BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G06200.1 Length=872 Score E Sequences producing significant alignments: (Bits) Value Ahg480218 jgi|Araly1|480218|fgenesh2_kg.3__2919__AT2G06200.1 1253 0.0 > Ahg480218 jgi|Araly1|480218|fgenesh2_kg.3__2919__AT2G06200.1 Length=847 Score = 1253 bits (678), Expect = 0.0 Identities = 802/857 (94%), Gaps = 27/857 (3%) Strand=Plus/Plus Query 15 AATCCCAAtctttaatc--t-ctctttcttcttcatctctctttctctttctctcttcAT 71 ||||||||||||||||| | |||||||||||| ||||||| |||||| |||||||||| Sbjct 1 AATCCCAATCTTTAATCTTTAATCTTTCTTCTTCTTCTCTCTCTCTCTTCCTCTCTTCAT 60 Query 72 GGCTACAAGGATTCCATTCACAGAATCACAATGGGAAGAACTTGAAAACCAAGCTCTTGT 131 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 GGCTACTAGGATTCCATTCACAGAATCACAATGGGAAGAGCTTGAAAACCAAGCTCTTGT 120 Query 132 GTTCAAGTACTTAG-CTGCAAATATGCCTGTTCCACCTCAtcttctcttcctcatcaaaa 190 |||||||||||||| || ||||| | || ||||||||||||||||||||||||||||||| Sbjct 121 GTTCAAGTACTTAGCCT-CAAATGTTCCAGTTCCACCTCATCTTCTCTTCCTCATCAAAA 179 Query 191 gaccctttctcttctcttcttcttcttcttcatcttcttcttcaagcttcttctctccca 250 |||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct 180 GACCCTTTCTCTTCTCTTCTTCTTCTTC--C-TCTTCCTCTTCAAGCTTCTTCTCTCCCA 236 Query 251 ctctttctcCACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATG 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CTCTTTCTCCACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATG 296 Query 311 CAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCTAAAGAAGCTT 370 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 297 CAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCCAAAGAAGCTT 356 Query 371 ACCCTGACTCTAAGTACTGTGAGAGACATATGCATAGAGGCAAGAACCGTTCTTCCTCAA 430 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 357 ATCCTGACTCTAAGTACTGTGAGAGGCATATGCATAGAGGCAAGAACCGTTCTTCCTCAA 416 Query 431 GAAAGCCTCCTCCTACTCAATTCACTCCAAATCTCTTTCTCGACTCTTCT-TC-CA-GAA 487 ||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||| Sbjct 417 GAAAGCCTCCTCCTACTCAATTCACACCAAATCTCTTTCTCGACTCTTCTCTATCAAGAA 476 Query 488 GAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAA 536 Query 548 GCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGAGGCATCAACAA-- 605 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 537 GCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGGGGCATCAACAAAT 596 Query 606 ---C----GAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGTACTGACTTGAGGA 658 | |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 597 TTTCTAACGAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGAACTGACTTGGGGA 656 Query 659 CACGTGAGAGGCCATTGATG-TTAGAGGAGAAGCTGAAACAAAGAGATCATGATAATGAA 717 | ||||||||||||||||| || |||||||||||||||||||||||| ||||| ||| Sbjct 657 CTTGTGAGAGGCCATTGATGCTT-GAGGAGAAGCTGAAACAAAGAGATGATGAT---GAA 712 Query 718 GAAGAGCAAGGAAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAATCT 777 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 713 CAAGAGCAAGGTAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAGTCT 772 Query 778 TCTGTTTCTACTTCACTCTTCATTTGATCATCTTTTGTTCTTATAACCTTGTATTTCTTG 837 |||||||||||||||||||| |||||||||||||||||||||| | |||| | ||||||| Sbjct 773 TCTGTTTCTACTTCACTCTTTATTTGATCATCTTTTGTTCTTA-A-CCTTCTGTTTCTTG 830 Query 838 TTAAGATGGTAATGCAA 854 ||||| ||||||||||| Sbjct 831 TTAAGTTGGTAATGCAA 847 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32290110699 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5