BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05940.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930902 jgi|Araly1|930902|scaffold_303359.1 2150 0.0
Ahg355547 jgi|Araly1|355547|fgenesh1_pg.C_scaffold_7002720 793 0.0
Ahg481810 jgi|Araly1|481810|fgenesh2_kg.4__870__AT2G28930.1 119 8e-26
Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1 97.1 4e-19
> Ahg930902 jgi|Araly1|930902|scaffold_303359.1
Length=1459
Score = 2150 bits (1164), Expect = 0.0
Identities = 1372/1466 (94%), Gaps = 39/1466 (3%)
Strand=Plus/Plus
Query 14 AAAAGAAACACAAAATCAACAACAATGGCGGTGAAGAAGAAAGTTTCATGGAGATCACTA 73
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAAGAAACAC-AAAT---CAACAATGGCGGTGAAGAAGAAAGTTTCATGGAGATCATTA 56
Query 74 ATCGTTGGATGTTTAGGAGATCCAGAAACCCTAATGGCATCTTCAAAGAAACCTAAAAGA 133
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 57 ATCGTTGGATGTTTAGGAGATCCAGAAACCCTAGTGGCTTCTTCAAAGAAACCTAAAAGA 116
Query 134 AAAAATGACGTCATCAAGAAACAGAGCTCTTTTCAAAGACTATCGATACTTGATATGAGC 193
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 117 AAAGATGACGTCATCAAGAAACAGAGCTCTTTTCAAAGACTATCGATTCTTGATATGAGC 176
Query 194 AATCCAAGTTCCAACACTTTGTCAGAAGATCTATCGATTTCTTTGGCCGGATCAGATCTT 253
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 177 AATCCAAGTTCCAACACTTTATCAGAAGATCTATCGATTTCTTTGGCCGGATCAGATCTC 236
Query 254 CATGTGTTTACCCTAGCGGAGCTTAAAGTCATTACACAAAGCTTTTCATCGACCAATTTT 313
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 CATGTGTTTACCCTAGCAGAGCTTAAAGTCATTACACAAAGCTTTTCATCGACTAATTTC 296
Query 314 CTAGGTGAAGGTGGGTTTGGTCCTGTTCATAAGGGTTTCATTGATGATAAGCTACGTCCT 373
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 CTCGGTGAAGGAGGGTTTGGTCCTGTTCATAAGGGTTTCATCGATGATAAGCTACGTCCT 356
Query 374 GGTCTTAAAGCTCAGCCTGTTGCTGTTAAATTGCTTGATCTTGAAGGTCTTCAAGGTCAC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGTCTTAAAGCTCAGCCTGTTGCTGTTAAATTGCTTGATCTTGAAGGTCTTCAAGGTCAC 416
Query 434 CGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATTGAAGCACAAAAATTTGGTGAAA 493
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 417 CGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATTGAAGCATAAAAACTTGGTGAAA 476
Query 494 TTGATTGGTTATTGTTGTGAGGAAGAACATAGAACTCTTGTTTATGAGTTCATGCCTCGT 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTGATTGGTTATTGTTGTGAGGAAGAACATAGAACTCTTGTTTATGAGTTCATGCCTCGT 536
Query 554 GGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTGCCTCGCTTCCATGGTCAACAAGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTGCCTCGCTTCCATGGTCAACAAGA 596
