BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06000.1
Length=2057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930907 jgi|Araly1|930907|scaffold_303364.1 2444 0.0
> Ahg930907 jgi|Araly1|930907|scaffold_303364.1
Length=1656
Score = 2444 bits (1323), Expect = 0.0
Identities = 1550/1661 (93%), Gaps = 10/1661 (1%)
Strand=Plus/Plus
Query 57 CCGCCGCCGATATTCTCACGCCGGTATGATTCGAACAACATTCGCGACCGCCATCGCTCA 116
||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1 CCGCCGCCGATTTTCTCACGCCGTTATGATTCGAACAACATTCGCCACCGCCATCGCTCA 60
Query 117 TTTCCACACGCATTCTCATGGAGGAGCTCAAGCTCGTCCTCTACAGAACAACACACGAGA 176
||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 61 TTTCCACACCCATTCTCATGGAGGAGCTCAAGCTCGTCCTATACAGAACAATACGCGAGA 120
Query 177 AGTAATCCATTGTCCTGAAGCTTGGTTAGTCAAAATCGTATCTACTTTGTTCGTGTACAG 236
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 AAAAATCCATTGTCCTGAAGCTTGGTTAGTCAAAATCGTATCTACTTTGTTCGTCTACAG 180
Query 237 AGTTCCAGATTCAGATCTCTGTTTCTGTTACTTAAGCAAGAATCTAAATCCGTTTATCTC 296
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGTTCCAGATTCAGATCTCTGTTTCTGTTACTTAAGCAAGAATCTGAATCCGTTTATCTC 240
Query 297 CTTTGAGGTTGTGAAGAAATTGGATAACAATCCTCACATAGGGTTTCGATTTTGGGAGTT 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 CTTTGAGGTTGTGAAGAAATTGGATAATAATCCTCACATAGGGTTTCGATTTTGGGAGTT 300
Query 357 TAGTAGATTCAAATTGAACATTCGTCATTCGTTTTGGACTTATAATTTGCTAACGAGATC 416
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 TAGTAGATTCAAATTGAATATTCGTCATTCGTTTTGGACTTATAATTTGCTTACGAGATC 360
Query 417 TCTTTGTAAAGCCGGTTTGCACGATTTAGCCGGTCAGATGTTTGAGTGTATGAAGAGCGA 476
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GCTTTGTAAAGCCGGTATGCACGATTTAGCGGGTCAGATGTTTGAGTGTATGAAGAGCGA 420
Query 477 TGGGGTTTCTCCGAATAATCGGTTATTAGGGTTCTTAGTGTCTTCGTTTGCTGAGAAA-G 535
|||| |||||||||||| ||||||||||||||| || |||||||| |||||||| ||| |
Sbjct 421 TGGGATTTCTCCGAATAGTCGGTTATTAGGGTTTTTGGTGTCTTCATTTGCTGA-AAAGG 479
Query 536 GTAAGCTCCATT-TCGCTACTGCGTTGCTTCTTCAGTCTTTTGAGGTTGAAGGATGTTGT 594
||||||| |||| | |||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 480 GTAAGCTACATTGT-GCTACTGCATTGCTTCTACAGTCTTATGAGGTTGAAGGATGTTGT 538
Query 595 ATGGTGGTGAATAGTTTGTTGAATACTTTGGTGAAGTTGGATCGTGTGGAAGATGCGATG 654
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 539 ATGGTGGTGAATAGTTTGTTGAATACGTTAGTGAAGTTGGATCGTGTGGAAGATGCGATG 598
Query 655 AAGCTTTTTGATGAACATTTGAGATTTCAGTCTTGTAATGATACAAAGACGTTTAACATT 714
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 599 AAGCTTTTTGAGGAACATTTGAGATTTCAGTCTTGTAATGATACTAAGACCTTTAACATT 658
Query 715 TTGATTCGAGGTTTGTGCGGCGTAGGG-AAAGCGGAGAAAGCGTTAGAGCTTTTGGGTGT 773
||||||||||||||||| || || ||| ||||| ||||||||| |||||||||||||||
Sbjct 659 TTGATTCGAGGTTTGTGTGGTGT-GGGAAAAGCAGAGAAAGCGGTAGAGCTTTTGGGTGG 717
Query 774 GATGAGTGGTTTTGGTTG-TGAGCCTGACATTGTTACGTATAATACTCTTATTCAGGGGT 832
|||||||||||||||||| | | ||||||||| |||||||||||||||||||| ||||||
Sbjct 718 GATGAGTGGTTTTGGTTGTTTA-CCTGACATTATTACGTATAATACTCTTATTAAGGGGT 776
Query 833 TTTGCAAGAGTAATGAGTTGAACAAAGCGAGTGAGATGTTTAAAGATGTTAAGTCGGGTA 892
