BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06510.1
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930934 jgi|Araly1|930934|scaffold_303391.1 3109 0.0
> Ahg930934 jgi|Araly1|930934|scaffold_303391.1
Length=1964
Score = 3109 bits (1683), Expect = 0.0
Identities = 1846/1927 (96%), Gaps = 2/1927 (0%)
Strand=Plus/Plus
Query 107 ATCATGCCGGTGAGTTTGACTCCGAACGCAATCACGGCGATACATGACGGCGACGTGAAT 166
||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 18 ATCATGCCGGTGAGTTTGACTCCGAACGCCATCACGGCGATAAACGACGGCGACGTGAAT 77
Query 167 TTGAAGCCGTTGTTACAGGTTTTAGAAATCAAAATGATAGGAAGAAGTCAAGAGAGAAGC 226
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 78 TTGAAGCCGTTGTTACAGGTTTTAGAAATCAAAATAATAGGAAGAAGTCAAGAGAGAAGC 137
Query 227 CAGGAGAGGTATCGTTTCCTCATTTCAGATGGTGTTTCTGCTCAACATGCTATGGTCGCG 286
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 138 CAAGAGAGGTATCGTTTCCTCATTTCCGATGGTGTTTCAGCTCAACATGCTATGGTTGCG 197
Query 287 GTTCAGCTTAATGATCGAGTCAAGTCAGGACAATTTGAGAAAGGATCTATCGTTCAGCTG 346
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 198 GTTCAGCTTAATGATCGAGTCAAATCAGGACAAGTTGAGAAAGGATCCATCGTTCAGCTG 257
Query 347 ATTGATTACATTTGTAGCGACGTTAAAGGCCGCAAGCTTATTGTGGTGCTGAACATGGAG 406
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 258 ATTGATTACATTTGCAGCGACGTTAAAGGCCGCAAGCTTATTTTGGTGCTGAATATGGAG 317
Query 407 ACGATAGTACAACAGTCTGAAACCATTGGGAACCCTACAATATTTGGAGAAACAGATACA 466
|||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 318 ACGATAGTACCACATTCTGAAACCATCGGGAACCCCACAATATTTGGAGAAACAGATACA 377
Query 467 GAAGCCCAGAAGACATTTTCAGGTACGGGCAATATACCGCCTCCGAACAGGGTTGTTTTT 526
|||||||||||| | |||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 378 GAAGCCCAGAAGCCGCTTTCAGCTATGGGTAATATACCGCCTCCGAACAGGGTTGTTTTT 437
Query 527 AATGAACCAATGGTTCAGCATTCTGTTAATAGAGCACCTCCCAGGGGTGTAAACATTCAA 586
|||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 438 AATGAACCAACGGCTCAGCATTCTGTTAATAGAGCACCTCCCAGGGGCGTAAACATTCAA 497
Query 587 AATCAAGCCAACAATACTCCAAGCTTCAGGCCATCTGTTCAACCTTCATATCAACCGCCT 646
|||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 498 AATCCAGCCAACAGTACTCCAAGTTTCAGGCCTTCTGTTCAACCTTCATATCAACCGCCT 557
Query 647 GCAAGTTACAGAAATCATGGACCCATCATGAAGAACGAGGCTCCAGCTCGAGTCATCCCT 706
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 GCAAGCTACAGAAATCATGGACCCATAATGAAGAACGAGGCTCCAGCTCGAGTCATCCCT 617
Query 707 ATTGCTGCTCTCAATCCATACCAAGGTCGATGGGCTATTAAGGCTAGAGTAACTGCGAAA 766
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 618 ATTGCTGCTCTCAATCCATACCAAGGTCGGTGGGCTATTAAGGCTAGAGTAACTGCGAAA 677
Query 767 GGAGATATCAGACGATATAACAATGCAAAAGGAGATGGAAAGGTTTTCTCGTTTGATCTG 826
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 678 GGAGATATCAGACGATACAACAATGCAAAAGGAGATGGAAAGGTTTACTCCTTTGATCTG 737
Query 827 CTTGACTATGATGGAGGGGAGATTCGGGTTACGTGCTTTAATGCTCTTGTTGACCGTTTC 886
||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||| |||
Sbjct 738 CTTGACTCTGATGGAGGGGAGATTCGGGTTACCTGCTTTAATGCTGTTGCTGACCGATTC 797
Query 887 TATGATGTTACTGAGGTTGGTAAGGTATATTTGATTTCAAAGGGAAGTTTGAAGCCTGCA 946
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 798 TATGACGTTACTGAGGTTGGTAAGGTATATTTGATTTCAAAGGGAAGCTTGAAGCCTGCA 857
Query 947 CAGAAAAATTTCAACCACTTAAAGAATGAATGGGAAATTTTCTTGGAGTCAACATCGACT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 CAGAAAAATTTCAACCACTTAAAGAATGAATGGGAAATTTTCTTGGAGTCAACATCGACT 917
Query 1007 GTGGAGCTTTGCCCTGATGAAGATGGCTCCATACCAAAGCAGCAATTCTCCTTCCGCCCA 1066
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||
