BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06200.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480218 jgi|Araly1|480218|fgenesh2_kg.3__2919__AT2G06200.1 1253 0.0
> Ahg480218 jgi|Araly1|480218|fgenesh2_kg.3__2919__AT2G06200.1
Length=847
Score = 1253 bits (678), Expect = 0.0
Identities = 802/857 (94%), Gaps = 27/857 (3%)
Strand=Plus/Plus
Query 15 AATCCCAAtctttaatc--t-ctctttcttcttcatctctctttctctttctctcttcAT 71
||||||||||||||||| | |||||||||||| ||||||| |||||| ||||||||||
Sbjct 1 AATCCCAATCTTTAATCTTTAATCTTTCTTCTTCTTCTCTCTCTCTCTTCCTCTCTTCAT 60
Query 72 GGCTACAAGGATTCCATTCACAGAATCACAATGGGAAGAACTTGAAAACCAAGCTCTTGT 131
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GGCTACTAGGATTCCATTCACAGAATCACAATGGGAAGAGCTTGAAAACCAAGCTCTTGT 120
Query 132 GTTCAAGTACTTAG-CTGCAAATATGCCTGTTCCACCTCAtcttctcttcctcatcaaaa 190
|||||||||||||| || ||||| | || |||||||||||||||||||||||||||||||
Sbjct 121 GTTCAAGTACTTAGCCT-CAAATGTTCCAGTTCCACCTCATCTTCTCTTCCTCATCAAAA 179
Query 191 gaccctttctcttctcttcttcttcttcttcatcttcttcttcaagcttcttctctccca 250
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 180 GACCCTTTCTCTTCTCTTCTTCTTCTTC--C-TCTTCCTCTTCAAGCTTCTTCTCTCCCA 236
Query 251 ctctttctcCACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCTTTCTCCACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATG 296
Query 311 CAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCTAAAGAAGCTT 370
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 297 CAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCCAAAGAAGCTT 356
Query 371 ACCCTGACTCTAAGTACTGTGAGAGACATATGCATAGAGGCAAGAACCGTTCTTCCTCAA 430
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 ATCCTGACTCTAAGTACTGTGAGAGGCATATGCATAGAGGCAAGAACCGTTCTTCCTCAA 416
Query 431 GAAAGCCTCCTCCTACTCAATTCACTCCAAATCTCTTTCTCGACTCTTCT-TC-CA-GAA 487
||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||
Sbjct 417 GAAAGCCTCCTCCTACTCAATTCACACCAAATCTCTTTCTCGACTCTTCTCTATCAAGAA 476
Query 488 GAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAA 536
Query 548 GCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGAGGCATCAACAA-- 605
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 GCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGGGGCATCAACAAAT 596
Query 606 ---C----GAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGTACTGACTTGAGGA 658
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 597 TTTCTAACGAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGAACTGACTTGGGGA 656
Query 659 CACGTGAGAGGCCATTGATG-TTAGAGGAGAAGCTGAAACAAAGAGATCATGATAATGAA 717
| ||||||||||||||||| || |||||||||||||||||||||||| ||||| |||
Sbjct 657 CTTGTGAGAGGCCATTGATGCTT-GAGGAGAAGCTGAAACAAAGAGATGATGAT---GAA 712
Query 718 GAAGAGCAAGGAAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAATCT 777
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 713 CAAGAGCAAGGTAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAGTCT 772
Query 778 TCTGTTTCTACTTCACTCTTCATTTGATCATCTTTTGTTCTTATAACCTTGTATTTCTTG 837
|||||||||||||||||||| |||||||||||||||||||||| | |||| | |||||||
Sbjct 773 TCTGTTTCTACTTCACTCTTTATTTGATCATCTTTTGTTCTTA-A-CCTTCTGTTTCTTG 830
Query 838 TTAAGATGGTAATGCAA 854
||||| |||||||||||
Sbjct 831 TTAAGTTGGTAATGCAA 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5