BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06040.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319345 jgi|Araly1|319345|fgenesh1_pm.C_scaffold_3002361 2739 0.0
> Ahg319345 jgi|Araly1|319345|fgenesh1_pm.C_scaffold_3002361
Length=2322
Score = 2739 bits (1483), Expect = 0.0
Identities = 2076/2344 (89%), Gaps = 113/2344 (5%)
Strand=Plus/Plus
Query 141 ATGACGATTCTTCGATCTCGCGAAATCCCATCTGTCTCACCCAAGCCACTCCCTAAAGAA 200
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 1 ATGACGATTCTTCGATCTCGCGAAATCCCATCGGTCTCAGCCAAGCCACTCCCTAAACAA 60
Query 201 TCCGACACTGAGCCGTCGACTCCCGCTCGTACACTAGAGCCCGAACTTCACCGCTCGCCG 260
||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| |||||
Sbjct 61 TCCGACATTGAGCCGTCGACTCCTGCTCGGACACTAGAGCCCGATGTTCACCGTTCGCC- 119
Query 261 GATGAGACCGCTCCTGAATTGGGTCTTGTTGATGAACCCACTCACACTACCCGGAGACGT 320
| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 ---G-GA-------TGAATTGGGTCTTGTTGATGAACCCACTCACACTACCCGGAGGCGT 168
Query 321 AGTCTTCGTCTTGCACACCAATTTGACGGCGATGATTGTGTCAC---------------T 365
|||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 169 AGTCTTCGTCTTGCACACCAATTTGACGGCGATGATAGTGTCACTGAAAAAGAGGTTAGT 228
Query 366 ---GAGA-AAGAG-GTT-AGTGTGGATGAAAAGTTTTTGAGTTTGCGTTCAGGGAAGAGA 419
|||| ||||| ||| | |||||||||||||||||||||||| | ||||||||||||
Sbjct 229 GGCGAGAGAAGAGAGTTGAATGTGGATGAAAAGTTTTTGAGTTTAAGGTCAGGGAAGAGA 288
Query 420 GTTGCTAAGAGAGGTGTCGATTATGGAATTGAAATTGAGTCTAGCAAGTTTGATTTCGAT 479
||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||
Sbjct 289 GTTGCTAAGAGAGGTGTTGATTATGGAATTGAAGTTGAGTCTAGGATGTTTGATTTCGAT 348
Query 480 -TTAAAGTTAGGAGAAAGT-GCGAGTAAAAC-AAAGAGGGTTTGTGTGGATTTGGTTGAA 536
|| ||||| | |||| | |||| |||| |||||||||||||||||||||||||||
Sbjct 349 AGCGAA-TTAGGCGGAAGTAG-GAGT-AAACGAAAGAGGGTTTGTGTGGATTTGGTTGAG 405
Query 537 GAAACTATTGTGAAGAATGAATCAGAGGATAGTGTG-GATTT-GG-AA-GATAAGAGTAG 592
|||| ||||| || | |||||| |||| |||||| | ||||| || || | | || | |
Sbjct 406 GAAAATATTGGGAGGGATGAATTAGAGAATAGTG-GAGATTTGGGAAAGGCTGTGA-TGG 463
Query 593 TAG-T-GGTGTGTTAGGT-GACTCGTTAGCGGAGAAGTGGTATGTAGTAGAAGTAGAGAA 649
|| | || ||| || || | | |||| || | | | | | ||||||||||||| ||
Sbjct 464 AAGATAGGAGTGGTA-GTGGTGT-GTTA--GGTG-ACTCG--T-TAGTAGAAGTAGAAAA 515
Query 650 TGAGAGCAATAACAAAGGAAAGGGGATAATGGAAGATTCCTATGGAGAAAGTGATGTGAT 709
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TGAGAGTAAGAACAAAGGAAAGGGGATAATGGAAGATTCCTATGGAGAAAGTGATGTGAT 575
Query 710 TTGTGGTCAGAGTTATGAGAA-GCAGAGTAGTTCTATGGGTAGAAGAAGATATACTAGGG 768
||||||| ||||||||||||| || |||||| |||||||||||||||| ||||||| |||
Sbjct 576 TTGTGGTGAGAGTTATGAGAAGGC-GAGTAGCTCTATGGGTAGAAGAAAATATACTCGGG 634
Query 769 AGGAGAAGGGAAAGGGTATTATGCAGGTGGAGGATGTTTCTTCTCCGGTAACGGTTGA-G 827
||||||||||||||||| |||| |||||||||||||| |||||||| || || | |
Sbjct 635 AGGAGAAGGGAAAGGGTGTTATTCAGGTGGAGGATGTCTCTTCTCC---AA---TT-ACG 687