Sbjct 918 GTGGAGCTTTGCCCTGATGAAGATGGCTCCATACCAAGGCAGCAGTTCTCTTTCCGTCCT 977
Query 1067 ATAAGTGACATTGAGAACGCTGAGAACAATACCATACTCGATGTCATTGGTGTGGTGACT 1126
||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 978 ATAGGTGACATTGAGAACGCCGAGAACAATACCATACTCGATGTCATTGGGGTTGTGACT 1037
Query 1127 TCTGTGAACCCCTCGGTGCCAATCTTGAGAAAGAACGGGATGGAAACCCATAGGAGGATC 1186
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1038 TCTGTGAACCCCTCGGTGCCAATCTTGAGAAAGAACGGGATGGAAACCCATAGGCGAATC 1097
Query 1187 CTGAATCTAAAGGATGAATCAGGAAAGGCTGTAGAGGTAACACTTTGGGGAGAATTCTGT 1246
|||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 1098 CTGAATCTGAAGGATGAATCGGGAAAAGCTGTAGAGGTAACGCTATGGGGAGAATTCTGT 1157
Query 1247 AACCGAGATGGTCGGCAACTGGAAGAGATGGTTGATTCAGCTTTTCACCCGGTTTTAGCA 1306
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1158 AATCGAGATGGTCGGCAACTGGAAGAGATGGTTGATTCAGCTTTTCATCCGGTTTTAGCA 1217
Query 1307 ATAAAAGCTGGAAAAGTAAGCGACTTCAGTGGGAAATCAGTAGGGACAATATCTTCAACA 1366
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1218 ATAAAAGCTGGAAAAGTAAGCGACTTCAGCGGGAAATCAGTGGGGACAATATCTTCAACA 1277
Query 1367 CAGCTCTTCATAAATCCAGATTTCCCTGAAGCTCATAAACTACGGACCTGGTTCGATTAC 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1278 CAGCTCTTCATAAATCCAGATTTCCCTGAAGCTCATAAACTACGGACCTGGTTCGATCAC 1337
Query 1427 GGGGGAAAAGACACTGCTTCCTTCTCCATCTCCAGGGACACTATGCCTGGAGGAGTTTCC 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGGGGAAAAGACACTGCTTCCTTCTCCATCTCCAGGGACACTATGCCTGGAGGAGTTTCC 1397
Query 1487 AGGAACGAGATAAGGAAAAA-TGTTTCTCAGATCAAAGAGGAAGGTCTTGGAAGATCAGA 1545
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1398 AGGAACGAGATAA-GAAAAAGTGTTTCTCAGATCAAAGAGGAAGGTCTTGGAAGATCAGA 1456
Query 1546 TAAGCCTGACTGGATCACTGTGAAAGCAACCATATCATTCATCAAAACAGATAGCTTCTG 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 TAAGCCTGACTGGATCACTGTGAAAGCAACCATATCATTCATCAAAACAGATAGCTTCTG 1516
Query 1606 TTATACAGCTTGTCCTTTGATGATCGGGGATAAACAATGCAACAAGAAGGTTACACGGTC 1665
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1517 TTATACAGCTTGTCCTTTGATGATCGGAGATAAACAATGCAACAAGAAGGTGACACGGTC 1576
Query 1666 TGGAACAAACAGGTGGCTCTGTGACCGGTGCAACCAAGAGTCTGATGAATGCGACTATAG 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1577 TGGAACAAACAGGTGGCTCTGTGACCGGTGCAACCAAGAGTCTGATGAATGCGACTACAG 1636
Query 1726 ATACCTTCTTCAGGTACAGATTCAAGACCACACTGGGTTGACTTGGATAACCGCGTTTCA 1785
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1637 ATACCTTCTTCAGGTGCAGATTCAAGACCACACTGGGTTGACTTGGATAACCGCATTCCA 1696
Query 1786 AGAAACAGGAGAAGAAATAATGGGATGTCCGGCTAAGAAGCTTTACGCAATGAAATACGA 1845
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1697 AGAAACGGGAGAAGAAATCATGGGATGTCCGGCTAAGAAGCTTTACGCATTGAAATACGA 1756
Query 1846 ATTGGAGAAGGAGGAAGAGTTCGCAGAGATTGTTAGAGACAGACTGTTTCATCAGTACAT 1905
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1757 ATTGGAGAAGGAGGAAAAGTTCGCAGAGATTGTTAGAGACAGACTGTTTCATCAATACAT 1816
Query 1906 GTTGAAGCTGAAGATCAAAGAGGAATCGTATGGGGATGAACAAAGAGTGAAGATGACTGT 1965
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GTTGAAGCTAAAGATCAAAGAGGAATCGTATGGGGATGAACAAAGAGTGAAGATGACTGT 1876
Query 1966 TGTGAAGGTTGATAAGGTGAATTATACATCCGAGAGTAAATACATGCTTGATTTGCTCGT 2025
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1877 TGTGAAGGTGGATAAGGTGAATTATACATCAGAGAGTAAATACATGCTTGATTTGCTCGT 1936
Query 2026 AAGGTAA 2032
|||||||
Sbjct 1937 AAGGTAA 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79646702295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5