||||| ||| |||||| ||||||||| | | | ||||||||||||||||||||||| Sbjct 644 ATCTCACATGTCTCAATGTGCTTCCAAG-TCCTTGCCTCAAAGCTCTCATGGATTTAAAA 702 Query 1273 TCGATGTATCGTATCTTTCATTTTATGACATTGGGGAATG 1312 |||||| | | ||||| || ||||||| ||||||| |||| Sbjct 703 TCGATGAACCTTATCTATCTTTTTATGGCATTGGG-AATG 741 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52031274670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5