Query 828 ATTGTCGAAGTTGATGAAGAAGAAATGGAAATCGAGAGCTTGGTTAACAGTGAGAAGCCC 887
| | | |||||||||||||||| ||||||||| |||| |||| |||||| |||| |||||
Sbjct 688 A-T-T-GAAGTTGATGAAGAAGCAATGGAAATTGAGAACTTGATTAACAATGAGGAGCCC 744
Query 888 CCGGATGTCTCTGTAACAGAATTGGCTGCGA-CGATGGCTAATGTTGAGCAAGCGCAGAA 946
|||| |||||||||| ||||||||||||| | || || |||||| || ||| |||||||
Sbjct 745 CCGGTTGTCTCTGTACCAGAATTGGCTGC-AGCGGGGGTTAATGTAGAACAAACGCAGAA 803
Query 947 TCGAGAAAATAGTAATGAGATTGGAAACGATTCAAGAACTCAGCACTTTCGTGACATTG- 1005
|| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 804 TC---ATAATAGTAATGAGATTGGAAACGGTTCAAGAACTCGGCACTTTCGTGACATTGC 860
Query 1006 CAGAGAGGATTGC-TCACAGATTTGCTCATTTTGATGCTCAAGTGGAGGAAGAAGAGGAT 1064
|| |||| | ||| || ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 861 CA-AGAGAAATGCTTC-CAGATTTGCTCGTTTTGATGCTCAAATGGAGGAAGAAGAGGAC 918
Query 1065 TTGTCAGATAAAGAGGGGGAGCAGCAGGTCGAAGATTGGCCGGGTCCTTTCTCTACTGCT 1124
|||||||||| |||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct 919 TTGTCAGATAGAGAGGGTGAACAACAGGTCGAAGATTGGCCTGGTCCTTTCTCTACTGCC 978
Query 1125 ATGAAAATAATTAAGGACCGAGAAGAGTACACGACTCCGCATGTTGGTATTGGCGTCTCC 1184
||||| |||||||||||| |||||||| |||||||||| |||||||| |||| ||||||
Sbjct 979 ATGAAGATAATTAAGGACAGAGAAGAGAACACGACTCCATATGTTGGTCTTGGTGTCTCC 1038
Query 1185 AACAAAGAAAGATCTTCACCAACTATTTGGGTTCCCAGAAGTAACTTTAGT-TTCCCCCC 1243
||||||||||||||||||||||||||||||||||||| ||| |||| |||| || ||||
Sbjct 1039 AACAAAGAAAGATCTTCACCAACTATTTGGGTTCCCAAAAGAAACTGTAGTCTT-GCCCC 1097
Query 1244 TCGGAAGGCTCCATCTCTGCAAGAATTATCCTTGCGAGTTCTTGTCAAGAATGCTGATGC 1303
||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1098 TCGGAAGGCTCCATCTCTGCAAGAACTATCTTTGCGAATTCTTGTCAAGAATGCTGATGC 1157
Query 1304 CATCACTTCTCTTGACTATGTTCCAGACACATTGAGGGTCAAACTTTGTCAATTGCTTTG 1363
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1158 CATCACTTCGCTTGACTATGTTCCAGACACACTGAGGGTCAAACTTTGTCAATTGCTTTG 1217
Query 1364 TGATTCTAGGAGAATGGACCTACACTTTCTTGATCTTCTTGTCCAGGGATCTCCAACAGA 1423
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1218 TGATTCTAGGAGAATGGACGTGCATTTTCTTGATCTTCTTGTCCAGGGATCTCCAACAGA 1277
Query 1424 AATTTGTGTTCCAGATTGCTCATGGCTGACCGAGGAAGAGTTCACTGAATGTTTTAAGAA 1483
||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||
Sbjct 1278 AATTTGTGTTCCAGATTGCTCATGGCTTACCGAGGAACAATTCACTGAGTGTTTTAAGAA 1337
Query 1484 CTGTGACACCAGCAACTTGATGGTTCTTCAACTTGACCAGTGTGGGCGGTGTATGCCAGA 1543
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1338 CTGTGACACCAGCAACTTGATGGTTCTTCAACTCGACCAGTGTGGTCGTTGTATGCCAGA 1397
Query 1544 TTATATATTACCCTT-CACTTTAGCAAGGTCACCAAAAGTGTTGCCGATGCTATCTACTT 1602
|||| ||||| | || ||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 1398 TTATGTATTA-CATTCCACCTTAGCAAGGTCACCAAAACAGTTGCCGATGCTATCTTCTT 1456
Query 1603 TATCTATAAGTGGTGCATGCCGGCTTTCCGATGTGGGGCTAC-GACAACTGGTTTCCTCT 1661
||||| |||||||||||||||||||||||||||||||||||| | | ||| |||||||||
