BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06010.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480210 jgi|Araly1|480210|fgenesh2_kg.3__2911__AT2G06010.1 1301 0.0
> Ahg480210 jgi|Araly1|480210|fgenesh2_kg.3__2911__AT2G06010.1
Length=987
Score = 1301 bits (704), Expect = 0.0
Identities = 822/877 (94%), Gaps = 16/877 (2%)
Strand=Plus/Plus
Query 1 GGGAT-AAGTTTGAGCGGTGGATTTTGTATGGAGCCGCCGAGTTCGAGACCGGAGGAACC 59
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GGGATAAAG-TTGAGCGGTGGATTTTGTATGGAGCCGCCGAGTTCGAGAGCGGAGGAACC 59
Query 60 TCCGTCATGGGAGGACCTTTACAAAATCAATCTTATGCCATCGGAGCTATTCCTTAAGTT 119
||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||
Sbjct 60 TCCGTCATGGGAGGACCTTTACAAAATCAATCTAATGCCGTCGGAGCTATTCGTCAAGTT 119
Query 120 CCGCAAAGAGCTTCAAGGCCTTCGCGTCGGCGTCAATCTCGAGTTATATAACGAACCCAC 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 120 CCGCAAAGAGCTTCAAGGCCTTCGTGTCGGCGTCAATCTTGAGTTATATAATGAACCCAC 179
Query 180 GAATGATTACCACGCAAAGCTTGTTTTGAAGCCTCTATGTCCAGAAAGGAAGTGGAAGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAATGATTACCACGCAAAGCTTGTTTTGAAGCCTCTATGTCCAGAAAGGAAGTGGAAGTT 239
Query 240 TATATATGAGCCGCTACACCAAGAAGTTCGTGTTTTATCGAAGAAGATTCCTGTCACCAG 299
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 240 TATATATGAGCCGCTACACCAAGAAGTTCGTGTCCAATCAAAGAAGATTCCTGTCACCAG 299
Query 300 ATTTCTAAACCTCCAGGTTGGTGTTGGACATAACTTTCAAATGAATGCAATTGGTTGGAA 359
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 300 ATTTCTAAACCTCCAGGTTGGTATAGGACATAATTTTCAAATGAATGCAATTGGTTGGAA 359
Query 360 ATGGAAGCTTACTTCATGTTTGGGTGGAGATGGTGTGTCTCGGATTCGAAATAAAACTAC 419
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 360 ATGGAAGCTTACTTCATGTTTGGGTGGAGATGGTGTATCTCGGATTCGAAACAAAACTAC 419
Query 420 TCTTGGTCTTAGTCCTGGTATCGATTTCCGGTTTGGATGGAGAGCTGATTTTGTACTCCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TCTTGGTCTTAGTCCTGGTATCGATTTCCGGTTTGGATGGAGAGCTGATTTTGTACTTCC 479
Query 480 AGAGGTTACTGGGGCCCTTGGTACTGAGGAACCGTTATTCAACATGAGCTCCGGGCGTTT 539
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 480 AGAGGTTACTGGGGCCCTTGGGACAGAGGAACCGTTATTCAACATGAGCTCCGGGCGTTT 539
Query 540 AGAGGCATCACTAGACAGAGTAGAGGCCATTGTAACCCATTCAGATTATCTATAGCCAAT 599
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 AGAGGCATCACTGGACAGAGTAGAGGCCATTATAACCCATTCAGATTATCTATAGCCAAT 599
Query 600 CCGTAC--------CTTTCGTGTGCAAACGAGGACGAGATCTTG-CATTATCAGAAGGCA 650
||||| |||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 600 CCGTAAGTGTAGATCTTTCGTGCGCAAACGAGGACGAGATCTTGACAATATCAGAAGGCA 659
Query 651 AACATGTGAAAGCACAAGCACTTTGGTGTTCACAACCAAAACATAAGAATGTCCATAAGA 710
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 660 AACATGTGAAAGCACAAGCACTTTGGTGTTCACAACCAAAACCTAAGAATATCCATAAGA 719
Query 711 TTTTGCTTCAGAGAGATATGCTGAAAGCACAAGCACTAGTGGGTAGTTTCATCAGT-TAT 769
|||||||| ||||| ||||||||||||||||||||| |||||||||||| | || | |
Sbjct 720 TTTTGCTTTAGAGA--TATGCTGAAAGCACAAGCACTTGTGGGTAGTTTCGT--GTCTGT 775
Query 770 TATACTATCTGGTAATCACTAGTTTGATGGACGTTCATACAATGCATCTAAAGAAATGTA 829
||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 776 TATACGATTTGGTAATCACTAGTTTGATGGACGTTCATGCAATGGATCTAAAGAAATGTA 835
Query 830 TAATCGTTGGATCGTTGATACAAGTTAGGTTAGATAA 866
||||||||||||| |||||| ||||||||| | ||||
Sbjct 836 TAATCGTTGGATCTTTGATAAAAGTTAGGTAAAATAA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5