BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05914.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320270 jgi|Araly1|320270|fgenesh1_pm.C_scaffold_4000327 623 1e-177
Ahg331707 jgi|Araly1|331707|fgenesh1_pm.C_scaffold_8001050 176 4e-43
> Ahg320270 jgi|Araly1|320270|fgenesh1_pm.C_scaffold_4000327
Length=927
Score = 623 bits (337), Expect = 1e-177
Identities = 708/881 (80%), Gaps = 49/881 (6%)
Strand=Plus/Plus
Query 455 CACCGCAATTGTCTTCGCAAGCT-TCAGATTGCCGCCTCTCCCCTT-TCCTGTCTTGGCA 512
|||||||| | |||||||||| | || || |||||| | ||| | ||||| |||||
Sbjct 11 CACCGCAAATCTCTTCGCAAG-TCTCGGACAGCCGCCGC-ATTCTTCTTCTGTCGTGGCA 68
Query 513 TTCCAAAGAGAAACTAGGGTTTTTCCCAGTGGACCTACTTTCTTC--TTTTGGCCCAA-C 569
||||||| |||||||||||||| ||||||||||||| |||| | |||||||||| |
Sbjct 69 ATCCAAAGTGAAACTAGGGTTTTCCCCAGTGGACCTA--TTCTCCAACTTTGGCCCAATC 126
Query 570 CCTATTTAGAAGGCCCAAGCCCATCAATTGGATTAACTATCTTAAGACaaaaaaaT-TCA 628
|| | |||||||||||||| || | |||| |||| |||||||| | || | | |||
Sbjct 127 CC-ACCAAGAAGGCCCAAGCCTATTAGTTGGTTTAAAAATCTTAAGGC-TAATATTCTCA 184
Query 629 GGTCTGTTTCCTTTATTTC-TATGTTAAATCCAAGACATAACTTGTGTCGATCTTCTCTA 687
|||| |||| | ||| ||| |||||||| ||||| ||| | |||||||||||| |||||
Sbjct 185 GGTCCGTTTTCATTA-TTCTTATGTTAAGCCCAAGTCATTATTTGTGTCGATCTCCTCTA 243
Query 688 ATCCGTGGT-TATGGACTCCATGTGAGAGAGTTATCACCATTGTTGTCTTGACTTTGCAT 746
||| |||| | |||||| ||||||||||| |||||||||||||| |||| ||||||||
Sbjct 244 CTCCATGGTCGA-GGACTCTATGTGAGAGAGGTATCACCATTGTTGCCTTGGCTTTGCAT 302
Query 747 ATA-T-TGTGGGATATTCCTGGTTTTAGTTGTATTTAGGGGCTTATGGTATGTTTACAAA 804
||| | | | || | ||||||| |||||||| ||||||| ||| ||||||| |||||||
Sbjct 303 ATATTCTATACGA-A-TCCTGGTATTAGTTGTTTTTAGGGACTTGTGGTATGCTTACAAA 360
Query 805 GGCTTGAAGAACCT-TGATCGAAATATCTCGAACCGATTGTGCCGAAGTGTTTTTTGTGG 863
||||||||||| || |||| || |||||||||||| || ||||| ||||| ||||||
Sbjct 361 GGCTTGAAGAA-CTATGATTTAATTATCTCGAACCGTTTTTGCCGGAGTGTGAATTGTGG 419
Query 864 CT-TTCGACCACTTGTGCTT-A-TCGACC--ATTATGCTCCAATTAGCTCATCGAGCGTC 918
| || ||| | || || || | | | || ||| | | |||| ||||||| | |||
Sbjct 420 -TATTGGACTAGTT-TGGTTCAGT-GTCCAAATT-T-CACCAAGCAGCTCAT--A-TGTC 471
Query 919 GCTCTCAAGCAGCGT-ACCTTCACCATCATCTCCATCA-TCAAGTTCCTAAACGT-TAAA 975
| | ||||||| | | ||| |||||| ||||||||||| || || ||||| | | |||
Sbjct 472 GTTTTCAAGCATCTTAACC-TCACCACCATCTCCATCATTC-AGATCCTATGC-TACAAA 528
Query 976 GTTCTTATTGC-ATTTTATTGGAGATG-TCTAAACCT-TTCGCTTTGGGTTTCAAAGCTA 1032
|||| | | || | ||||| ||||| | ||||||||| || |||||||||||||||||||
Sbjct 529 GTTCATGTCGCGA-TTTATCGGAGA-GATCTAAACCTGTT-GCTTTGGGTTTCAAAGCTA 585
Query 1033 TCATCAATCGACTATAGCACCATAGTCTCCCGAATCCTTGTTATTGTGCTACCTTGGTTA 1092
|| |||| ||||||||| ||||||||||| |||||||||||||||| |||||| ||| ||
Sbjct 586 TCCTCAACCGACTATAGAACCATAGTCTCTCGAATCCTTGTTATTGCGCTACCATGGGTA 645
Query 1093 GTGCAGCTCTCTATGTTGAGAAACTTATCATTGATTCCTTC-GTTAACGTCTCAGGGTCC 1151
|||||||| || | |||||||| || ||||||||| ||| | |||||| ||| |||
Sbjct 646 CTGCAGCTCACTCCGATGAGAAACGTAACATTGATTCATTCAG-CAACGTCACAGCGTCT 704
Query 1152 TATGACCATGACTAATCTGGCGTCCTTCGAATCCTTCGAGGATGCTTTCTCGATTCACCG 1211
| |||||||||| |||||| |||| ||||||||| ||||||||| | ||||||||||||
Sbjct 705 TTTGACCATGACCAATCTGTCGTCATTCGAATCCCTCGAGGATGATCACTCGATTCACCG 764
Query 1212 TGATCTCACTTGTTTCAATGCGCTTCCAAGCTATGGTTTCAAAGCTCTCATGGATTTAAA 1271
||||||||| ||| |||||| |||||||||| | || ||||||||||||||||||||||
Sbjct 765 TGATCTCACATGTCTCAATGTGCTTCCAAGCCCTTGTCTCAAAGCTCTCATGGATTTAAA 824
Query 1272 ATCGATGTATCGTATCTTTCATTTTATGACATTGGGGAATG 1312
||||||| | | ||||| || ||||||| ||||||||||||
Sbjct 825 ATCGATGAACCTTATCTATCTTTTTATGGCATTGGGGAATG 865
> Ahg331707 jgi|Araly1|331707|fgenesh1_pm.C_scaffold_8001050
Length=762
Score = 176 bits (95), Expect = 4e-43
Identities = 139/160 (87%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 1154 TGACCATGACTAATCTGGCGTCCTTCGAATCCTTCGAGGATGCTTTCTCGATTCACCGTG 1213
|||||||||| |||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct 584 TGACCATGACCAATCTGTCGTCCTTCGAATCCCTCGAGGATGATCTCTCGATTCACCGTG 643
Query 1214 ATCTCACTTGTTTCAATGCGCTTCCAAGCT-ATGGTTTCAAAGCTCTCATGGATTTAAAA 1272
||||||| ||| |||||| ||||||||| | | | |||||||||||||||||||||||
Sbjct 644 ATCTCACATGTCTCAATGTGCTTCCAAG-TCCTTGCCTCAAAGCTCTCATGGATTTAAAA 702
Query 1273 TCGATGTATCGTATCTTTCATTTTATGACATTGGGGAATG 1312
|||||| | | ||||| || ||||||| ||||||| ||||
Sbjct 703 TCGATGAACCTTATCTATCTTTTTATGGCATTGGG-AATG 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5