Query 614 ATGAAGATCGCTCATGGAGCTGCAACAGGACTTCAATTTCT-ACACGAAGCTGAAAATCC 672
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 597 ATGAAGATCGCTCATGGAGCTGCAACAGGACTTCAATT-CTTACACGAAGCCGAAAATCC 655
Query 673 TGTTATCTATCGGGATTTCAAAGCCTCCAATATCTTGTTAGATTCCGATTACACGGCGAA 732
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 656 CGTTATCTATCGGGATTTCAAAGCCTCGAATATCTTGTTAGATTCGGATTACACGGCGAA 715
Query 733 ACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGAGACGACACTCATGTGTCAAC 792
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 ACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGAGACGACACTCACGTGTCAAC 775
Query 793 TCGAGTGATGGGCACACAAGGCTACGCAGCTCCTGAATACATCATGACCGGTCATTTAAC 852
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 776 GCGAGTGATGGGCACACAAGGCTACGCGGCTCCTGAATACATCATGACCGGTCATTTAAC 835
Query 853 AGCAAGAAGTGACGTATACAGCTTTGGAGTTGTGTTGCTAGAGCTTTTGACCGGACGGAG 912
||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||| ||
Sbjct 836 AGCAAGAAGTGACGTGTACAGCTTCGGAGTCGTGTTGCTCGAGCTTTTGACTGGACGAAG 895
Query 913 ATCAGTAGACAAAAAGAGATCATCGAGGGAACAAAACCTTGTGGACTGGGCTCGTCCAAT 972
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 896 ATCAGTAGACAAAAAGAGATCATCGAGGGAACAGAACCTAGTGGACTGGGCTCGTCCAAT 955
Query 973 GCTCAATGACCCACGTAAACTATCTCGAATCATGGACCCGAGACTTGAAGGTCAGTACTC 1032
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 956 GCTCAATGACCCACGTAAACTATGTCGAATCATGGACCCGAGACTTGAAGGTCAGTACTC 1015
Query 1033 AGAGACAGGAGCAAGAAAAGCAGCAACATTGGCTTACCAATGCTTAAGCCATCGACCCAA 1092
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1016 AGAGACAGGAGCAAGAAAAGCAGCAACATTGGCTTACCAATGTTTAAGCCACCGACCCAA 1075
Query 1093 GAACCGGCCATGTATGAGTGCCGTCGTCTCTATACTCAATGATCTTAAAGACTATAATGA 1152
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1076 GAACCGGCCTTGTATGAGTGCCGTCGTCTCTATACTCAATGATCTTAAGGACTATAATGA 1135
Query 1153 TATTCCTATGGGGACTTTCACTTACACGGTGCCAAACACTCCGGACAA-T-A-------A 1203
|||| |||||||||| |||||||||||||||||||||||||||||||| | | |
Sbjct 1136 TATTACTATGGGGACATTCACTTACACGGTGCCAAACACTCCGGACAAGTCAGTCTCGGA 1195
Query 1204 -A-----GAAGATGATGGTCGTGTTGGTAATAAGCCACGTAAGAGTAGtcatcatcatca 1257
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CAATAAAGAAGATGAAGGTCGTGTTGGTAATAAGCCACGTAAGAGTAGTCATCATCATCA 1255
Query 1258 tcatcaACAAC--AA-CAAA---G-TAATCATC--C-CC---GGTC--GTCTCCATCTCC 1302
||| |||||| || || | | ||| | | || || | ||||||||| ||
Sbjct 1256 TCAACAACAAAGTAATCATCCCCGGTCGTCACCATCACCAATGGCCAAGTCTCCATCGCC 1315
Query 1303 GACAACCAAGTCTCCATCTCCCACGGCCAAGTCGCCGAGGAATTCAACG-GAAAATCACC 1361
||| |||||||| |||||||||||||||||||||||||||||||| | | ||||| ||||
