BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G05990.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930906 jgi|Araly1|930906|scaffold_303363.1 1962 0.0
> Ahg930906 jgi|Araly1|930906|scaffold_303363.1
Length=1215
Score = 1962 bits (1062), Expect = 0.0
Identities = 1165/1216 (96%), Gaps = 2/1216 (0%)
Strand=Plus/Plus
Query 135 AAATTAGAAAGGTTGTGAGAATGGCGGCTACAGCAGCTTCAAGCTTACAAATTGCTACAC 194
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAATTAGAAAGGTTGTGAGAATGGCGGCTACAGCAGCTTCAAGCTTGCAAATTGCTACAC 60
Query 195 GAAGGCCGAGCATGTCTTCGCCTAGCAAAATTCTTAAAGCAGGAACCTACATTGTTGGTG 254
||||||||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||||
Sbjct 61 GAAGGCCGAGCATTTCTTCGCCTTGCAAAGTTCTCAAAGCAGGGACCTACATTGTTGGTG 120
Query 255 CCAATCCTGGAAACGCTTCATGGGATAAACTTTCATGCACTCGCCAATTATCAAACCTTG 314
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 121 CCAATCCTGGAAACGCTTCATGGGATAAACTTTCATGCACTCGCCATTTATCGAACCTTG 180
Query 315 GATGTTTGAGAAACCACAGTGCTGTTCCAACTTGTAAG-AGACCCTTTTCTTTTTCCACA 373
|||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||
Sbjct 181 GATGTTTGAGAAACAACAGTGCTGTTCCAACTTCT-AGAAGACCCTTTTCTTTTTCCACA 239
Query 374 AGGGCAATGTCTGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGA 433
| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AAGGCGATGTCTGAGTCCAGTGAAAATAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGA 299
Query 434 GGGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGCTATGGTTGGGCCATAGCA 493
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GGGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGATATGGTTGGGCCATAGCA 359
Query 494 AAATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTGCACTTAAT 553
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 AAATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACATGGGTTCCTGCACTTAAT 419
Query 554 ATATTTGAGACAAGCTTGAGACGTGGAAAATTCGACCAGTCACGAGTGTTGCCTGACGGG 613
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 420 ATTTTTGAGACAAGCTTGAGACGTGGAAAATTTGACCAGTCACGAGTTTTGCCGGACGGG 479
Query 614 TCATTGATGGAGATTAAGAAGGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGAT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCATTGATGGAGATTAAGAAGGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGAT 539
Query 674 GTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG 733
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 GTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCATCAAACTGGACCGTACAG 599
Query 734 GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCCATTCCCTT 793
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 GAAGCTGCTGAGTGTGTGAAAAAAGATTTTGGAAGCATCGACATTCTTGTCCATTCCCTT 659
Query 794 GCAAATGGCCCAGAGGTTAGCAAACCTCTTCTGGAGACATCAAGGAAAGGCTATCTCGCT 853
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 GCAAATGGGCCAGAGGTTAGCAAACCTCTTCTGGAGACATCGAGGAAAGGCTATCTCGCT 719
Query 854 GCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTGAGGCATTTTCTGCCAATTATG 913
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTCAGGCATTTTCTGCCAATTATG 779
Query 914 AACCCAGGAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGG 973
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 AACCCAGGAGGTGCTTCGATATCTCTTACTTACATTGCCTCTGAAAGGATCATTCCTGGG 839
Query 974 TATGGTGGAGGTATGAGTTCTGCCAAAGCTGCACTAGAGAGTGACACACGGGTGCTTGCA 1033
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 840 TATGGTGGAGGTATGAGTTCTGCCAAAGCTGCACTAGAGAGTGATACAAGGGTGCTTGCA 899
Query 1034 TATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGGTCCTTTGGGA 1093
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 TATGAAGCCGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCTGGTCCTTTGGGA 959
Query 1094 AGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAAT 1153
||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 960 AGCCGAGCAGCGAAAGCAATCGGGTTCATTGACACCATGATTGAGTATTCCTACAATAAT 1019
Query 1154 GGGCCTATTCAGAAAACACTGACCGCAGATGAAGTTGGGAATGCAGCAGCCTTCTTGGCA 1213
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGGCCTATTCAGAAAACATTGACCGCAGATGAAGTTGGGAATGCAGCAGCCTTCTTGGCA 1079
Query 1214 TCTCCATTGGCCTCTGCCATAACCGGTGCAACCATATATGTGGACAATGGTTTGAATGCA 1273
|| ||| |||||||||| || |||||||| ||||| |||||||||||||| |||||||||
Sbjct 1080 TCGCCACTGGCCTCTGCTATTACCGGTGCTACCATCTATGTGGACAATGGCTTGAATGCA 1139
Query 1274 ATGGGCGTTGCACTGGACAGCCCGGTGTTCAAAGACCTTAACAGCAAGAATTAGAGTCTT 1333
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1140 ATGGGCGTTGCACTAGACAGCCCGGTGTTCAAAGACCTCAACAGCAAGAATTAGGGTCTT 1199
Query 1334 GATCGACGACTGGACT 1349
||||| |||||| |||
Sbjct 1200 GATCGGCGACTGAACT 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5