BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06020.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319343 jgi|Araly1|319343|fgenesh1_pm.C_scaffold_3002359 601 3e-171
Ahg930918 jgi|Araly1|930918|scaffold_303375.1 387 1e-106
> Ahg319343 jgi|Araly1|319343|fgenesh1_pm.C_scaffold_3002359
Length=939
Score = 601 bits (325), Expect = 3e-171
Identities = 438/488 (90%), Gaps = 26/488 (5%)
Strand=Plus/Plus
Query 1 ATGAAGAAGCAAGAAAAAGGAAACGAAGTTGTCACTTTCGAAGAAAATCCTAGCACTTAT 60
||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 1 ATGAAGAAGAAAGAAAAAGGAAAAGAAATTGTCACTTTCGAAGAAAATCCTAGCACTTCT 60
Query 61 GTT---CATC---ATC------A-C--ACGAAAAAA-GCCTCAATGGTTTTAAGTGAGCA 104
|| |||| ||| | | || |||||| | ||||||| |||||||||||||
Sbjct 61 ATTCACCATCTTGATCATTTTGATCATAC-AAAAAAGGTCTCAATGCTTTTAAGTGAGCA 119
Query 105 AGAAATAGAGGTTATTCT------A-C-A-AAGTAATAAGGAGACATATAATGAAAAATT 155
|||||||||||| ||||| | | | ||||||||||||||||||||| ||||| ||
Sbjct 120 AGAAATAGAGGTAATTCTACAAAAATCTACAAGTAATAAGGAGACATATAAAGAAAATTT 179
Query 156 AGaaaaaaaTACGAAAGAGAATGCTGAGAAAGTTGGTATTGAAGAAGGAAATGGTTCATC 215
| ||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 ACAAAAATCTAAGAAAGACAATGCTCAGAAAGTTGGTATTGAAGAAGGAAATGGTTCATC 239
Query 216 TTCAAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGAGGTGGTC 275
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 TTCAAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGCGGTGGTC 299
Query 276 AAGCGACCTTCACGATTGCTTTGTTAATGCTGTGGAAAAACTTGGTGGACCTAACAAAGC 335
||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 300 AAGAGACCTTCACGATTGCTTTGTTACTGCTGTGGAAAAACTTGGTGGACCTGACAAAGC 359
Query 336 GACGCCAAAAAGTGTTAAAGAGGCAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAA 395
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 AACGCCAAAAAGTGTTAAAGAGACAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAA 419
Query 396 GAGTCATCTTCAGAAATTTAGACTTGGAAAGTGTAACATACGGGGTGGAACAAATCAATA 455
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GAGTCATCTTCAGAAATTTAGACTTGGAAAGTGTAACATACGGGATGGAACAAATCAATA 479
Query 456 TGTTAGAC 463
| ||||||
Sbjct 480 TATTAGAC 487
> Ahg930918 jgi|Araly1|930918|scaffold_303375.1
Length=1223
Score = 387 bits (209), Expect = 1e-106
Identities = 359/427 (84%), Gaps = 28/427 (7%)
Strand=Plus/Plus
Query 489 TCAACAACAACTTCAGCTCAACAATGA-TTGTGTCAATCATGACTCATATTGCAATGCAA 547
|||||||||||||||| | |||||| | |||||||| ||||||||||||| ||||||||
Sbjct 816 TCAACAACAACTTCAGGTAAACAAT-AGTTGTGTCATTCATGACTCATATCACAATGCAA 874
Query 548 CTTTTTTATCGGTC-ACGGTACCACCAACAATTGATTCTCTTCATCAGGACACTTTAAAC 606
|||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 875 CTTTTTCATCGG-CTACGGTACCACCAACAATTAATTCTCTTCATCAGGACACTTTAAAC 933
Query 607 AATACAATTCTTTT-TCCAACGACACTACAAGCAATACCGA-CATCTGTGTCACACAATA 664
||||||||| |||| | |||| |||| |||| ||||| | | ||||||| || ||| |
Sbjct 934 AATACAATTGTTTTGT-CAACAACACCACAATCAATA-CAAGCATCTGT-TC-CAC---A 986
Query 665 CGTACATGAGTTCATATCCTTCATACAATACTGTTGAAGTTGTTAAAGCTCAGCTCAATG 724
| | || || |||||| ||||||||||| ||||||| || ||||| ||||||||||
Sbjct 987 C--A-ATCAG----TATCCTCCATACAATACTCTTGAAGTGGTGAAAGCACAGCTCAATG 1039
Query 725 CATTACAAGATTCAAGCACTAGCCAAACACAAGAAACATTTTCTCGTGAAACCAACTTAT 784
||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||
Sbjct 1040 CATTACAAGATTCAAGCACTAACCAAACTCAAGAAACACTTTCTCGTGGAACCACCTTAT 1099
Query 785 CGTCTA-TAGTCACAAGGGATGAAGCAGATCCAGTGGATAAGTATATTGATTGGAACAAA 843
||||| | |||||||| ||||| | || |||||||||| ||||||||||||| | |||
Sbjct 1100 CGTCTTCT-GTCACAAGAGATGAGGTTGACCCAGTGGATACGTATATTGATTGGGATAAA 1158
Query 844 GTTGGA-GAAACTGATATTGAACATGAT-TCAGTCGAAGTCCTT-GAGGCTTTAGGTTT- 899
||| | |||| |||||||||| |||| | ||| ||| | ||| ||||||||||||||
Sbjct 1159 GTTA-ACGAAAGGGATATTGAACTTGATCT-AGTTGAAATTCTTTGAGGCTTTAGGTTTT 1216
Query 900 GAAGTAA 906
| |||||
Sbjct 1217 GGAGTAA 1223
Score = 316 bits (171), Expect = 1e-85
Identities = 185/192 (96%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 219 AAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGAGGTGGTCAAG 278
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 114 AAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGCGGTGGTCAAG 173
Query 279 CGACCTTCACGATTGCTTTGTTAATGCTGTGGAAAAACTTGGTGGACCTAACAAAGCGAC 338
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 174 AGACCTTCACGATTGCTTTGTTACTGCTGTGGAAAAACTTGGTGGACCTGACAAAGCAAC 233
Query 339 GCCAAAAAGTGTTAAAGAGGCAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAAGAG 398
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GCCAAAAAGTGTTAAAGAGACAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAAGAG 293
Query 399 TCATCTTCAGAA 410
|||||||||||
Sbjct 294 CCATCTTCAGAA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5