Sbjct 1316 GACGACCAAGTCGCCATCTCCCACGGCCAAGTCGCCGAGGAATTCCA-GAGAAAACCACC 1374
Query 1362 GGAGAACGTTGAGAAATGGAGTGAATTCGCCGTTGAGAAGTGAGGCAGGTGGGGAACGGT 1421
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GGAGAACATTGAGAAATGGAGTGAATTCGCCGTTGAGAAGTGAGGCAGGTGGGGAACGGT 1434
Query 1422 ACTAAGTTTTTCTAGTCACACCAACT 1447
||| |||||| |||||| |||| |||
Sbjct 1435 ACTGAGTTTT-CTAGTCTCACCTACT 1459
> Ahg355547 jgi|Araly1|355547|fgenesh1_pg.C_scaffold_7002720
Length=1341
Score = 793 bits (429), Expect = 0.0
Identities = 834/1027 (81%), Gaps = 37/1027 (4%)
Strand=Plus/Plus
Query 176 TCGATACTTGATATGAGCAATCCAAGTTCCAAC-A-CTTTGTCAGAAGATCTATCGATTT 233
||||| || || || ||||||||||||||| || | |||| || |||||||| || || |
Sbjct 142 TCGATTCTAGACATAAGCAATCCAAGTTCC-ACTACCTTT-TCGGAAGATCTCTCAATCT 199
Query 234 CTTTGGCCGGATCAGATCTTCATGTGTTTACCCTAGCGGAGCTTAAAGTCATTACACAAA 293
|| | ||||| || ||||| ||||| || || | ||| |||||||||||||| |||||||
Sbjct 200 CTCTCGCCGGCTCCGATCTCCATGTATTCACACAAGCAGAGCTTAAAGTCATAACACAAA 259
Query 294 GCTTTTCATCGACCAATTTTCTAGGTGAAGGTGGGTTTGGTCCTGTTCA-TAAGGGTTTC 352
|||| || || | ||| ||||| |||||||| |||||||| || ||||| ||||||||
Sbjct 260 GCTTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGGCCGGTTCACAAAGGGTTT- 318
Query 353 ATTGATGATAAGCTACGTCCTGGTCTTAAAGCTCAGCCTGTTGCTGTTAAA-TTGCTTGA 411
||||| || | ||| |||||||||||||| ||||||||||| ||||||||| || || ||
Sbjct 319 ATTGACGACAGGCTCCGTCCTGGTCTTAAGGCTCAGCCTGTCGCTGTTAAACTT-CTCGA 377
Query 412 TCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATT 471
|||||| |||||||||||||||||||| ||| ||||||| || |||| ||||||| || |
Sbjct 378 TCTTGATGGTCTTCAAGGTCACCGTGAGTGGATGACGGAGGTCATGTGTTTGGGAAAACT 437
Query 472 GAAGCACAAAAATTTGGTGAAATTGATTGGTTATTGTTGTGAGGAAGAACATAGAAC-TC 530
|||||| ||| ||||||| |||| || ||||| || |||||||||||||| || ||
Sbjct 438 AAAGCACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAG-ACTTC 496
Query 531 TTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTG 590
|||||||||||||||||||||||||||| |||||| |||||| |||||||| | ||
Sbjct 497 TTGTTTATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAGGTGTTC-- 554
Query 591 CCT-C-GCTTCCATGGTCAACAAGAATGAAGATCGCTCATGGAGCTGCAACAGGA-CTTC 647
||| | ||| |||||| |||| || ||||||||||| | | |||||| | ||| || |
Sbjct 555 CCTACCGCTGCCATGGACAACTAGGTTGAAGATCGCTTACGAAGCTGCCA-AGGGTCTAC 613
Query 648 AATTTCTACACGAAGCTGAAAATCCTGTTATCTATCGGGATTTCAAAGCCTCCAATATCT 707
| ||||| || ||||| || || ||||| |||||||| |||||||| |||||||||||||
Sbjct 614 AGTTTCTCCATGAAGCCGAGAAGCCTGTCATCTATCGCGATTTCAAGGCCTCCAATATCT 673