Sbjct 1457 TATCTTTAAGTGGTGCATGCCGGCTTTCCGATGTGGGGCTACGGGC-ACTTGTTTCCTCT 1515
Query 1662 GCTCCTGCGATTACGTCTATTAATCTCAACCAATGCTCTCTTCTAACATCATCTAGCATT 1721
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1516 GCTCCTGCGATTACATCTATTAATCTCAGCCAATGCTCTCTTCTAACATCATCTAGCATT 1575
Query 1722 GATATGTTATCTGATTCATTGGGGTCAGTTTTAAGGGAACTGTATATCAACGAGTGCCAA 1781
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1576 GATATGTTATCTGATTCATTGGGGTCAGTTTTAAGGGAACTGTATATCAATGAGTGCCAA 1635
Query 1782 AACATTGATATGAAGCATATTCTCGCAGCATTGAAAAAGTTTGAGAAGTTGGAAGTATTG 1841
||||| |||||||| | |||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1636 AACATCGATATGAAACTTATTGTCTCAGCATTAAAAAAGTTTGAGAAGTTGGAAGTATTG 1695
Query 1842 TCCCTTGCGGATCTTCCTTCTGTCAAGGGTCGGTTCTTGAAGGAGTTTGTTACTGCTAGA 1901
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1696 TCCCTTGCGGATCTTCCTTCAGTCAAGGGTCAGTTCTTGAAGGAGTTTGTTACTGCTAGA 1755
Query 1902 GGTCAGACCCTGAAGCAGCTGATTTTGACCAACTCTCGGAAGTTATCTGATTCTTCTATT 1961
|| || |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||
Sbjct 1756 GGACAAACCCTGAAGCAGCTAATTTTGACCAACTCTGGGAAATTAACTGATTCTTCTATT 1815
Query 1962 AAAGTCATCTCTGAAAACTGTCCCAATTTAAGCGTCCTTGACCTGGCTAACGTATGCAAG 2021
|||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1816 AAAGCCATCTCTGAAAACTGTCCCAATTTAAGTGTGCTTGACCTGGCTAACGTATGCAAG 1875
Query 2022 CTGACAGATTCTTCTCTGGGTTACCTTGCAAATGGCTGTCAAGCGT-TGGAGAAATTGA- 2079
||||| |||||||| ||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1876 CTGACGGATTCTTCACTGGGTTACCTTGCAAATGGCTGTCAAGC-TCTAGAGAAATTGAT 1934
Query 2080 TTTTT-T-G--------TC--GC-AAC-C--C-----T-T-TC---AGTGATGAAGCTGT 2113
||||| | | || || ||| | | | | || ||||||||||||||
Sbjct 1935 TTTTTGTCGCAACTCTTTCAGGCAAACGCTTCATATGTCTCTCTATAGTGATGAAGCTGT 1994
Query 2114 AGCTGCATTTGTAGAAACCGCAGGTGGTTCTCTGAAGGAGCTATCACTAAACAATGTTAA 2173
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1995 AGCTGCATTTGTAGAAACCGCAGGCAGTTCTCTGAAGGAGCTATCACTAAACAATGTTAA 2054
Query 2174 GAAGGTTGGCCACAACACGGCCCTAGCACTTGCCAAACATTCAGATAAACTGCAGATTTT 2233
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2055 GAAGGTTGGCCACAACACGGCCCTAGCACTTGCCAAACATTCAGATAAGCTGCAGATTTT 2114
Query 2234 GGATATATCCTGGTGCCGAGAAATGTCCAACGATTTATTAGGCTACATTGTCGATAACAG 2293
|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 2115 GGATGTATCCTGGTGCCGAGAAATGTCGAACGATTTATTAGGCTACTTTGTCGATAACTG 2174
Query 2294 TTCATCTCTGAAAGTGTTGAAGGTCTTTGGATGCAGTCAGGTGACGGATGTATTTGTTAA 2353
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 2175 TTCATCTTTGAAAGTGTTGAAGGTCTTTGGATGCACTCAGGTGACCGATGTATTCGTTAA 2234
Query 2354 AGGTCACTCAAATCCTAATGTCAAGATCTTAGGTGTGAAGATGGATCCTTTCTTAGGCCA 2413
|||||||||||| ||||||||||||||||||||| |||||||| |||| ||||| |||||
Sbjct 2235 AGGTCACTCAAACCCTAATGTCAAGATCTTAGGTTTGAAGATGAATCCCTTCTTGGGCCA 2294
Query 2414 CCTT 2417
||||
Sbjct 2295 CCTT 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5