||||||||||||||||| | || ||||| | |||||||||| | |||||||||||| | |
Sbjct 777 TTTGCAAGAGTAATGAGCTAAAGAAAGCAAATGAGATGTTTGACGATGTTAAGTCGAGCA 836
Query 893 GTGTTTGCTCTCCTGATGTTGTTACATATACTTCGATGATCTCAGGGTACTGCAAAGCTG 952
|||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 837 GTGTTTGCTCACCCGATGTTGTTACGTATACGTCGATGATCTCAGGGTACTGCAAAGCTG 896
Query 953 GGAAGATGCGTGAAGCGTCGAG-TTTGTTAGATGATATGCTTCGTTTGGGGATATATCCA 1011
| ||||||| ||||| ||| | |||||||||||| |||||||||||||| ||||| |||
Sbjct 897 GAAAGATGCAAGAAGCATCG-GTTTTGTTAGATGACATGCTTCGTTTGGGAATATACCCA 955
Query 1012 ACTAATGTGACTTTTAATGTCCTCGTTGATGGTTATGCGAAAGCTGGTGAGATGCTTACT 1071
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 956 ACCAATGTGACTTTTAATGTTCTCGTGGATGGTTATGCGAAAGCTGGTGAGATGCATACT 1015
Query 1072 GCTGAAGAAATTCGTGGGAAAATGATTTCTTTTGGCTGTTTCCCGGATGTAGTGACGTTT 1131
|||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||
Sbjct 1016 GCTGAAGAAATTCGTGGGAAAATGATTTCTTTTGGCTGTTTCCCAGACATTGTGACCTTC 1075
Query 1132 ACTTCCTTAATTGATGGATATTGTAGAGTAGGACAAGTGAGCCAAGGTTTTAGGCTTTGG 1191
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||
Sbjct 1076 ACTTCCTTAATTGATGGATACTGTAGAGTAGGACAAGTGAACCAAGGGTTTAGACTTTGG 1135
Query 1192 GAAGAAATGAATGCCAGAGGAATGTTTCCTAATGCATTTACCTATTCTATTCTTATCAAT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAAGAAATGAATGCCAGAGGAATGTTTCCTAATGCATTTACCTATTCTATTCTTATCAAT 1195
Query 1252 GCGCTCTGTAACGAGAATAGGCTGCTCAAGGCTCGTGAACTTCTGGGGCAGTTAGCTAGT 1311
|| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1196 GCACTCTGTAAAGAGAATAGGCTTCTCAAGGCTCGTGAACTTTTGGGGCAGTTAGCTAGT 1255
Query 1312 AAGGACATTATTCCACAACCATTTATGTACAACCCTGTCATTGATGGGTTTTGTAAAGCT 1371
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1256 AAGGACATTATTCCACAACCATTTATGTACAACCCTGTAATTGATGGGTTTTGTAAAGCT 1315
Query 1372 GGAAAGGTCAATGAGGCAAATGTTATTGTGGAAGAGATGGAGAAGAAGAAATGCAAACCA 1431
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1316 GGAAAGGTCAGTGAGGCAAATGTTATCGTGGAAGAGATGGAGAAGAAGAAATGCAAACCA 1375
Query 1432 GATAAGATCACATTTACGATTCTTATAATCGGGCATTGCATGAAAGGAAGGATGTTTGAA 1491
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1376 GATAAGATCACATTTACGATTCTTATAATTGGACATTGCATGAAAGGAAGGATGTTTGAA 1435
Query 1492 GCAGTTAGCATTTTCCACAAAATGGTTGCGATAGGTTGTTCACCGGATAAGATTACTGTG 1551
||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 1436 GCAGTCAGCATTTTCCACAAAATGGTGGCAATAGGTTGTTCACCAGATAAAATTACAGTG 1495
Query 1552 AGTTCTTTGTTATCTTGTCTTCTTAAGGCTGGTATGGCTAAGGAGGCCTATCACTTAAAC 1611
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1496 AGTTCTTTGTTATCTTGTCTTCTTAAGGCCGGTATGGCTAAGGAGGCCTATCACCTAAAC 1555
Query 1612 CAGATAGCACGTAAAGGCCAAAGTAATAACGTGGTACCTCTAGAGACGAAAACCGCAAAT 1671
|||||||||| ||||||||||| |||| | | || |||||||||||||||||| ||||||
Sbjct 1556 CAGATAGCACATAAAGGCCAAATTAATGATGGGGCACCTCTAGAGACGAAAACAGCAAAT 1615
Query 1672 GCGACTCTGGCTGCCTGCTAGGCTTTCTATATAATATATCT 1712
| ||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1616 GTGACTCTGGCTGCCTGCTAGACTTTCGATATAATATCTCT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77361287595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5