Query 708 TGTTAGATTCCGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAG 767
|||||||||| ||||| || ||||||||||| ||||||||| |||| ||||||||||||
Sbjct 674 TGTTAGATTCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCAC 733
Query 768 AAGGAGACGACACTCATGTGTCAACTCGAGTGATGGGCACACAAGGCTACGCAGCTCCTG 827
|||| || || || |||||||| ||||| ||||||||||||||||| ||||| || || |
Sbjct 734 AAGGCGATGATACACATGTGTCCACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAG 793
Query 828 AATACATCATGACCGGTCATTTAACAGC-AAGAAGTGACGTATACAGCTTTGGAGTTGTG 886
| ||||| ||||| |||||| |||| || |||| |||| ||||||||||||||||| |||
Sbjct 794 AGTACATAATGACAGGTCATCTAACGGCTAAGA-GTGATGTATACAGCTTTGGAGTGGTG 852
Query 887 TTGCTAGAGCTTTTGACCGGACGGAGATCAGTAGACAAAAAGAGATCATCGAGGGAACAA 946
||||| ||||| ||||| || |||| ||| || |||| | |||||| || ||| || ||
Sbjct 853 TTGCTTGAGCTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCGTCAAGGAAAGAA 912
Query 947 AACCTTGTGGACTGGGCTCGTCCAATGCTCAATGACCCACGTAAACTATCTCGAATCATG 1006
| ||| || || |||||||||||||||||||| ||| ||||||||| |||| |||
Sbjct 913 ACCCTCGTTGAGTGGGCTCGTCCAATGCTCAACGACGTACGTAAACTCGGGAGAATAATG 972
Query 1007 GACCCGAGACTTGAAGGTCAGTACTCAGAGACAGGAGCAAGAAAAGCAGCAACAT-TGGC 1065
|||||||| ||||||| ||||||||||||||| |||||| |||| |||||||| | | ||
Sbjct 973 GACCCGAGGCTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAAC-TCTAGC 1031
Query 1066 TTACCAATGCTTAAGCCATCGACCCAAGAACC-GGCCATGT-ATGAGTGCCGTCGTCTCT 1123
||| |||||| |||| | ||||| |||| || ||||| | || || | || |||||
Sbjct 1032 TTATCAATGCCTAAGGTACCGACCAAAGA-CCAGGCCA-GACATCAGCACTGTTGTCTC- 1088
Query 1124 A-TACTC-AATGATCTT-AAAGACTATAA---TGATATTCCTAT-GGGG-ACTTTCACTT 1175
| | ||| || || | | ||||| || || ||||||||| || |||| | || |||||
Sbjct 1089 AGTTCTCCAA-GA-CATCAAAGATTACAAAGATGATATTCCCATTGGGGTA-TT-CACTT 1144
Query 1176 ACACGGT 1182
|||||||
Sbjct 1145 ACACGGT 1151
> Ahg481810 jgi|Araly1|481810|fgenesh2_kg.4__870__AT2G28930.1
Length=1564
Score = 119 bits (64), Expect = 8e-26
Identities = 432/602 (72%), Gaps = 56/602 (9%)
Strand=Plus/Plus
Query 393 TTGCTGTTAAATTGCTTGATCTTGAAGGTCT-TCAAGGTCACCGTGAATGGCTGACGGAA 451
||||||||||| |||| | | || ||| | |||||||||| ||||||||| |||||
Sbjct 529 TTGCTGTTAAAAAGCTTAACCAAGATGGT-TGGCAAGGTCACCAAGAATGGCTGGCGGAA 587
Query 452 GT-TATGTTTTTGGGACA-ATTGAAGCA-CAAAAAT-TTGGTGAAATTGATTGGTTATTG 507
|| || | ||||| || || | || | ||| || |||||| |||||||||||||
Sbjct 588 GTGAAT-TACTTGGGGCAGTTTTCA-CATC-CTAATCTT-GTGAAACTGATTGGTTATTG 643
Query 508 -TTGTGAGGAAGAACATAGAAC-TCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAG 565
|| ||||| || ||| | | |||||| ||||||||||||||||||||||||||||||
