BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06050.2
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480216 jgi|Araly1|480216|fgenesh2_kg.3__2917__AT2G06050.1 1980 0.0
> Ahg480216 jgi|Araly1|480216|fgenesh2_kg.3__2917__AT2G06050.1
Length=1466
Score = 1980 bits (1072), Expect = 0.0
Identities = 1242/1327 (94%), Gaps = 0/1327 (0%)
Strand=Plus/Plus
Query 184 TCTCCTTCTTCCAGATCGGCGGAGACATGACGGCGGCACAAGGGAACTCTAACGAGACTC 243
||| ||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 140 TCTTCTTCTCCCAGATCGGTGGAGACATGACGGCGGGACAAAAGAACTCTAACGAGACTC 199
Query 244 TGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGA 259
Query 304 TGACGCGGTGCAGGGCGTTGAACGGAGTACCAAACGCGGCGTTGGCAGAGTATTATGCTC 363
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 260 TGACGCGGTGCAGGGCGTTGAACGGAGTTCCAAACGCGGCGTTGGCGGAGTATTACGCTC 319
Query 364 AACGGACCACTCCCGGCGGTTTTCTCATCTCCGAAGGCACCATGGTCTCTCCCGGATCCG 423
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 320 AACGCACCACTCCCGGCGGCTTTCTCATCTCCGAAGGCACCATGGTCTCTCCAGGATCCG 379
Query 424 CAGGGTTCCCACATGTGCCTGGAATCTATTCAGATGAACAAGTAGAAGCATGGAAGCAAG 483
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 380 CAGGGTTCCCACATGTGCCTGGAATCTATTCGGATGAACAAGTAGAGGCATGGAAGCAAG 439
Query 484 TTGTGGAAGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAATTATGGCATGTTGGAC 543
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 440 TTGTGGATGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAGTTATGGCATGTTGGAC 499
Query 544 GTGCTTCTCATGCAGTGTATCAACCTAATGGAGGATCACCAATATCGTCAACGAACAAAC 603
||||||||||| |||||||||||||||||||||| || || ||||| |||||||||| ||
Sbjct 500 GTGCTTCTCATCCAGTGTATCAACCTAATGGAGGGTCGCCGATATCTTCAACGAACATAC 559
Query 604 CAATCTCGGAAAACAGGTGGCGAGTTTTGTTGCCCGATGGTTCCCACGTGAAGTACCCGA 663
| ||||| ||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||
Sbjct 560 CCATCTCAGAAAAAAGGTGGCGAGTTTTGTTGCCTGATGGATCCTACGCGAAGTACCCGA 619
Query 664 AACCTCGGGCTTTAGAAGCTTCCGAGATACCTCGGGTGGTGGAGGATTATTGCCTTTCTG 723
|||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 620 AACCCCGGGCTTTAGAAGCTTCCGAGATACCTCGAGTGGTGGAAGATTATTGCCGCTCTG 679
Query 724 CTTTGAATGCGATTCGAGCTGGTTTCGATGGGATTGAGATCCACGGGGCGCATGGTTACC 783
|||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 680 CTTTGAATGCTATCCGAGCTGGTTTCGATGGGATTGAGATCCATGGGGCGCACGGTTACC 739
Query 784 TTATTGATCAGTTTTTGAAAGATGGGATCAATGACCGTACTGACCAATACGGAGGATCCA 843
| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct 740 TCATTGATCAGTTTTTGAAAGACGGGATCAATGACCGCACTGACCAATATGGAGGCTCCT 799
Query 844 TTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCCATAGGAG 903
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 800 TTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCGATAGGAG 859
Query 904 CTAGTAAAGTTGGTGTGAGGGTATCTCCGGCTATAGATCACTTGGACGCAACTGATTCTG 963
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 860 CTAGTAAAGTTGGTGTGAGGGTATCTCCAGCGATAGACCACTTGGACGCAACTGATTCTG 919
Query 964 ACCCACTATCACTCGGGCTAGCCGTGGTTGGCATGCTCAATAAGTTACAAGGTGTTAATG 1023
||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 920 ACCCATTATCCCTCGGGCTAGCCGTGGTTGATTTGCTCAATAAGTTACAAGATGTTAATG 979
Query 1024 GCTCAAAGCTCGCTTACCTTCACGTTACACAACCTCGCTACCACGCCTACGGGCAAACAG 1083
|||||||||||||||||||||| || || || ||||| ||||||||||||||||||||||
Sbjct 980 GCTCAAAGCTCGCTTACCTTCATGTAACGCAGCCTCGTTACCACGCCTACGGGCAAACAG 1039
Query 1084 AGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAAGAGCTTGAGGATGG 1143
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1040 AGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAGGAGCTTGAGAATGG 1099
Query 1144 CTTATAATGGAACCTTTATGTCTAGTGGAGGATTCAATAAGGAACTAGGTATGCAAGCTG 1203
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 1100 CTTACAATGGAACCTTTATGTCCAGTGGAGGATTCAATAAGGAACTAGGCATGAAAGCTA 1159
Query 1204 TTCAACAAGGTGATGCTGATTTGGTTTCATATGGCAGACTGTTTATCGCAAACCCGGATT 1263
||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 1160 TTCAACAAGGTGATGCTGATTTGGTTTCATACGGCAGGCTTTTTATTGCAAACCCGGATT 1219
Query 1264 TGGTTTCGCGGTTCAAGATTGATGGAGAGTTGAATAAATATAATCGGAAGACGTTTTACA 1323
|||||| ||| ||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1220 TGGTTTTGCGATTCAAGATTGATGCAAAGTTGAATAAATATAATAGGAAGACGTTTTACA 1279
Query 1324 CTCAAGATCCAGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCT 1383
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CTCAAGATCCTGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCT 1339
Query 1384 GAGTTTGATAATCGAGGAGAAAATGTATTGACAATACATTGATATGTAAAATGACAATGT 1443
||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1340 GAGTTTGATAATCGAGGAGAAGATATATTGACAATATATTGATATGTAAAATGACAATGG 1399
Query 1444 TATTGTTATCCACTTAATATTTAGTCATGTATCTTGTTGTTTATCTAGTTAAAATCTTCA 1503
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1400 TATTGTTATCCACTTAATAAATAGTCGTGTATCTTATTGTTTATCTACTTAAAATCTTCA 1459
Query 1504 TGGCATT 1510
|||||||
Sbjct 1460 TGGCATT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5