BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06005.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319341 jgi|Araly1|319341|fgenesh1_pm.C_scaffold_3002357 1729 0.0
> Ahg319341 jgi|Araly1|319341|fgenesh1_pm.C_scaffold_3002357
Length=1068
Score = 1729 bits (936), Expect = 0.0
Identities = 1026/1070 (96%), Gaps = 4/1070 (0%)
Strand=Plus/Plus
Query 37 ATGTCAACGGAGAGACGTGCTTCGTCGAATCCAATGACCAACGAAGAGAACGCTATGTTC 96
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCAACGGAGAGACGTTCTTCGTCAAATCCGATGACCAACGAAGAGAACGCTATGTTC 60
Query 97 CTTGATATATTGCATGAAGCACCATTATTTGGTCACAGGAAATCTAGAAGCCTTGTTGGA 156
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CTTGACATATTGCATGAAGCACCATTATTTGGTCACAGGAAATCTAGAAGTCTTGTTGGA 120
Query 157 AGTTACCTCTATATGC-TTCTATTGGCAGGTTATGCTATTTTAGCTGCTGGTGCTCCTTG 215
|||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 121 AGTTACCTCTATAT-CGTTCTATTGGCAGGTTATGCTATTTTAGCTGCAGGAGCTCCTTG 179
Query 216 GATGTTTCACCGAGTCCAACAGTTGACCCCTTCATTGCTCTGCTGCTGCGATGTTGCGCT 275
||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 180 GATATTTCACCGAGTCGAACAGTTGACTCCTTCGTTGCTCTGCTGCTGCGATGTTGCGCT 239
Query 276 TTTGGTTGTCACAGGTGTCTTTCAACAATACTTTGTTTATCAAGTCCAGAAAATACGTCT 335
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGGTTGTCACAGGTATCTTTCAACAATACTTTGTTTATCAAGTCCAGAAAATACGTCT 299
Query 336 CCAGGGTTATTACAGTTTCAGTCAAAAGTTGAAGCATGTTGTTCGTCTGCCATTTGCAAT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCAGGGTTATTACAGTTTCAGTCAAAAGTTGAAGCATGTTGTTCGTCTGCCATTTGCAAT 359
Query 396 CGCTGCATATGGGACTGCTGCAATGCTTCTTGTGATAGTGTGGAGGCCTCAAATCCACAT 455
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGCTGCATATGGAACCGCTGCAATGCTTCTTGTGATAGTGTGGAGGCCTCAAATCCACAT 419
Query 456 TCTTTCTATTTCTTCTTTGCAACGGATCATCATGTTGGTTGAAGCAGTGGGCGCTGGCTT 515
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 ACTTTCTATTTCTTCTTTACAACGGATCATCATGTTGGTTGAAGCAGTGTGCGCTGGCTT 479
Query 516 TTTCATGGGTTTATACATCGGTTATGTGCACCAATACAATTCCGTGAATTCCCGGCCAGA 575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TTTCATGGGTTTATACATCGGTTATGTGCACCAATACAATTCCGTTAATTCCCGGCCAGA 539
Query 576 TGTCTTGAAGTCATTATATTCTCCTCTTCAGCCGTCAAGTTCTATGGAAGGTTTGAGGTA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTCTTGAAGTCATTATATTCTCCTCTTCAGCCGTCAAGTTCTATGGAAGGTTTGAGGTA 599
Query 636 TTATGAAGGCCGGCTTTCTGATCAACAAACGGCTTTGTTACAATATCAACGCGAAAATCT 695
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 600 TTATGAAGGCCGGCTTTCTGATCAGCAAACGGCTTTGTTACAATATCAACGTGAAAATCT 659
Query 696 CCATTTTCTAAGCGAGGAGATTCTGTGCTTGCAAGAGAAACTTAGCAAATATGAACAATC 755
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 CCATTTTCTAAGCGAGGAGATTCTGTCCTTGCAAGAGAAACTTAGCAAATATGAACAATC 719
Query 756 TGATGATGGAAGCACACCTCAGGTTGATCTCGCACATCTTTTAGCTGCTCGAGATCAAGA 815
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGATGATGGAAGCACACCTCAAGTTGATCTCGCACATCTTTTAGCTGCTCGAGATCAAGA 779
Query 816 GCTGAGGACACTTTCAGCTGAGATGAATCAGCTTCAGTCTGAGCTACGGCTTGCTCGTTC 875
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCTAAGGACACTTTCAGCTGAGATGAATCAGCTTCAGTCTGAGCTACGGCTTGCTCGTTC 839
Query 876 TTTAATAGCCGAGAGAGATGCAGAGGTGCAGCGTGTCAACAGTACCAACAACCAGTATAT 935
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TTTGATAGCCAAGAGAGATGCAGAGGTGCAGCGTGTCAACAGTACCAACAATCAGTATAT 899
Query 936 CGAAGAAAACGAAAGACTGAGG-GCAATTTTGAGTGAATGGAGCATGCGGGCAGCGAATC 994
|||||||| ||||| || | | ||||| ||||| |||||||||||||||||||| ||||
Sbjct 900 TGAAGAAAATGAAAGGCT-ACGTGCAATCTTGAGCGAATGGAGCATGCGGGCAGCAAATC 958
Query 995 TTGAGAGAGCTTTGGAAGTGGAACGGATGTCGAACTCAGAACTACAGAAGGAAGTAGCAA 1054
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
Sbjct 959 TTGAGAGAGCTTTGGAAGTAGAGCGGATGTCGAACTCAGAACTACAGAAAGAAGTAGCCA 1018
Query 1055 GCACGCGTAGAAAGCAGATGCTTGAGACAACAACGTCTGAGCAACCTTAA 1104
|| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GCGGGCGTAGAAAGCAGATGCTTGAGACAACAACATCTGAGCAACCTTAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5