BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G06255.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930933 jgi|Araly1|930933|scaffold_303390.1                        538    2e-152


> Ahg930933 jgi|Araly1|930933|scaffold_303390.1
Length=373

 Score =  538 bits (291),  Expect = 2e-152
 Identities = 324/340 (95%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  219  CAGATAATAATGGAGGGAGACACAATATCTAGGATGATGGGAAGTGGAGTTCAAATGGAT  278
            |||| |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  14   CAGAGAATAATGGAGAGAGACACAATTTCTAGGATGATGGGAAATGGAGTTCAAATGGAT  73

Query  279  GGGAAGATTCTTCAAACGTTTGAGAAAAGTTTTGTTCAAGTGCAAAACATATTGGACCAC  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  74   GGGAAGATTCTTCAAACGTTTGAGAAAAGTTTTGTTCAAGTGCAAAACATATTGGACCAC  133

Query  339  AACAGATTGCTTATAAACGAGATAAACCAAAACCATGAGTCCAAAATCCCGGACAACCTC  398
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  134  AACAGATTGCTTATAAACGAGATAAACCAGAACCATGAGTCCAAAATCCCGGACAACCTC  193

Query  399  GGACGAAACGTCGGTTTGATCCGAGAATTGAACAATAACGTGAGAAGGGTTGCTCATCTT  458
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  194  GGACGAAACGTCAGTTTGATCCGAGAATTGAACAATAATGTGAGAAGGGTTGCTCATCTT  253

Query  459  TATGTCGATCTTTCCAACAACTTCTCCAAATCCATGGAAGCTTCTTCTGAAGGAGACTCA  518
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  254  TATGTCGATCTTTCCAACAACTTTTCAAAATCCATGGAAGCTTCTTCTGAAGGAGACTCA  313

Query  519  TCAGAAGGACGAGGTAACA-GAAGAATCAGGCCTGCTTAA  557
             ||| |||| ||| | ||| || |||||||||||||||||
Sbjct  314  GCAGGAGGAGGAGATCACATGA-GAATCAGGCCTGCTTAA  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5