Sbjct 644 CTT-AGAGGATGAGCATCG-TCTTCTTGTGTATGAGTTCATGCCTCGTGGAAGCTTAGAG 701
Query 566 AATCAACTT-TTCAGAAGA--TACTC-TGC-CT-C-GCT-TCCATGG--TCAACAAGAAT 615
||||| || ||||||||| | || | | | | | || ||| || | | |
Sbjct 702 AATCAT-TTGTTCAGAAGAGGTTCTTATTTTCAACCGTTATCT-TGGACTCTCCG-GT-T 757
Query 616 GAA-GATCGCTCATGGAGCTGC-AACAGGACTT-CAATTTCTACACGAA-GCTGAAAATC 671
||| | | |||| ||| ||||| || ||| ||| | ||||| || || ||||| | |
Sbjct 758 GAAAGTT-GCTCTTGGTGCTGCCAA-AGGTCTTGCT-TTTCTTCAT-AACGCTGAGACTA 813
Query 672 CTGTTATCTATCGGGATTTCAAAGCCTCCAATAT-CTTGTTAGATTCCGATTACACGGCG 730
||| || || || ||||||||| | || ||||| ||| || ||||| || |||| ||
Sbjct 814 GTGTCATATACCGTGATTTCAAAACGTCGAATATACTTCTT-GATTCGGAGTACAATGCT 872
Query 731 AAACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGA-GACGACA-CTCATGTGT 788
| || ||||| |||||| | || ||||| || ||| | || || | | | ||||| |
Sbjct 873 ACGCTTTCTGATTTCGGGCTGGCTAAAGATGGTCCA-ACGGGCGATAAAAGC-CATGTCT 930
Query 789 CAACTCG-AGTGATGGGCACACAAGGCTACGCAGCTCCTGAATACATCATG-ACC-GGTC 845
| || || | | ||||| || | || || |||||||||||||| || || | | ||||
Sbjct 931 CTACACGGA-TCATGGGTACTTACGGATATGCAGCTCCTGAATA--TCTTGCAACTGGTC 987
Query 846 ATTTAACAGC-AAGAAGTGACGTATACAGCTTTGGAGTTGTG-TTGCTAGAGCTTTTGAC 903
|||||||| | || |||||| || || |||| || || ||| || | ||| | ||| |
Sbjct 988 ATTTAACAACCAA-AAGTGATGTCTATAGCTACGGTGTCGTGCTTT-TGGAGGTGTTGTC 1045
Query 904 CGGACGGAGATCAGTAGACAAAAAGAGATC-ATCGAGG-GAACAAAACCTTGTGGACTGG 961
||||||||| | || ||||| || | || | | ||| || ||||| || ||||| |||
Sbjct 1046 TGGACGGAGAGCTGTGGACAAGAACCG-TCCACC-AGGAGAGCAAAAGCTGGTGGAATGG 1103
Query 962 GC 963
||
Sbjct 1104 GC 1105
> Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1
Length=1584
Score = 97.1 bits (52), Expect = 4e-19
Identities = 149/193 (77%), Gaps = 17/193 (9%)
Strand=Plus/Plus
Query 393 TTGCTGTTAAATTG-CTTGATCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAA 451
||||||||||| | ||| | | ||| ||| ||||||||||||||||||||||||||||
Sbjct 471 TTGCTGTTAAA-CGACTTAACCCTGATGGTTTTCAAGGTCACCGTGAATGGCTGACGGA- 528
Query 452 GTT-ATGTTTTTGGGACAATTGAAG-CACAAAAATTTGGTGAAATTGATTGGTTATTG-T 508
| | | | ||||| || || ||| ||| |||||||| ||||||||||||||||| |
Sbjct 529 GATCAACTACTTGGGGCAGTT-AAGTCACCCGAATTTGGTTAAATTGATTGGTTATTGCT 587
Query 509 TGTGAGGAAGAACATA-GAACT-CTTGTTTATGAGTTCATGC-CTCGTGGAAG-CTTAGA 564
|| || || ||||| | | || || || |||||||| |||| | | || || ||| ||
Sbjct 588 TG-GAAGATGAACA-ACGG-CTTCTGGTGTATGAGTTTATGCACAAG-GGTAGTCTT-GA 642
Query 565 GAATCAACT-TTT 576
|||||| || |||
Sbjct 643 GAATCATCTGTTT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5