BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06025.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480213 jgi|Araly1|480213|fgenesh2_kg.3__2914__AT2G06025.1 1626 0.0
> Ahg480213 jgi|Araly1|480213|fgenesh2_kg.3__2914__AT2G06025.1
Length=1090
Score = 1626 bits (880), Expect = 0.0
Identities = 1038/1111 (93%), Gaps = 24/1111 (2%)
Strand=Plus/Plus
Query 277 GTCAAACTTTGCTTTCTGGTACGGCGGCGATGTCGACGATTTCGATCCATCGGACTGAGA 336
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTCAAAAGTTGCTTTCTGTTACGGCGGCGATGTCGACGATTTCGATCCATCGGACTGA-A 59
Query 337 CT-CTACGAATCACTCACGCTCGGTCACGAATCTT-CCGGCAGAGATATCGGAGAACTAT 394
|| ||||||||||| ||| |||||| ||||| || ||||||||||| ||||||||||||
Sbjct 60 CTGCTACGAATCACGCACAATCGGTCTCGAAT-TTCCCGGCAGAGATTTCGGAGAACTAT 118
Query 395 CCCTCTTTGGAAATTAACAATCAATTCGAGATCTTCTGATACATCTAAGAAGGAAGAACT 454
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCCTCTTTGGAAATTAACGATCAATTCGAGATCTTCTGATACATCTAAGAAGGAAGAACT 178
Query 455 CTCTGTACAA-ATATCAATTCCTCCTCAAGTTGATCAATCAAGACCTGAAGGTTTGAGAT 513
|||||| || |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 179 CTCTGT-GAAGATATCAATTCCTCCTCAAGTTGATCAATTAAAACCTGAAGGTTTGAGAT 237
Query 514 TCGATCGTTTACAACCTCCGGAGCCAGAGTTTGGTCATGAAGATAGATTTGAGTTTGGTA 573
|||||||||| || ||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 238 TCGATCGTTTGCAGCCTCCTGAGCCAGACTTTGGTCATGAAGATAGATTGGAATTTGGTA 297
Query 574 AATTCGTAGCTAGAGAAGCTATGCTTGATGAAGAATATTGGACTGCAGCTTGGCTTCGTG 633
|||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 298 AATTCGTAGCAAGAGAAGCTATGGTTGACGAAGAATATTGGACTGCAGCTTGGCTTCGTG 357
Query 634 CAGAGAGTCACTGGGAAGATCGCTCCAATGAAAGATATGTTGATAACTACAAAAGGAAAT 693
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 CAGAGAGTCATTGGGAAGATCGTTCCAATGAAAGATATGTTGATAACTACAAAAGGAAAT 417
Query 694 TTGCAGAGCAGGAGTTTAATGCTATTAAAAGAAGATGTAAAGGGATGCAAGGACAGAAAT 753
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 418 TTGCAGAGCAGGAGTTTAATGCCATAAAAAGAAGATGTAAAGGGATGCAAGGACAGAAAT 477
Query 754 GCTCATGTATCGTTGCGGTAAAGAAGGAAGAGAAGCATATTAAACGTTCAGTAATCAAAA 813
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 GCTCCTGTATCGTTGCGGTAAAGAAGGAAGAGAAGCACATTAAACGTTCAGTAATCAAAA 537
Query 814 GTGTGGTTGGGACGCTTGATTTGAGTATTCGGTATTTTTTGCAGGGAGAGACCTTTCCTG 873
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 538 GTGTGGTTGGGACGCTTGATTTGAGTATTCGGTATTTCTTGCAGGGAGAGACCTTTCCTG 597
Query 874 GGGAAAAGGTGAAGTCTCAATTGTTCTGCAGCATAAACCAGGAAGGATCAAATAGGTATG 933
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 GGGAAAAGGTTAAGTCTCAATTGTTCTGCAGCATAAACCGGGAAGGATCAAATAGGTATG 657
Query 934 GTTATATTGCTAATCTATGTGTTGCGAAATCAGCACGCCGCCAGGGTATTGCTTGCAACA 993
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 658 GTTATATTGCTAATCTATGTGTTGCGAAATCAGCTCGTCGCCAGGGCATTGCTTGCAATA 717
Query 994 TGTTACGTTTCGCTGTCGAATCAGCCAGACTGAGTGGAGTTGAACAAGTATATGTTCATG 1053
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 TGTTACGTTTCGCTGTCGAATCAGCCAGATTGAGTGGAGTTGAACAAGTATATGTTCATG 777
Query 1054 TACATAAAAACAATTCAGTTGCTCAGGAATTATACCAGAAGACCGGTTTTAAGATTGTTG 1113
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 778 TACATAAAAACAATTCAGTTGCTCAAGAATTATATCAGAAGACCGGTTTCAAGATCGTTG 837
Query 1114 AAACAGGTAAATTTGAATCATTAGATGATGATACATACTTGCTCCAGTACACAAGCTAAC 1173
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 838 AAACGGGTAAATTTGAATCATTAGATGATGATACATACTTGCTCCAGTACACAAGATAAC 897
Query 1174 ACACACGAAAGCGATCTTGGTTCTCTCTGCCCTTTCTTGATTGTTTTTGTTTTGGAGAAT 1233
||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ACACAAGAAAACGATCTTTGTTCTCTCTGCCCTTTCTTGATTGTTTTTGTTTTGGAGAAT 957
Query 1234 GGGAGAGAAGAATCTCGTGGCTCACTTGTTAATGCATTTGTTTGTCATGTAAAGTATAGT 1293
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 958 GGGAGAGAAGAATCTCGTGGCTCACTTGTTAAT---TT-GTTTGTCATGTAAAGTATAGT 1013
Query 1294 GTGAAAtgtgtgtgtgtgGGGGGATTAAGTCCAAGTTTCATGTACAATTGTGTGTGCTTT 1353
|| |||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 1014 C--AA--GTGTGT----------ATTAAGTCCAACTTTCATGTACAATTGTGTGTGCGTT 1059
Query 1354 GTGAAGAAGTATATATTTGGCTTTGGATTCA 1384
||| |||||| ||||||||||||||||||||
Sbjct 1060 GTGGAGAAGTGTATATTTGGCTTTGGATTCA 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5